Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0013433

Physical Location & Seq

Genomic Coordinates Reverse (-)

8549726 .. 8553011

Gene Structure 3286 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00287530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAGGGGGAGCTTGATGAACCGGCGAGGGGTTCAGAGGTTCCGGCAGGCGCTGATCTCGACCGTCGGATCGGTGAAGATTAAGCTCGTGCTCGGATTCTGCATCGGCTTTACTCTCATCGCTCTCGCCGGCCGCGCTTCGGAGTTTATGGGATGGACGAGTCACACTGCTTCGCTGGAACGGTTCTCCGGTTCGAGGAAAGGATATGCTATTGTAATGAACACATGGAAGAGATACGATCTTTTGAAGCAGTCAATTTCTCACTATTCCAGGTGTCCACGGCTTGATTCGATACATATTGTGTGGAGTGAGCCAAATCCTCCATCAGATTCTCTGAAAAAATTTCTAAACCACATTATAGAGTTGAACACTAGAGATGGACGACAAGTTAAATTGAAATTTGATATCAATAAGGAAGACAGTTTGAACAACAGATTTAAAGAAATTCCAGATTTGGAAACGGATGCTGTCTTTTCTGTTGACGATGATGTCATATTCCCTTGCTCTTCTGTAGAATTTGCTTTCGATGTTTGGCAAAGTGCATCAGATACTATGGTTGGCTTTGTGCCTCGTATGCACTGGGTTGATCCCACGAATGGTCGTATGGATCATTACATATATGGTGGATGGTGGTCGGTTTGGTGGACTGGTACATACAGTATGGTACTCTCTAAGGCAGCCTTCTTCCACAAAAAGTACCTAAGAATCTACACAAATGAAATGCCAGCATCAATCAAAGACTTTATAACCAAGAACAGGAACTGTGAAGACATTGCAATGTCTTTTCTTGTAGCAAATGTGACTGGTGCTCCCCCTATATGGGTTAAAGGTAAGATATTTGAGATTGGATCAACCGGAATCAGTAGCATGGGAGGCCATACTGAAAAAAGAACCCACTGCGTTGATAGATTTACTGCTGAGTTTGGGCGAATGCCATTGGTACCGACTTCTGTGAAAGCTGTCGACAGTCGCAACATCTGGTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008219 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010383 GO:0010393 GO:0010395 GO:0010400 GO:0010401 GO:0012505 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0030243 GO:0031410 GO:0031982 GO:0031984 GO:0032502 GO:0033993 GO:0035251 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0046527 GO:0048856 GO:0050896 GO:0051273 GO:0052541 GO:0052546 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:0097708 GO:0098791 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

329

Amino Acids

37.67

Weight (kDa)

