Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013433

Physical Location & Seq

Genomic Coordinates Forward (+)

18659321 .. 18662621

Gene Structure 3301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAACCGGCGAGGAGTTCAGAGGTTCCGGCAGGCGCTGATCTCGACCGTGGGATCGGTCAAGATTAAGCTCGTGCTCGGATTCTGCATCGGTTTTACTCTCATCGCGCTTGCCGGCCGTGCGTCGGGGTTTATGGGGTGGACGAGTCACAGTGCCTCTCTGGAACGGTACTCCGGTTCGAGCAAAGGATATGCTATTGTAATGAACACATGGAAGAGATACGATCTTTTGAAGCAGTCTATTTCTCACTATTCCAGATGTCCTCGGCTTGATTCGATACATATTGTGTGGAGTGAGCCGAGTCCTCCTTCAGATTCTCTGAAAAAGTTTCTTTACCACATTATAGAGTTGAACACTAGAGATGGGAGACAAGTTAAGTTAAAGTTCGACATCAATAAGGAAGATAGTTTGAACAACAGGTTTAAAGAAATTCCAGACTTGGAAACGGATGCTGTTTTTTCTATTGACGATGATGTCATATTCCCATGCTCTTCTGTTGAATTTGCTTTTGATGTTTGGCAAAGTGCATCAGATACTATGGTTGGCTTTGTGCCTCGTATGCACTGGGTTGATCCCACGAATGGTCATATGGATCATTACATATATGGTGGATGGTGGTCGGTTTGGTGGACTGGTACATACAGTATGGTACTGTCTAAGGCAGCCTTCTTCCACAAAAAGTATCTAAAACTCTATACAAATGAAATGCCAGCATCAATCAAAGACTTTATAACCAAGAACAGGAACTGTGAAGACATTGCGATGTCTTTTCTTGTAGCAAATGTGACTGGCGCTCCTCCTATATGGGTTAAAGGTAAGATATTTGAGATTGGATCAACTGGAATCAGTAGCAGTGGAGGCCATATTGAAAAAAGAACCCACTGTGTTGATAGATTTGCTGCTGAGTTTGGGCGGATGCCATTGGTACCTACTTCTGTGAAAGCTGTTGACAGTCGCAATATCTGGTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008219 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010383 GO:0010393 GO:0010395 GO:0010400 GO:0010401 GO:0012505 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0030243 GO:0031410 GO:0031982 GO:0031984 GO:0032502 GO:0033993 GO:0035251 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0046527 GO:0048856 GO:0050896 GO:0051273 GO:0052541 GO:0052546 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:0097708 GO:0098791 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

325

Amino Acids

36.91

Weight (kDa)

