Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0013433

Physical Location & Seq

Genomic Coordinates Forward (+)

22057709 .. 22060468

Gene Structure 2760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g19780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGAGGGAGCGTGTGGAACCGTAGGACGGTACAGAGGCTGCGGCAGCTGCTGATCTCGACCGTTGGATCGATGAGGGTCAAGCTTCTGCTGTGCTGTTGCATCGGATTCACGTTCATCGTGCTCGCCAATCGAGCTTCGGATTTTATGGGATGGACGAGTCACACTGCGGTTCTGGAACGGTCCTCGGATTCACGGAAAGGGTATTCTATTGTAATGAACACATGGAAGAGATATGATCTTCTGAAGCAGTCTATTTCTCACTATTCTCAATGCCCTCGGCTTGATTCAATACATATTGTGTGGAGTGAGCCAAGTCCTCCGTCCGATTCTCTGACAAAATTTCTGGATCACATTGTACATCTGAACACGAGAGATAGGCGACAAGTTGAATTGAAATATGATATCAACAAGGAAGACAGTTTGAACAACAGATTTAAAGAAATTAAGGATTTGAGAACAGATGCTGTTTTTTCAATTGACGATGATGTTATATTCCCTTGTTCTTCAGTAGAATTTGCTTTTGATGTTTGGCAAAGTGCATCGGATACAATGGTTGGATTTGTGCCTCGGATGCACTGGGTTGATCCGAAAGGTGATGAGAATCACTACATATATGGTGGATGGTGGTCAGTTTGGTGGACGGGTACATACAGTATGGTACTGTCTAAGGCAGCCTTCTTCCACAAAAAGTACCTGAGTTTATACACAAATGAAATGCCAGCTTCAATCAAAGAATTTATTACCAAGAACAGGAACTGTGAAGACATTGCAATGTCCTTTCTTGTAGCAAATGTAACTAATGCTCCCCCTATATGGGTGAAAGGTAAAATATTCGAGATTGGTTCAACTGGTATCAGTACCTTAGGAGGTCATACTGAAAAAAGAACCAACTGTGTCGATAGATTTGTTGCCGAGTTTGGACGAATGCCACTGGTACCCACATCTGTGAAGGCTGTTGACAGTCGAAACATCTGGTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008219 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010383 GO:0010393 GO:0010395 GO:0010400 GO:0010401 GO:0012505 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0030243 GO:0031410 GO:0031982 GO:0031984 GO:0032502 GO:0033993 GO:0035251 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0046527 GO:0048856 GO:0050896 GO:0051273 GO:0052541 GO:0052546 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:0097708 GO:0098791 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

329

Amino Acids

37.9

Weight (kDa)

