Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0013433

Physical Location & Seq

Genomic Coordinates Forward (+)

16225878 .. 16228233

Gene Structure 2356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g16710.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGAGGGAGCGTGTGGAACCGTCGGACGGTACAGAGGCTGCGGCAGTTGCTGATCTCGACCGTTGGATCGATGAAGGTGAAGCTTCTGCTGTGCTGTTGCATCGGATTCACGCTCATCGTGCTCGCCAGTCGAGCTTCGGATTTCATGGGATGGACGAGTCACACTACGGCTCTGGAACGGTTCTCGGATTCCCGGAAAGGATACTCTATTGTAATGAACACATGGAAAAGATATGATCTTCTGAAGCAGTCTATTTCTCACTATTCTAGATGTCCTCGGCTTGATTCAATACATATTGTGTGGAGTGAGCCAAGTCCTCCGTCAGATTCTCTCAGAAAATTTCTGGACCACATTGTACATCTGAACACTAGAGATGGGCGACAAGTTGAATTGAAATACGATATCAATAAGGAAGACAGTTTGAACAACAGATTTAAAGAAATTAAGGATTTGAGAACAGATGCCGTTTTTTCAATCGATGATGATGTTATATTCCCTTGTTCTTCAGTGGAATTTGCTTTCGATGTTTGGCAAAGTGCATCGGATACAATGGTTGGCTTTGTGCCTCGTATGCACCGGATTGATCCGAAAGGTGATAAGAATCACTACATATACGGTGGATGGTGGTCGGTTTGGTGGACAGGTACATACAGTATGGTACTGTCTAAGGCAGCCTTCTTCCACAAAAAGTACCTAAGTTTGTACACAAATGAAATGCCAGCATCAATCAAAGAGTTTATAACCAAGAACAGGAACTGTGAAGACATTGCAATGTCCTTTCTTGTAGCAAATGCAACTGGTGCTCCCCCTATATGGGTGGAAGGTAAAATATTCGAGATTGGTTCAACTGGCATCAGTACCTTAGGAGGACATACTGAAAAGAGAACCAGCTGCGTCGATAGGTTTGTTGCCGGGTTTGGACGGATGCCATTGGTACCCACTTCCGTGAAGGCCGTTGACAGTCGCAACATCTGGTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008219 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010383 GO:0010393 GO:0010395 GO:0010400 GO:0010401 GO:0012505 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0030243 GO:0031410 GO:0031982 GO:0031984 GO:0032502 GO:0033993 GO:0035251 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0046527 GO:0048856 GO:0050896 GO:0051273 GO:0052541 GO:0052546 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:0097708 GO:0098791 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

329

Amino Acids

37.65

Weight (kDa)