9.17

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_64	PF09258	64 - 317	1.9e-79	Glycosyl transferase family 64 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55830
fragaria_vesca	FvH4_7g24130
malus_domestica	MD01G1148500.v1.1 MD07G1215500.v1.1
prunus_persica	Prupe.2G247400_v2.0.a1 Prupe.2G247400_v2.0.a1
pyrus_communis	pycom01g16710 pycom07g19780
rosa_chinensis	RchiOBHm_Chr1g0369551
rosa_laevigata	RLG00000027119
rosa_multiflora	Rmu_sc0001154.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287530
rosa_rugosa	Rorug01G0351100
rosa_samantha	Rh1AG359400 Rh1BG323100 Rh1CG336400 Rh1DG353900
rosa_wichuraiana	Rw1G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	731
AasI	GACNNNNNNGTC	1 cut(s)	473
Acc65I	GGTACC	1 cut(s)	925
AccB1I	GGYRCC	1 cut(s)	925
AccII	CGCG	1 cut(s)	107
AciI	CCGC	1 cut(s)	913
AclWI	GGATC	4 cut(s)	61, 566, 600, 841
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	2 cut(s)	429, 500
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	4 cut(s)	170, 637, 651, 927
AfiI	CCNNNNNNNGG	3 cut(s)	124, 581, 741
AgsI	TTSAA	5 cut(s)	232, 352, 412, 500, 869
AluBI	AGCT	2 cut(s)	70, 944
AluI	AGCT	2 cut(s)	70, 944
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	4 cut(s)	61, 566, 600, 841
AlwNI	CAGNNNCTG	2 cut(s)	37, 747
AoxI	GGCC	2 cut(s)	115, 859
ApeKI	GCWGC	2 cut(s)	662, 899
ApoI	RAATTY	2 cut(s)	429, 500
Asp718I	GGTACC	1 cut(s)	925
AspLEI	GCGC	3 cut(s)	37, 109, 794
BaeI	ACNNNNGTAYC	4 cut(s)	160, 193, 525, 558
BanI	GGYRCC	1 cut(s)	925
BauI	CACGAG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	759
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	674, 886
BccI	CCATC	2 cut(s)	356, 606
BceAI	ACGGC	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	357
BfoI	RGCGCY	2 cut(s)	38, 795
BisI	GCNGC	2 cut(s)	663, 900
BlsI	GCNGC	2 cut(s)	664, 901
BmiI	GGNNCC	2 cut(s)	26, 927
BmrI	ACTGGG	1 cut(s)	574
BmsI	GCATC	5 cut(s)	96, 439, 536, 722, 906
BmuI	ACTGGG	1 cut(s)	574
BpiI	GAAGAC	1 cut(s)	759
BsaJI	CCNNGG	2 cut(s)	48, 263
BsaWI	WCCGGW	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	778, 808
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 581, 741
Bse118I	RCCGGY	2 cut(s)	6, 113
Bse1I	ACTGG	4 cut(s)	569, 637, 793, 844
Bse3DI	GCAATG	1 cut(s)	756
BseDI	CCNNGG	2 cut(s)	48, 263
BseGI	GGATG	3 cut(s)	454, 617, 921
BseLI	CCNNNNNNNGG	3 cut(s)	124, 581, 741
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	1 cut(s)	894
BseNI	ACTGG	4 cut(s)	569, 637, 793, 844
BseRI	GAGGAG	2 cut(s)	27, 786
BseX3I	CGGCCG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	674, 886
Bsh1236I	CGCG	1 cut(s)	107
Bsh1285I	CGRYCG	2 cut(s)	48, 118
BshFI	GGCC	2 cut(s)	117, 861
BshNI	GGYRCC	1 cut(s)	925
BsiEI	CGRYCG	2 cut(s)	48, 118
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	4 cut(s)	7, 28, 114, 174
BslI	CCNNNNNNNGG	3 cut(s)	124, 581, 741
BsmAI	GTCTC	1 cut(s)	361
BsnI	GGCC	2 cut(s)	117, 861
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	6 cut(s)	39, 53, 223, 571, 592, 833