8.99

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_64	PF09258	69 - 321	4.2e-79	Glycosyl transferase family 64 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55830
fragaria_vesca	FvH4_7g24130
malus_domestica	MD01G1148500.v1.1 MD07G1215500.v1.1
prunus_persica	Prupe.2G247400_v2.0.a1 Prupe.2G247400_v2.0.a1
pyrus_communis	pycom01g16710 pycom07g19780
rosa_chinensis	RchiOBHm_Chr1g0369551
rosa_laevigata	RLG00000027119
rosa_multiflora	Rmu_sc0001154.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287530
rosa_rugosa	Rorug01G0351100
rosa_samantha	Rh1AG359400 Rh1BG323100 Rh1CG336400 Rh1DG353900
rosa_wichuraiana	Rw1G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	937
AccB1I	GGYRCC	1 cut(s)	937
AciI	CCGC	2 cut(s)	43, 170
AclWI	GGATC	3 cut(s)	76, 357, 581
AcsI	RAATTY	3 cut(s)	341, 515, 737
AcuI	CTGAAG	2 cut(s)	266, 492
AfaI	GTAC	7 cut(s)	33, 360, 649, 663, 695, 862, 939
AfiI	CCNNNNNNNGG	4 cut(s)	28, 753, 816, 817
AgsI	TTSAA	7 cut(s)	291, 392, 397, 427, 477, 729, 849
AleI	CACNNNNGTG	1 cut(s)	947
AluBI	AGCT	4 cut(s)	49, 85, 137, 725
AluI	AGCT	4 cut(s)	49, 85, 137, 725
Alw21I	GWGCWC	1 cut(s)	126
AlwI	GGATC	3 cut(s)	76, 357, 581
AlwNI	CAGNNNCTG	4 cut(s)	40, 52, 467, 759
ApeKI	GCWGC	4 cut(s)	40, 46, 49, 674
ApoI	RAATTY	3 cut(s)	341, 515, 737
Asp718I	GGTACC	1 cut(s)	937
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	608, 832
AvaII	GGWCC	1 cut(s)	183
AxyI	CCTNAGG	1 cut(s)	865
BaeI	ACNNNNGTAYC	2 cut(s)	540, 573
BanI	GGYRCC	1 cut(s)	937
BauI	CACGAG	1 cut(s)	370
BbsI	GAAGAC	2 cut(s)	423, 771
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	4 cut(s)	27, 36, 58, 686
BccI	CCATC	2 cut(s)	147, 618
BciVI	GTATCC	1 cut(s)	541
BfuI	GTATCC	1 cut(s)	541
BisI	GCNGC	5 cut(s)	41, 44, 47, 50, 675
BlsI	GCNGC	5 cut(s)	42, 45, 48, 51, 676
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	2 cut(s)	20, 939
BmrI	ACTGGG	1 cut(s)	589
BmsI	GCATC	4 cut(s)	111, 454, 551, 564
BmuI	ACTGGG	1 cut(s)	589
BpiI	GAAGAC	2 cut(s)	423, 771
Bsa29I	ATCGAT	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	603
BsaJI	CCNNGG	3 cut(s)	186, 278, 569
BsaXI	ACNNNNNCTCC	2 cut(s)	790, 820
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 753, 816, 817
Bse1I	ACTGG	3 cut(s)	584, 856, 939
Bse21I	CCTNAGG	1 cut(s)	865
Bse3DI	GCAATG	2 cut(s)	768, 780
Bse8I	GATNNNNATC	1 cut(s)	603
BseCI	ATCGAT	1 cut(s)	71
BseDI	CCNNGG	3 cut(s)	186, 278, 569
BseGI	GGATG	3 cut(s)	158, 579, 629
BseJI	GATNNNNATC	1 cut(s)	603
BseLI	CCNNNNNNNGG	4 cut(s)	28, 753, 816, 817
BseMI	GCAATG	2 cut(s)	768, 780
BseMII	CTCAG	1 cut(s)	689
BseNI	ACTGG	3 cut(s)	584, 856, 939
BseXI	GCAGC	4 cut(s)	27, 36, 58, 686
Bsh1285I	CGRYCG	1 cut(s)	63
BshNI	GGYRCC	1 cut(s)	937
BshVI	ATCGAT	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	126
BslI	CCNNNNNNNGG	4 cut(s)	28, 753, 816, 817
BsmI	GAATGC	1 cut(s)	933
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp1407I	TGTACA	1 cut(s)	358
Bsp143I	GATC	5 cut(s)	54, 68, 238, 349, 586
BspACI	CCGC	2 cut(s)	43, 170
BspCNI	CTCAG	1 cut(s)	690
BspDI	ATCGAT	1 cut(s)	71
BspLI	GGNNCC	2 cut(s)	20, 939
BspPI	GGATC	3 cut(s)	76, 357, 581
BspT107I	GGYRCC	1 cut(s)	937
BsrDI	GCAATG	2 cut(s)	768, 780
BsrGI	TGTACA	1 cut(s)	358
BsrI	ACTGG	3 cut(s)	584, 856, 939
BssECI	CCNNGG	3 cut(s)	186, 278, 569
BssMI	GATC	5 cut(s)	54, 68, 238, 349, 586
BssSI	CACGAG	1 cut(s)	370
Bst2BI	CACGAG	1 cut(s)	370
Bst6I	CTCTTC	1 cut(s)	224
BstAUI	TGTACA	1 cut(s)	358
BstC8I	GCNNGC	2 cut(s)	126, 723
BstDEI	CTNAG	3 cut(s)	669, 698, 865
BstF5I	GGATG	3 cut(s)	158, 579, 629
BstKTI	GATC	5 cut(s)	57, 71, 241, 352, 589
BstMBI	GATC	5 cut(s)	54, 68, 238, 349, 586
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	4 cut(s)	46, 49, 134, 574
BstV1I	GCAGC	4 cut(s)	27, 36, 58, 686
BstV2I	GAAGAC	2 cut(s)	423, 771
Bsu15I	ATCGAT	1 cut(s)	71
Bsu36I	CCTNAGG	1 cut(s)	865
BsuI	GTATCC	1 cut(s)	541
BsuTUI	ATCGAT	1 cut(s)	71
BtsCI	GGATG	3 cut(s)	158, 579, 629
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	3 cut(s)	165, 577, 932
Cac8I	GCNNGC	2 cut(s)	126, 723