9.26

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55830
fragaria_vesca	FvH4_7g24130
malus_domestica	MD01G1148500.v1.1 MD07G1215500.v1.1
prunus_persica	Prupe.2G247400_v2.0.a1 Prupe.2G247400_v2.0.a1
pyrus_communis	pycom01g16710 pycom07g19780
rosa_chinensis	RchiOBHm_Chr1g0369551
rosa_laevigata	RLG00000027119
rosa_multiflora	Rmu_sc0001154.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287530
rosa_rugosa	Rorug01G0351100
rosa_samantha	Rh1AG359400 Rh1BG323100 Rh1CG336400 Rh1DG353900
rosa_wichuraiana	Rw1G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	743
Acc65I	GGTACC	1 cut(s)	937
AccB1I	GGYRCC	1 cut(s)	937
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	2 cut(s)	76, 581
AcsI	RAATTY	2 cut(s)	341, 515
AcuI	CTGAAG	2 cut(s)	266, 492
AfaI	GTAC	8 cut(s)	33, 360, 649, 663, 695, 707, 862, 939
AfiI	CCNNNNNNNGG	4 cut(s)	28, 753, 816, 817
AgsI	TTSAA	6 cut(s)	291, 392, 397, 427, 477, 849
AleI	CACNNNNGTG	1 cut(s)	947
AluBI	AGCT	3 cut(s)	85, 137, 894
AluI	AGCT	3 cut(s)	85, 137, 894
Alw21I	GWGCWC	2 cut(s)	126, 808
AlwI	GGATC	2 cut(s)	76, 581
AlwNI	CAGNNNCTG	3 cut(s)	40, 52, 759
AoxI	GGCC	1 cut(s)	954
ApeKI	GCWGC	3 cut(s)	40, 674, 894
ApoI	RAATTY	2 cut(s)	341, 515
Asp718I	GGTACC	1 cut(s)	937
AspS9I	GGNCC	1 cut(s)	349
AsuC2I	CCSGG	2 cut(s)	196, 916
AsuHPI	GGTGA	2 cut(s)	91, 608
AvaII	GGWCC	1 cut(s)	349
AxyI	CCTNAGG	1 cut(s)	865
BaeI	ACNNNNGTAYC	2 cut(s)	540, 573
BanI	GGYRCC	1 cut(s)	937
BbsI	GAAGAC	2 cut(s)	423, 771
Bbv12I	GWGCWC	2 cut(s)	126, 808
BbvI	GCAGC	3 cut(s)	27, 686, 881
BccI	CCATC	3 cut(s)	147, 371, 618
BceAI	ACGGC	3 cut(s)	186, 452, 941
BciVI	GTATCC	2 cut(s)	197, 541
BcnI	CCSGG	2 cut(s)	196, 916
BfaI	CTAG	2 cut(s)	270, 372
BfuI	GTATCC	2 cut(s)	197, 541
BisI	GCNGC	4 cut(s)	41, 44, 675, 895
BlsI	GCNGC	4 cut(s)	42, 45, 676, 896
Bme1390I	CCNGG	2 cut(s)	196, 916
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	2 cut(s)	20, 939
BmrFI	CCNGG	2 cut(s)	196, 916
BmsI	GCATC	6 cut(s)	111, 454, 551, 734, 864, 918
BpiI	GAAGAC	2 cut(s)	423, 771
BpuMI	CCSGG	2 cut(s)	196, 916
Bsa29I	ATCGAT	2 cut(s)	71, 480
BsaBI	GATNNNNATC	1 cut(s)	603
BsaJI	CCNNGG	1 cut(s)	278
BsaWI	WCCGGW	1 cut(s)	579
BsaXI	ACNNNNNCTCC	2 cut(s)	790, 820
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 753, 816, 817
Bse1I	ACTGG	3 cut(s)	129, 805, 856
Bse21I	CCTNAGG	1 cut(s)	865
Bse3DI	GCAATG	2 cut(s)	768, 780
Bse8I	GATNNNNATC	1 cut(s)	603
BseCI	ATCGAT	2 cut(s)	71, 480
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	3 cut(s)	158, 629, 933
BseJI	GATNNNNATC	1 cut(s)	603
BseLI	CCNNNNNNNGG	4 cut(s)	28, 753, 816, 817
BseMI	GCAATG	2 cut(s)	768, 780
BseMII	CTCAG	1 cut(s)	349
BseNI	ACTGG	3 cut(s)	129, 805, 856
BseXI	GCAGC	3 cut(s)	27, 686, 881
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	1 cut(s)	956