BspACI	CCGC	1 cut(s)	913
BspANI	GGCC	2 cut(s)	117, 861
BspCNI	CTCAG	1 cut(s)	895
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	2 cut(s)	26, 927
BspPI	GGATC	4 cut(s)	61, 566, 600, 841
BspQI	GCTCTTC	1 cut(s)	496
BspT107I	GGYRCC	1 cut(s)	925
BsrDI	GCAATG	1 cut(s)	756
BsrFI	RCCGGY	2 cut(s)	6, 113
BsrI	ACTGG	4 cut(s)	569, 637, 793, 844
BssAI	RCCGGY	2 cut(s)	6, 113
BssECI	CCNNGG	2 cut(s)	48, 263
BssMI	GATC	6 cut(s)	39, 53, 223, 571, 592, 833
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst4CI	ACNGT	8 cut(s)	49, 152, 168, 644, 654, 749, 884, 953
Bst6I	CTCTTC	2 cut(s)	209, 496
BstC8I	GCNNGC	4 cut(s)	33, 111, 115, 711
BstDEI	CTNAG	2 cut(s)	657, 903
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	3 cut(s)	454, 617, 921
BstFNI	CGCG	1 cut(s)	107
BstH2I	RGCGCY	2 cut(s)	38, 795
BstHHI	GCGC	3 cut(s)	37, 109, 794
BstKTI	GATC	6 cut(s)	42, 56, 226, 574, 595, 836
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	6 cut(s)	39, 53, 223, 571, 592, 833
BstMCI	CGRYCG	2 cut(s)	48, 118
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 559, 858
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	674, 886
BstV2I	GAAGAC	1 cut(s)	759
BstZI	CGGCCG	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	117, 861
BtgI	CCRYGG	1 cut(s)	48
BtgZI	GCGATG	2 cut(s)	88, 776
BtsCI	GGATG	3 cut(s)	454, 617, 921
BtsI	GCAGTG	1 cut(s)	859
BtsIMutI	CAGTG	4 cut(s)	157, 562, 859, 880
Cac8I	GCNNGC	4 cut(s)	33, 111, 115, 711
CaiI	CAGNNNCTG	2 cut(s)	37, 747
CfoI	GCGC	3 cut(s)	37, 109, 794
Cfr10I	RCCGGY	2 cut(s)	6, 113
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	4 cut(s)	169, 636, 650, 926
CviAII	CATG	2 cut(s)	210, 486
CviJI	RGCY	8 cut(s)	70, 117, 268, 298, 546, 665, 861, 944
CviKI_1	RGCY	8 cut(s)	70, 117, 268, 298, 546, 665, 861, 944
CviQI	GTAC	4 cut(s)	169, 636, 650, 926
DdeI	CTNAG	2 cut(s)	657, 903
DpnI	GATC	6 cut(s)	41, 55, 225, 573, 594, 835
DpnII	GATC	6 cut(s)	39, 53, 223, 571, 592, 833
DraI	TTTAAA	1 cut(s)	424
DrdI	GACNNNNNNGTC	1 cut(s)	473
DseDI	GACNNNNNNGTC	1 cut(s)	473
EaeI	YGGCCR	1 cut(s)	115
EagI	CGGCCG	1 cut(s)	115
Eam1104I	CTCTTC	2 cut(s)	209, 496
EarI	CTCTTC	2 cut(s)	209, 496
EciI	GGCGGA	1 cut(s)	928
EclXI	CGGCCG	1 cut(s)	115
Eco52I	CGGCCG	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	294
FaeI	CATG	2 cut(s)	213, 489
FalI	AAGNNNNNCTT	2 cut(s)	650, 682
FatI	CATG	2 cut(s)	209, 485
FauNDI	CATATG	1 cut(s)	588
Fnu4HI	GCNGC	2 cut(s)	663, 900
FokI	GGATG	3 cut(s)	461, 624, 928
Fsp4HI	GCNGC	2 cut(s)	663, 900
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	3 cut(s)	36, 108, 793
GluI	GCNGC	2 cut(s)	663, 900
HaeII	RGCGCY	2 cut(s)	38, 795
HaeIII	GGCC	2 cut(s)	117, 861
HapII	CCGG	4 cut(s)	7, 28, 114, 174
HgaI	GACGC	1 cut(s)	111
HhaI	GCGC	3 cut(s)	37, 109, 794
Hin1II	CATG	2 cut(s)	213, 489
Hin6I	GCGC	3 cut(s)	35, 107, 792
HinP1I	GCGC	3 cut(s)	35, 107, 792
HincII	GTYRAC	1 cut(s)	949
HindII	GTYRAC	1 cut(s)	949
HinfI	GANTC	6 cut(s)	81, 145, 272, 301, 314, 843
HpaII	CCGG	4 cut(s)	7, 28, 114, 174