CaiI	CAGNNNCTG	4 cut(s)	40, 52, 467, 759
Cfr13I	GGNCC	1 cut(s)	183
ClaI	ATCGAT	1 cut(s)	71
Csp6I	GTAC	7 cut(s)	32, 359, 648, 662, 694, 861, 938
CviAII	CATG	1 cut(s)	225
CviJI	RGCY	9 cut(s)	40, 49, 85, 137, 283, 313, 677, 725, 956
CviKI_1	RGCY	9 cut(s)	40, 49, 85, 137, 283, 313, 677, 725, 956
CviQI	GTAC	7 cut(s)	32, 359, 648, 662, 694, 861, 938
DdeI	CTNAG	3 cut(s)	669, 698, 865
DpnI	GATC	5 cut(s)	56, 70, 240, 351, 588
DpnII	GATC	5 cut(s)	54, 68, 238, 349, 586
DraI	TTTAAA	1 cut(s)	439
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	183
Eco57I	CTGAAG	2 cut(s)	266, 492
Eco81I	CCTNAGG	1 cut(s)	865
EcoRV	GATATC	1 cut(s)	406
FaeI	CATG	1 cut(s)	228
FalI	AAGNNNNNCTT	2 cut(s)	662, 694
FatI	CATG	1 cut(s)	224
Fnu4HI	GCNGC	5 cut(s)	41, 44, 47, 50, 675
FokI	GGATG	3 cut(s)	165, 586, 636
Fsp4HI	GCNGC	5 cut(s)	41, 44, 47, 50, 675
GluI	GCNGC	5 cut(s)	41, 44, 47, 50, 675
Hin1II	CATG	1 cut(s)	228
HincII	GTYRAC	1 cut(s)	961
HindII	GTYRAC	1 cut(s)	961
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	6 cut(s)	108, 160, 191, 287, 329, 604
HphI	GGTGA	2 cut(s)	608, 832
Hpy166II	GTNNAC	2 cut(s)	642, 961
Hpy188III	TCNNGA	4 cut(s)	58, 176, 347, 838
Hpy8I	GTNNAC	2 cut(s)	642, 961
HpyAV	CCTTC	2 cut(s)	688, 946
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	4 cut(s)	102, 542, 577, 773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	46, 49, 134, 574
HpyF3I	CTNAG	3 cut(s)	669, 698, 865
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	228
KpnI	GGTACC	1 cut(s)	941
Kzo9I	GATC	5 cut(s)	54, 68, 238, 349, 586
LmnI	GCTCC	2 cut(s)	9, 811
LpnPI	CCDG	9 cut(s)	161, 332, 565, 710, 735, 739, 837, 920, 961
Lsp1109I	GCAGC	4 cut(s)	27, 36, 58, 686
LweI	GCATC	4 cut(s)	111, 454, 551, 564
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	2 cut(s)	161, 796
MalI	GATC	5 cut(s)	56, 70, 240, 351, 588
MboI	GATC	5 cut(s)	54, 68, 238, 349, 586
MboII	GAAGA	6 cut(s)	233, 241, 428, 498, 673, 776
MfeI	CAATTG	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	6 cut(s)	341, 392, 444, 477, 515, 737
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	2 cut(s)	46, 538
MnlI	CCTC	7 cut(s)	30, 69, 196, 288, 330, 579, 863
MseI	TTAA	2 cut(s)	438, 447
MslI	CAYNNNNRTG	2 cut(s)	773, 947
MspA1I	CMGCKG	1 cut(s)	49
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	933
MwoI	GCNNNNNNNGC	4 cut(s)	46, 49, 134, 574
NdeII	GATC	5 cut(s)	54, 68, 238, 349, 586
NlaIII	CATG	1 cut(s)	228
NlaIV	GGNNCC	2 cut(s)	20, 939
NmeAIII	GCCGAG	2 cut(s)	259, 940
NmuCI	GTSAC	1 cut(s)	161
OliI	CACNNNNGTG	1 cut(s)	947
PctI	GAATGC	1 cut(s)	933
PfeI	GAWTC	5 cut(s)	108, 191, 287, 329, 604
PkrI	GCNGC	5 cut(s)	42, 45, 48, 51, 676
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
PspN4I	GGNNCC	2 cut(s)	20, 939
PspPI	GGNCC	1 cut(s)	183
PstNI	CAGNNNCTG	4 cut(s)	40, 52, 467, 759
PvuII	CAGCTG	1 cut(s)	49
RsaI	GTAC	7 cut(s)	33, 360, 649, 663, 695, 862, 939
RsaNI	GTAC	7 cut(s)	32, 359, 648, 662, 694, 861, 938
RseI	CAYNNNNRTG	2 cut(s)	773, 947
SaqAI	TTAA	2 cut(s)	438, 447
SatI	GCNGC	5 cut(s)	41, 44, 47, 50, 675
Sau3AI	GATC	5 cut(s)	54, 68, 238, 349, 586
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	126
SfaNI	GCATC	4 cut(s)	111, 454, 551, 564
SinI	GGWCC	1 cut(s)	183
SmiMI	CAYNNNNRTG	2 cut(s)	773, 947
Sse9I	AATT	6 cut(s)	341, 392, 444, 477, 515, 737
SsiI	CCGC	2 cut(s)	43, 170
SspI	AATATT	1 cut(s)	834
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	6 cut(s)	59, 71, 133, 837, 900, 967
TasI	AATT	6 cut(s)	341, 392, 444, 477, 515, 737
TatI	WGTACW	1 cut(s)	358
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	5 cut(s)	108, 191, 287, 329, 604
Tru1I	TTAA	2 cut(s)	438, 447
Tru9I	TTAA	2 cut(s)	438, 447
TscAI	CASTG	3 cut(s)	172, 584, 939
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	4 cut(s)	40, 46, 49, 674
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	3 cut(s)	106, 233, 729
TspGWI	ACGGA	2 cut(s)	211, 312
TspRI	CASTG	3 cut(s)	172, 584, 939
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	3 cut(s)	341, 515, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.