Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0013433

Physical Location & Seq

Genomic Coordinates Forward (+)

59420211 .. 59423970

Gene Structure 3760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG359400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAACACATGGAAGAGATACGATCTTTTGAAGCAGTCAATTTCTCACTATTCCAGGTGTCCACGGCTTGATTCGATACATATTGTGTGGAGTGAACCAAATCCTCCATCAGATTCTCTGAAAAAAATTCTAAACCACATTATAGAGTTGAACACTAGAGATGGACGACAAGTTAAATTGAAATTTGATATCAATAGGGAAGACAGTTTGAACAACAGATTTAAAGAAATTCCAGATTTGGAAACAGATGCTGTCTTTTCTATCGATGATGATGTCATATTCCCTTGCTCTTCTGTAGAATTTGCTTTCGATGTTTGGCAAAGTGCATCAGATACTATGGTTGGCTTTGTGCCTCGTATGCACTGGGTTGATCCCACGAATGGTCATATGGATCATTACATATATGGTGGATGGTGGTCGGTTTGGTGGACTGGTACATACAGTATGGTACTCTCTAAGGCAGCCTTCTTCCACAAAAAGTACCTAAGAATCTACACAAATGAAATGCCAGCATCAATCAAAGACTTTATAACCAAGAACAGGAACTGTGAAGACATTGCAATGTCTTTTCTTGTAGCAAATGTGACTGGTGCTCCCCCTATATGGGTTAAAGGTAATCCTATATCCTATAATTTACATAGTTGTAAGTTTGAGTCCTTGCATCTTCTTGTGTGTCCTTTGTATTATATGCTGTGCAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008219 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010383 GO:0010393 GO:0010395 GO:0010400 GO:0010401 GO:0012505 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0030243 GO:0031410 GO:0031982 GO:0031984 GO:0032502 GO:0033993 GO:0035251 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0046527 GO:0048856 GO:0050896 GO:0051273 GO:0052541 GO:0052546 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:0097708 GO:0098791 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

234

Amino Acids

27.34

Weight (kDa)

