Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0013433

Physical Location & Seq

Genomic Coordinates Forward (+)

61083078 .. 61086649

Gene Structure 3572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG336400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAACACATGGAAGAGATACGATCTTTTGAAGCAGTCTATTTCTCACTATTCCAGATGTCCTCGGCTTGATTCGATACATATTGTGTGGAGTGAGCCAAATCCTCCATCAGATTCTCTGAAAAAATTTCTAAACCACATTTTAGAGTTGAACACTAGAGATGGACGACAAGTTAAATTGAAATTCGATATCAATAAGGAAGACAGTTTGAACAACAGATTTAAAGAAATTCCAGATTTGGAAACGGATGCTGTCTTTTCTATTGATGATGATGTCATATTCCCTTGCTCTTCTGTAGAATTTGCTTTCGATGTTTGGCAAAGTGCATCAGATACTATGGTTGGCTTTGTGCCTCGTATGCACTGGGTTGATCCCACGAATGGTCATATGGATCATTACATATATGGTGGATGGTGGTCGGTTTGGTGGACTGGTACATACAGTATGGTACTCTCTAAGGCAGCCTTCTTCCACAAAAAGTACCTAAGAATCTACACAAATGAAATGCCAGCATCAATCAAAGACTTTATAACCAAGAACAGGTTTCTCATTTGTTGCTCAAGTTTTCTCATGGATCTTGTATTTTCAGTTGTGTCTGCAATTCTGCAAATGTACGTGTGTTTGTTTCAATGCACACAATTACTGAATCTTGGATTGAATTTCACCAGGAACTGTGAAGACATTGCAATGTCTTTTCTTGTAGCAAATGTGACTGGTGCTCCCCCTATATGGGTTAAAGGTAATCCTATATCCTATAATTTACATAGTTTTAAGTTTCATTCCTTGCATCTCCTTGTTTGCCTTTGTATTTTATGCCGTGCAATGAATGACAATTTTGGTCATTTGCCTTTGTCCATGATTCATCCTTACAATTTAGAGTGTTCAGAACTCATCATACTCATGTGGTCTTTGTGGGGCTGTGTTGATCATGACTCATCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008219 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010383 GO:0010393 GO:0010395 GO:0010400 GO:0010401 GO:0012505 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0030243 GO:0031410 GO:0031982 GO:0031984 GO:0032502 GO:0033993 GO:0035251 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0046527 GO:0048856 GO:0050896 GO:0051273 GO:0052541 GO:0052546 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:0097708 GO:0098791 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

314

Amino Acids

36.42

Weight (kDa)