BshNI	GGYRCC	1 cut(s)	937
BshVI	ATCGAT	2 cut(s)	71, 480
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	2 cut(s)	126, 808
BsiSI	CCGG	3 cut(s)	196, 580, 915
BslI	CCNNNNNNNGG	4 cut(s)	28, 753, 816, 817
BsnI	GGCC	1 cut(s)	956
Bsp1286I	GDGCHC	2 cut(s)	126, 808
Bsp1407I	TGTACA	2 cut(s)	358, 705
Bsp143I	GATC	4 cut(s)	54, 68, 238, 586
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	1 cut(s)	956
BspCNI	CTCAG	1 cut(s)	348
BspDI	ATCGAT	2 cut(s)	71, 480
BspLI	GGNNCC	2 cut(s)	20, 939
BspPI	GGATC	2 cut(s)	76, 581
BspT107I	GGYRCC	1 cut(s)	937
BsrDI	GCAATG	2 cut(s)	768, 780
BsrGI	TGTACA	2 cut(s)	358, 705
BsrI	ACTGG	3 cut(s)	129, 805, 856
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	4 cut(s)	54, 68, 238, 586
BstAPI	GCANNNNNTGC	1 cut(s)	803
BstAUI	TGTACA	2 cut(s)	358, 705
BstC8I	GCNNGC	2 cut(s)	126, 723
BstDEI	CTNAG	4 cut(s)	335, 669, 698, 865
BstF5I	GGATG	3 cut(s)	158, 629, 933
BstKTI	GATC	4 cut(s)	57, 71, 241, 589
BstMBI	GATC	4 cut(s)	54, 68, 238, 586
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	5 cut(s)	49, 121, 134, 574, 803
BstSCI	CCNGG	2 cut(s)	194, 914
BstV1I	GCAGC	3 cut(s)	27, 686, 881
BstV2I	GAAGAC	2 cut(s)	423, 771
Bsu15I	ATCGAT	2 cut(s)	71, 480
Bsu36I	CCTNAGG	1 cut(s)	865
BsuI	GTATCC	2 cut(s)	197, 541
BsuRI	GGCC	1 cut(s)	956
BsuTUI	ATCGAT	2 cut(s)	71, 480
BtsCI	GGATG	3 cut(s)	158, 629, 933
BtsIMutI	CAGTG	1 cut(s)	516
Cac8I	GCNNGC	2 cut(s)	126, 723
CaiI	CAGNNNCTG	3 cut(s)	40, 52, 759
Cfr13I	GGNCC	1 cut(s)	349
ClaI	ATCGAT	2 cut(s)	71, 480
CseI	GACGC	1 cut(s)	886
Csp6I	GTAC	8 cut(s)	32, 359, 648, 662, 694, 706, 861, 938
CviAII	CATG	2 cut(s)	148, 225
CviQI	GTAC	8 cut(s)	32, 359, 648, 662, 694, 706, 861, 938
DdeI	CTNAG	4 cut(s)	335, 669, 698, 865
DpnI	GATC	4 cut(s)	56, 70, 240, 588
DpnII	GATC	4 cut(s)	54, 68, 238, 586
DraI	TTTAAA	1 cut(s)	439
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	349
Eco57I	CTGAAG	2 cut(s)	266, 492
Eco81I	CCTNAGG	1 cut(s)	865
EcoRV	GATATC	1 cut(s)	406
FaeI	CATG	2 cut(s)	151, 228
FalI	AAGNNNNNCTT	2 cut(s)	662, 694
FatI	CATG	2 cut(s)	147, 224
Fnu4HI	GCNGC	4 cut(s)	41, 44, 675, 895
FokI	GGATG	3 cut(s)	165, 636, 940
Fsp4HI	GCNGC	4 cut(s)	41, 44, 675, 895
FspBI	CTAG	2 cut(s)	270, 372
GluI	GCNGC	4 cut(s)	41, 44, 675, 895
HaeIII	GGCC	1 cut(s)	956
HapII	CCGG	3 cut(s)	196, 580, 915
HgaI	GACGC	1 cut(s)	886
Hin1II	CATG	2 cut(s)	151, 228
HincII	GTYRAC	1 cut(s)	961
HindII	GTYRAC	1 cut(s)	961
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	6 cut(s)	108, 160, 191, 287, 329, 604
HpaII	CCGG	3 cut(s)	196, 580, 915
HphI	GGTGA	2 cut(s)	91, 608
Hpy166II	GTNNAC	3 cut(s)	642, 708, 961
Hpy188III	TCNNGA	5 cut(s)	58, 176, 270, 347, 838
Hpy8I	GTNNAC	3 cut(s)	642, 708, 961
Hpy99I	CGWCG	2 cut(s)	27, 902
HpyAV	CCTTC	4 cut(s)	70, 688, 818, 946