6.3

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_64	PF09258	1 - 204	3e-66	Glycosyl transferase family 64 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55830
fragaria_vesca	FvH4_7g24130
malus_domestica	MD01G1148500.v1.1 MD07G1215500.v1.1
prunus_persica	Prupe.2G247400_v2.0.a1 Prupe.2G247400_v2.0.a1
pyrus_communis	pycom01g16710 pycom07g19780
rosa_chinensis	RchiOBHm_Chr1g0369551
rosa_laevigata	RLG00000027119
rosa_multiflora	Rmu_sc0001154.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287530
rosa_rugosa	Rorug01G0351100
rosa_samantha	Rh1AG359400 Rh1BG323100 Rh1CG336400 Rh1DG353900
rosa_wichuraiana	Rw1G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	530
AclWI	GGATC	2 cut(s)	365, 399
AcsI	RAATTY	4 cut(s)	126, 182, 228, 299
AfaI	GTAC	3 cut(s)	436, 450, 482
AfiI	CCNNNNNNNGG	4 cut(s)	380, 540, 603, 604
AgsI	TTSAA	4 cut(s)	31, 151, 181, 211
AjnI	CCWGG	1 cut(s)	53
Alw21I	GWGCWC	1 cut(s)	595
AlwI	GGATC	2 cut(s)	365, 399
AlwNI	CAGNNNCTG	2 cut(s)	251, 546
ApeKI	GCWGC	1 cut(s)	461
ApoI	RAATTY	4 cut(s)	126, 182, 228, 299
BaeI	ACNNNNGTAYC	2 cut(s)	324, 357
BbsI	GAAGAC	2 cut(s)	207, 558
Bbv12I	GWGCWC	1 cut(s)	595
BbvI	GCAGC	1 cut(s)	473
BccI	CCATC	3 cut(s)	115, 155, 405
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	55
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	294
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
Bme1390I	CCNGG	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	55
BmrI	ACTGGG	1 cut(s)	373
BmsI	GCATC	4 cut(s)	238, 335, 521, 670
BmuI	ACTGGG	1 cut(s)	373
BpiI	GAAGAC	2 cut(s)	207, 558
Bsa29I	ATCGAT	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	577, 607
Bsc4I	CCNNNNNNNGG	4 cut(s)	380, 540, 603, 604
Bse1I	ACTGG	3 cut(s)	368, 436, 592
Bse3DI	GCAATG	3 cut(s)	555, 567, 703
BseBI	CCWGG	1 cut(s)	55
BseCI	ATCGAT	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	62
BseGI	GGATG	1 cut(s)	416
BseLI	CCNNNNNNNGG	4 cut(s)	380, 540, 603, 604
BseMI	GCAATG	3 cut(s)	555, 567, 703
BseNI	ACTGG	3 cut(s)	368, 436, 592
BseXI	GCAGC	1 cut(s)	473
BshVI	ATCGAT	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	595
BslI	CCNNNNNNNGG	4 cut(s)	380, 540, 603, 604
Bsp1286I	GDGCHC	1 cut(s)	595
Bsp143I	GATC	3 cut(s)	22, 370, 391
BspDI	ATCGAT	1 cut(s)	264
BspPI	GGATC	2 cut(s)	365, 399
BspQI	GCTCTTC	1 cut(s)	295
BsrDI	GCAATG	3 cut(s)	555, 567, 703
BsrI	ACTGG	3 cut(s)	368, 436, 592
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	3 cut(s)	22, 370, 391
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	3 cut(s)	206, 443, 548
Bst6I	CTCTTC	2 cut(s)	8, 295
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	2 cut(s)	456, 485
BstDSI	CCRYGG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	416
BstKTI	GATC	3 cut(s)	25, 373, 394
BstMBI	GATC	3 cut(s)	22, 370, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	473
BstV2I	GAAGAC	2 cut(s)	207, 558
Bsu15I	ATCGAT	1 cut(s)	264
BsuTUI	ATCGAT	1 cut(s)	264
BtgI	CCRYGG	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	416
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	510
CaiI	CAGNNNCTG	2 cut(s)	251, 546
ClaI	ATCGAT	1 cut(s)	264
Csp6I	GTAC	3 cut(s)	435, 449, 481
CviAII	CATG	1 cut(s)	9
CviJI	RGCY	3 cut(s)	67, 345, 464
CviKI_1	RGCY	3 cut(s)	67, 345, 464
CviQI	GTAC	3 cut(s)	435, 449, 481
DdeI	CTNAG	2 cut(s)	456, 485
DpnI	GATC	3 cut(s)	24, 372, 393
DpnII	GATC	3 cut(s)	22, 370, 391
DraI	TTTAAA	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	8, 295
EarI	CTCTTC	2 cut(s)	8, 295
Eco32I	GATATC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	53
EcoRV	GATATC	1 cut(s)	190
FaeI	CATG	1 cut(s)	12
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FatI	CATG	1 cut(s)	8
FauNDI	CATATG	1 cut(s)	387
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	1 cut(s)	423
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	1 cut(s)	462
Hin1II	CATG	1 cut(s)	12
HinfI	GANTC	4 cut(s)	71, 113, 489, 653
Hpy166II	GTNNAC	3 cut(s)	62, 95, 429
Hpy188I	TCNGA	3 cut(s)	112, 120, 331
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	3 cut(s)	62, 95, 429
HpyAV	CCTTC	1 cut(s)	475
HpyCH4III	ACNGT	3 cut(s)	206, 443, 548
HpyCH4V	TGCA	5 cut(s)	326, 361, 560, 661, 696
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	2 cut(s)	456, 485
Hsp92II	CATG	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	22, 370, 391
LguI	GCTCTTC	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	598
LpnPI	CCDG	8 cut(s)	40, 67, 246, 349, 417, 522, 526, 573
Lsp1109I	GCAGC	1 cut(s)	473
LweI	GCATC	4 cut(s)	238, 335, 521, 670
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	583
MalI	GATC	3 cut(s)	24, 372, 393
MboI	GATC	3 cut(s)	22, 370, 391
MboII	GAAGA	6 cut(s)	25, 212, 282, 460, 563, 656
MhlI	GDGCHC	1 cut(s)	595
MluCI	AATT	7 cut(s)	39, 126, 176, 182, 228, 299, 631
MlyI	GAGTC	1 cut(s)	662
MnlI	CCTC	2 cut(s)	114, 363
MseI	TTAA	3 cut(s)	174, 222, 609
MslI	CAYNNNNRTG	1 cut(s)	560
MspR9I	CCNGG	1 cut(s)	55
MvaI	CCWGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	3 cut(s)	22, 370, 391
NlaIII	CATG	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	583
PciSI	GCTCTTC	1 cut(s)	295
PfeI	GAWTC	3 cut(s)	71, 113, 489
PkrI	GCNGC	1 cut(s)	463
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
PsiI	TTATAA	1 cut(s)	530
Psp6I	CCWGG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	53
PstNI	CAGNNNCTG	2 cut(s)	251, 546
RsaI	GTAC	3 cut(s)	436, 450, 482
RsaNI	GTAC	3 cut(s)	435, 449, 481
RseI	CAYNNNNRTG	1 cut(s)	560
SapI	GCTCTTC	1 cut(s)	295
SaqAI	TTAA	3 cut(s)	174, 222, 609
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	3 cut(s)	22, 370, 391
SchI	GAGTC	1 cut(s)	662
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	595
SetI	ASST	3 cut(s)	59, 486, 616
SfaNI	GCATC	4 cut(s)	238, 335, 521, 670
SfcI	CTRYAG	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	560
Sse9I	AATT	7 cut(s)	39, 126, 176, 182, 228, 299, 631
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	3 cut(s)	206, 443, 548
TaqI	TCGA	3 cut(s)	74, 264, 309
TasI	AATT	7 cut(s)	39, 126, 176, 182, 228, 299, 631
TfiI	GAWTC	3 cut(s)	71, 113, 489
Tru1I	TTAA	3 cut(s)	174, 222, 609
Tru9I	TTAA	3 cut(s)	174, 222, 609
TscAI	CASTG	1 cut(s)	368
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	2 cut(s)	17, 516
TspRI	CASTG	1 cut(s)	368
XapI	RAATTY	4 cut(s)	126, 182, 228, 299
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.