6.21

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_64	PF09258	1 - 197	9.4e-53	Glycosyl transferase family 64 domain
Glyco_transf_64	PF09258	217 - 246	5.9e-07	Glycosyl transferase family 64 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55830
fragaria_vesca	FvH4_7g24130
malus_domestica	MD01G1148500.v1.1 MD07G1215500.v1.1
prunus_persica	Prupe.2G247400_v2.0.a1 Prupe.2G247400_v2.0.a1
pyrus_communis	pycom01g16710 pycom07g19780
rosa_chinensis	RchiOBHm_Chr1g0369551
rosa_laevigata	RLG00000027119
rosa_multiflora	Rmu_sc0001154.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287530
rosa_rugosa	Rorug01G0351100
rosa_samantha	Rh1AG359400 Rh1BG323100 Rh1CG336400 Rh1DG353900
rosa_wichuraiana	Rw1G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	530
AclWI	GGATC	3 cut(s)	365, 399, 582
AcsI	RAATTY	5 cut(s)	125, 182, 228, 299, 658
AfaI	GTAC	4 cut(s)	436, 450, 482, 614
AfiI	CCNNNNNNNGG	4 cut(s)	380, 540, 729, 730
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	6 cut(s)	31, 151, 181, 211, 629, 658
AjnI	CCWGG	1 cut(s)	665
Alw21I	GWGCWC	1 cut(s)	721
AlwI	GGATC	3 cut(s)	365, 399, 582
AlwNI	CAGNNNCTG	1 cut(s)	672
ApeKI	GCWGC	1 cut(s)	461
ApoI	RAATTY	5 cut(s)	125, 182, 228, 299, 658
AsuHPI	GGTGA	1 cut(s)	655
BaeI	ACNNNNGTAYC	2 cut(s)	324, 357
BbsI	GAAGAC	2 cut(s)	207, 684
Bbv12I	GWGCWC	1 cut(s)	721
BbvI	GCAGC	1 cut(s)	473
BccI	CCATC	3 cut(s)	115, 155, 405
BceAI	ACGGC	1 cut(s)	801
BciT130I	CCWGG	1 cut(s)	667
BclI	TGATCA	1 cut(s)	925
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	294
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
Bme1390I	CCNGG	1 cut(s)	667
BmrFI	CCNGG	1 cut(s)	667
BmrI	ACTGGG	1 cut(s)	373
BmsI	GCATC	4 cut(s)	238, 335, 521, 796
BmuI	ACTGGG	1 cut(s)	373
BpiI	GAAGAC	2 cut(s)	207, 684
BpuEI	CTTGAG	1 cut(s)	544
BsaAI	YACGTR	1 cut(s)	616
BsaJI	CCNNGG	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	703, 733
Bsc4I	CCNNNNNNNGG	4 cut(s)	380, 540, 729, 730
Bse1I	ACTGG	3 cut(s)	368, 436, 718
Bse3DI	GCAATG	3 cut(s)	681, 693, 828
BseBI	CCWGG	1 cut(s)	667
BseDI	CCNNGG	1 cut(s)	62
BseGI	GGATG	3 cut(s)	253, 416, 862
BseLI	CCNNNNNNNGG	4 cut(s)	380, 540, 729, 730
BseMI	GCAATG	3 cut(s)	681, 693, 828
BseNI	ACTGG	3 cut(s)	368, 436, 718
BseXI	GCAGC	1 cut(s)	473
BsiHKAI	GWGCWC	1 cut(s)	721
BslI	CCNNNNNNNGG	4 cut(s)	380, 540, 729, 730
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp143I	GATC	5 cut(s)	22, 370, 391, 574, 925
BspHI	TCATGA	1 cut(s)	928
BspPI	GGATC	3 cut(s)	365, 399, 582
BspQI	GCTCTTC	1 cut(s)	295
BsrDI	GCAATG	3 cut(s)	681, 693, 828
BsrI	ACTGG	3 cut(s)	368, 436, 718
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	5 cut(s)	22, 370, 391, 574, 925
Bst2UI	CCWGG	1 cut(s)	667
Bst4CI	ACNGT	3 cut(s)	206, 443, 674
Bst6I	CTCTTC	2 cut(s)	8, 295
BstBAI	YACGTR	1 cut(s)	616
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	2 cut(s)	456, 485
BstF5I	GGATG	3 cut(s)	253, 416, 862
BstKTI	GATC	5 cut(s)	25, 373, 394, 577, 928
BstMBI	GATC	5 cut(s)	22, 370, 391, 574, 925
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNI	CCWGG	1 cut(s)	667
BstSCI	CCNGG	1 cut(s)	665
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	473
BstV2I	GAAGAC	2 cut(s)	207, 684
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BtsCI	GGATG	3 cut(s)	253, 416, 862
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	510
CaiI	CAGNNNCTG	1 cut(s)	672
CciI	TCATGA	1 cut(s)	928
Csp6I	GTAC	4 cut(s)	435, 449, 481, 613
CviAII	CATG	5 cut(s)	9, 571, 856, 901, 929
CviJI	RGCY	5 cut(s)	67, 97, 345, 464, 918
CviKI_1	RGCY	5 cut(s)	67, 97, 345, 464, 918
CviQI	GTAC	4 cut(s)	435, 449, 481, 613
DdeI	CTNAG	2 cut(s)	456, 485