HpyCH4V	TGCA	5 cut(s)	102, 542, 577, 773, 797
HpyF10VI	GCNNNNNNNGC	5 cut(s)	49, 121, 134, 574, 803
HpyF3I	CTNAG	4 cut(s)	335, 669, 698, 865
Hsp92II	CATG	2 cut(s)	151, 228
KpnI	GGTACC	1 cut(s)	941
Kzo9I	GATC	4 cut(s)	54, 68, 238, 586
LmnI	GCTCC	2 cut(s)	9, 811
Lsp1109I	GCAGC	3 cut(s)	27, 686, 881
LweI	GCATC	6 cut(s)	111, 454, 551, 734, 864, 918
MaeI	CTAG	2 cut(s)	270, 372
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	4 cut(s)	56, 70, 240, 588
MboI	GATC	4 cut(s)	54, 68, 238, 586
MboII	GAAGA	5 cut(s)	233, 428, 498, 673, 776
MhlI	GDGCHC	2 cut(s)	126, 808
MluCI	AATT	4 cut(s)	341, 392, 444, 515
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	2 cut(s)	5, 46
MnlI	CCTC	5 cut(s)	30, 288, 330, 579, 863
MseI	TTAA	2 cut(s)	438, 447
MslI	CAYNNNNRTG	2 cut(s)	773, 947
MspA1I	CMGCKG	1 cut(s)	894
MspI	CCGG	3 cut(s)	196, 580, 915
MspR9I	CCNGG	2 cut(s)	196, 916
MwoI	GCNNNNNNNGC	5 cut(s)	49, 121, 134, 574, 803
NciI	CCSGG	2 cut(s)	196, 916
NdeII	GATC	4 cut(s)	54, 68, 238, 586
NlaIII	CATG	2 cut(s)	151, 228
NlaIV	GGNNCC	2 cut(s)	20, 939
NmeAIII	GCCGAG	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	161
OliI	CACNNNNGTG	1 cut(s)	947
PfeI	GAWTC	5 cut(s)	108, 191, 287, 329, 604
PfoI	TCCNGGA	1 cut(s)	194
PkrI	GCNGC	4 cut(s)	42, 45, 676, 896
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
PsiI	TTATAA	1 cut(s)	743
PspN4I	GGNNCC	2 cut(s)	20, 939
PspPI	GGNCC	1 cut(s)	349
PstNI	CAGNNNCTG	3 cut(s)	40, 52, 759
PvuII	CAGCTG	1 cut(s)	894
RsaI	GTAC	8 cut(s)	33, 360, 649, 663, 695, 707, 862, 939
RsaNI	GTAC	8 cut(s)	32, 359, 648, 662, 694, 706, 861, 938
RseI	CAYNNNNRTG	2 cut(s)	773, 947
SaqAI	TTAA	2 cut(s)	438, 447
SatI	GCNGC	4 cut(s)	41, 44, 675, 895
Sau3AI	GATC	4 cut(s)	54, 68, 238, 586
Sau96I	GGNCC	1 cut(s)	349
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	2 cut(s)	196, 916
SduI	GDGCHC	2 cut(s)	126, 808
SfaNI	GCATC	6 cut(s)	111, 454, 551, 734, 864, 918
SinI	GGWCC	1 cut(s)	349
SmiMI	CAYNNNNRTG	2 cut(s)	773, 947
Sse9I	AATT	4 cut(s)	341, 392, 444, 515
SsiI	CCGC	1 cut(s)	43
SspI	AATATT	1 cut(s)	834
SspMI	CTAG	2 cut(s)	270, 372
StyD4I	CCNGG	2 cut(s)	194, 914
TaqI	TCGA	7 cut(s)	59, 71, 133, 480, 525, 837, 900
TasI	AATT	4 cut(s)	341, 392, 444, 515
TatI	WGTACW	2 cut(s)	358, 705
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	5 cut(s)	108, 191, 287, 329, 604
Tru1I	TTAA	2 cut(s)	438, 447
Tru9I	TTAA	2 cut(s)	438, 447
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	3 cut(s)	40, 674, 894
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	4 cut(s)	89, 136, 233, 729
TspGWI	ACGGA	3 cut(s)	312, 937, 940
TspRI	CASTG	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	2 cut(s)	341, 515
XbaI	TCTAGA	1 cut(s)	269
XspI	CTAG	2 cut(s)	270, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.