Hpy166II	GTNNAC	3 cut(s)	141, 630, 949
Hpy188I	TCNGA	5 cut(s)	21, 80, 313, 321, 532
Hpy188III	TCNNGA	5 cut(s)	43, 61, 161, 255, 434
Hpy8I	GTNNAC	3 cut(s)	141, 630, 949
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	318, 676
HpyCH4III	ACNGT	8 cut(s)	49, 152, 168, 644, 654, 749, 884, 953
HpyCH4V	TGCA	3 cut(s)	87, 527, 562
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 559, 858
HpyF3I	CTNAG	2 cut(s)	657, 903
Hsp92II	CATG	2 cut(s)	213, 489
HspAI	GCGC	3 cut(s)	35, 107, 792
KpnI	GGTACC	1 cut(s)	929
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Kzo9I	GATC	6 cut(s)	39, 53, 223, 571, 592, 833
LguI	GCTCTTC	1 cut(s)	496
LmnI	GCTCC	1 cut(s)	799
Lsp1109I	GCAGC	2 cut(s)	674, 886
LweI	GCATC	5 cut(s)	96, 439, 536, 722, 906
MaeI	CTAG	1 cut(s)	357
MaeIII	GTNAC	2 cut(s)	146, 784
MalI	GATC	6 cut(s)	41, 55, 225, 573, 594, 835
MboI	GATC	6 cut(s)	39, 53, 223, 571, 592, 833
MboII	GAAGA	5 cut(s)	226, 413, 483, 661, 764
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	2 cut(s)	429, 500
MlyI	GAGTC	2 cut(s)	154, 310
MnlI	CCTC	8 cut(s)	5, 15, 166, 273, 315, 564, 807, 851
MroNI	GCCGGC	1 cut(s)	113
MseI	TTAA	5 cut(s)	66, 375, 380, 423, 810
MslI	CAYNNNNRTG	1 cut(s)	761
MspI	CCGG	4 cut(s)	7, 28, 114, 174
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	3 cut(s)	119, 559, 858
NaeI	GCCGGC	1 cut(s)	115
NdeI	CATATG	1 cut(s)	588
NdeII	GATC	6 cut(s)	39, 53, 223, 571, 592, 833
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	2 cut(s)	213, 489
NlaIV	GGNNCC	2 cut(s)	26, 927
NmeAIII	GCCGAG	2 cut(s)	244, 324
NmuCI	GTSAC	2 cut(s)	146, 784
PciSI	GCTCTTC	1 cut(s)	496
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	4 cut(s)	81, 272, 314, 843
PkrI	GCNGC	2 cut(s)	664, 901
PleI	GAGTC	2 cut(s)	153, 309
PpsI	GAGTC	2 cut(s)	153, 309
PsiI	TTATAA	1 cut(s)	731
PspN4I	GGNNCC	2 cut(s)	26, 927
PstNI	CAGNNNCTG	2 cut(s)	37, 747
RsaI	GTAC	4 cut(s)	170, 637, 651, 927
RsaNI	GTAC	4 cut(s)	169, 636, 650, 926
RseI	CAYNNNNRTG	1 cut(s)	761
SapI	GCTCTTC	1 cut(s)	496
SaqAI	TTAA	5 cut(s)	66, 375, 380, 423, 810
SatI	GCNGC	2 cut(s)	663, 900
Sau3AI	GATC	6 cut(s)	39, 53, 223, 571, 592, 833
SchI	GAGTC	2 cut(s)	154, 310
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	6 cut(s)	26, 72, 422, 817, 931, 946
SfaNI	GCATC	5 cut(s)	96, 439, 536, 722, 906
SmiMI	CAYNNNNRTG	1 cut(s)	761
Sse9I	AATT	2 cut(s)	429, 500
SsiI	CCGC	1 cut(s)	913
SspMI	CTAG	1 cut(s)	357
TaaI	ACNGT	8 cut(s)	49, 152, 168, 644, 654, 749, 884, 953
TaqI	TCGA	4 cut(s)	44, 179, 275, 387
TaqII	GACCGA	1 cut(s)	46
TasI	AATT	2 cut(s)	429, 500
TfiI	GAWTC	4 cut(s)	81, 272, 314, 843
Tru1I	TTAA	5 cut(s)	66, 375, 380, 423, 810
Tru9I	TTAA	5 cut(s)	66, 375, 380, 423, 810
TscAI	CASTG	4 cut(s)	157, 569, 859, 887
TseFI	GTSAC	2 cut(s)	146, 784
TseI	GCWGC	2 cut(s)	662, 899
Tsp45I	GTSAC	2 cut(s)	146, 784
TspDTI	ATGAA	3 cut(s)	17, 218, 717
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	4 cut(s)	157, 569, 859, 887
XapI	RAATTY	2 cut(s)	429, 500
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.