DpnI	GATC	5 cut(s)	24, 372, 393, 576, 927
DpnII	GATC	5 cut(s)	22, 370, 391, 574, 925
DraI	TTTAAA	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	8, 295
EarI	CTCTTC	2 cut(s)	8, 295
Eco32I	GATATC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	665
EcoRV	GATATC	1 cut(s)	190
FaeI	CATG	5 cut(s)	12, 574, 859, 904, 932
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FatI	CATG	5 cut(s)	8, 570, 855, 900, 928
FauNDI	CATATG	1 cut(s)	387
FbaI	TGATCA	1 cut(s)	925
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	3 cut(s)	260, 423, 849
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	1 cut(s)	462
Hin1II	CATG	5 cut(s)	12, 574, 859, 904, 932
HinfI	GANTC	6 cut(s)	71, 113, 489, 646, 859, 932
HphI	GGTGA	1 cut(s)	655
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	4 cut(s)	112, 120, 331, 886
Hpy188III	TCNNGA	3 cut(s)	54, 233, 929
Hpy8I	GTNNAC	1 cut(s)	429
HpyAV	CCTTC	1 cut(s)	475
HpyCH4III	ACNGT	3 cut(s)	206, 443, 674
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	8 cut(s)	326, 361, 599, 607, 633, 686, 787, 821
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	2 cut(s)	456, 485
HpySE526I	ACGT	1 cut(s)	615
Hsp92II	CATG	5 cut(s)	12, 574, 859, 904, 932
Ksp22I	TGATCA	1 cut(s)	925
Kzo9I	GATC	5 cut(s)	22, 370, 391, 574, 925
LguI	GCTCTTC	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	724
LpnPI	CCDG	9 cut(s)	67, 246, 349, 417, 522, 526, 652, 679, 699
Lsp1109I	GCAGC	1 cut(s)	473
LweI	GCATC	4 cut(s)	238, 335, 521, 796
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	1 cut(s)	709
MalI	GATC	5 cut(s)	24, 372, 393, 576, 927
MboI	GATC	5 cut(s)	22, 370, 391, 574, 925
MboII	GAAGA	5 cut(s)	25, 212, 282, 460, 689
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	721
MlyI	GAGTC	1 cut(s)	926
MnlI	CCTC	3 cut(s)	72, 114, 363
MseI	TTAA	4 cut(s)	174, 222, 735, 771
MslI	CAYNNNNRTG	2 cut(s)	686, 899
MspR9I	CCNGG	1 cut(s)	667
MvaI	CCWGG	1 cut(s)	667
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	5 cut(s)	22, 370, 391, 574, 925
NlaIII	CATG	5 cut(s)	12, 574, 859, 904, 932
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	709
PagI	TCATGA	1 cut(s)	928
PciSI	GCTCTTC	1 cut(s)	295
PfeI	GAWTC	5 cut(s)	71, 113, 489, 646, 859
PkrI	GCNGC	1 cut(s)	463
PleI	GAGTC	1 cut(s)	926
PpsI	GAGTC	1 cut(s)	926
Ppu21I	YACGTR	1 cut(s)	616
PsiI	TTATAA	1 cut(s)	530
Psp6I	CCWGG	1 cut(s)	665
PspGI	CCWGG	1 cut(s)	665
PsrI	GAACNNNNNNTAC	2 cut(s)	879, 911
PstNI	CAGNNNCTG	1 cut(s)	672
PsuI	RGATCY	1 cut(s)	574
RsaI	GTAC	4 cut(s)	436, 450, 482, 614
RsaNI	GTAC	4 cut(s)	435, 449, 481, 613
RseI	CAYNNNNRTG	2 cut(s)	686, 899
SapI	GCTCTTC	1 cut(s)	295
SaqAI	TTAA	4 cut(s)	174, 222, 735, 771
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	5 cut(s)	22, 370, 391, 574, 925
SchI	GAGTC	1 cut(s)	926
ScrFI	CCNGG	1 cut(s)	667
SduI	GDGCHC	1 cut(s)	721
SetI	ASST	4 cut(s)	486, 545, 618, 742
SfaNI	GCATC	4 cut(s)	238, 335, 521, 796
SfcI	CTRYAG	1 cut(s)	294
SmiMI	CAYNNNNRTG	2 cut(s)	686, 899
SmlI	CTYRAG	1 cut(s)	559
SmoI	CTYRAG	1 cut(s)	559
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	665
TaaI	ACNGT	3 cut(s)	206, 443, 674
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	3 cut(s)	74, 186, 309
TfiI	GAWTC	5 cut(s)	71, 113, 489, 646, 859
Tru1I	TTAA	4 cut(s)	174, 222, 735, 771
Tru9I	TTAA	4 cut(s)	174, 222, 735, 771
TscAI	CASTG	1 cut(s)	368
TseFI	GTSAC	1 cut(s)	709
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	1 cut(s)	709
TspDTI	ATGAA	5 cut(s)	17, 516, 767, 839, 851
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	368
XapI	RAATTY	5 cut(s)	125, 182, 228, 299, 658
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.