9.38

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_64	PF09258	69 - 322	1.7e-78	Glycosyl transferase family 64 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55830
fragaria_vesca	FvH4_7g24130
malus_domestica	MD01G1148500.v1.1 MD07G1215500.v1.1
prunus_persica	Prupe.2G247400_v2.0.a1 Prupe.2G247400_v2.0.a1
pyrus_communis	pycom01g16710 pycom07g19780
rosa_chinensis	RchiOBHm_Chr1g0369551
rosa_laevigata	RLG00000027119
rosa_multiflora	Rmu_sc0001154.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287530
rosa_rugosa	Rorug01G0351100
rosa_samantha	Rh1AG359400 Rh1BG323100 Rh1CG336400 Rh1DG353900
rosa_wichuraiana	Rw1G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	746
AasI	GACNNNNNNGTC	1 cut(s)	488
Acc65I	GGTACC	1 cut(s)	940
AccB1I	GGYRCC	1 cut(s)	940
AccI	GTMKAC	1 cut(s)	963
AccII	CGCG	1 cut(s)	135
AciI	CCGC	1 cut(s)	133
AclWI	GGATC	4 cut(s)	76, 581, 615, 856
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	4 cut(s)	341, 398, 444, 515
AfaI	GTAC	4 cut(s)	652, 666, 698, 942
AfiI	CCNNNNNNNGG	7 cut(s)	28, 139, 195, 596, 756, 819, 820
AgsI	TTSAA	4 cut(s)	247, 367, 397, 427
AjnI	CCWGG	1 cut(s)	269
AluBI	AGCT	3 cut(s)	12, 85, 959
AluI	AGCT	3 cut(s)	12, 85, 959
Alw21I	GWGCWC	2 cut(s)	93, 811
AlwI	GGATC	4 cut(s)	76, 581, 615, 856
AlwNI	CAGNNNCTG	2 cut(s)	52, 762
AoxI	GGCC	2 cut(s)	130, 874
ApeKI	GCWGC	1 cut(s)	677
ApoI	RAATTY	4 cut(s)	341, 398, 444, 515
Asp718I	GGTACC	1 cut(s)	940
AspLEI	GCGC	2 cut(s)	52, 137
AsuHPI	GGTGA	1 cut(s)	85
BaeI	ACNNNNGTAYC	2 cut(s)	540, 573
BanI	GGYRCC	1 cut(s)	940
BauI	CACGAG	1 cut(s)	86
BbsI	GAAGAC	2 cut(s)	423, 774
Bbv12I	GWGCWC	2 cut(s)	93, 811
BbvI	GCAGC	1 cut(s)	689
BccI	CCATC	4 cut(s)	147, 331, 371, 621
BceAI	ACGGC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	271
BfaI	CTAG	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	510
BfoI	RGCGCY	1 cut(s)	53
BisI	GCNGC	2 cut(s)	133, 678
BlsI	GCNGC	2 cut(s)	134, 679
Bme1390I	CCNGG	1 cut(s)	271
BmiI	GGNNCC	2 cut(s)	41, 942
BmrFI	CCNGG	1 cut(s)	271
BmrI	ACTGGG	1 cut(s)	589
BmsI	GCATC	4 cut(s)	111, 454, 551, 737
BmuI	ACTGGG	1 cut(s)	589
BpiI	GAAGAC	2 cut(s)	423, 774
BsaJI	CCNNGG	1 cut(s)	278
BsaWI	WCCGGW	2 cut(s)	188, 854
BsaXI	ACNNNNNCTCC	2 cut(s)	793, 823
Bsc4I	CCNNNNNNNGG	7 cut(s)	28, 139, 195, 596, 756, 819, 820
Bse118I	RCCGGY	2 cut(s)	21, 128
Bse1I	ACTGG	3 cut(s)	584, 652, 808
Bse3DI	GCAATG	2 cut(s)	771, 783
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	3 cut(s)	158, 469, 632
BseLI	CCNNNNNNNGG	7 cut(s)	28, 139, 195, 596, 756, 819, 820
BseMI	GCAATG	2 cut(s)	771, 783
BseMII	CTCAG	1 cut(s)	909
BseNI	ACTGG	3 cut(s)	584, 652, 808
BseX3I	CGGCCG	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	689
Bsh1236I	CGCG	1 cut(s)	135
Bsh1285I	CGRYCG	2 cut(s)	63, 133
BshFI	GGCC	2 cut(s)	132, 876
BshNI	GGYRCC	1 cut(s)	940
BsiEI	CGRYCG	2 cut(s)	63, 133
BsiHKAI	GWGCWC	2 cut(s)	93, 811
BsiSI	CCGG	5 cut(s)	22, 43, 129, 189, 855
BslI	CCNNNNNNNGG	7 cut(s)	28, 139, 195, 596, 756, 819, 820
BsmI	GAATGC	1 cut(s)	936
BsnI	GGCC	2 cut(s)	132, 876
Bsp1286I	GDGCHC	2 cut(s)	93, 811
Bsp143I	GATC	6 cut(s)	54, 68, 238, 586, 607, 848
BspACI	CCGC	1 cut(s)	133
BspANI	GGCC	2 cut(s)	132, 876
BspCNI	CTCAG	1 cut(s)	910
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	41, 942
BspPI	GGATC	4 cut(s)	76, 581, 615, 856
BspQI	GCTCTTC	1 cut(s)	511
BspT107I	GGYRCC	1 cut(s)	940
BsrDI	GCAATG	2 cut(s)	771, 783
BsrFI	RCCGGY	2 cut(s)	21, 128
BsrI	ACTGG	3 cut(s)	584, 652, 808
BssAI	RCCGGY	2 cut(s)	21, 128
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	6 cut(s)	54, 68, 238, 586, 607, 848
BssSI	CACGAG	1 cut(s)	86
Bst2BI	CACGAG	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	6 cut(s)	64, 183, 422, 659, 764, 968
Bst6I	CTCTTC	2 cut(s)	224, 511
BstC8I	GCNNGC	3 cut(s)	48, 130, 726
BstDEI	CTNAG	3 cut(s)	672, 701, 918
BstDSI	CCRYGG	1 cut(s)	278
BstF5I	GGATG	3 cut(s)	158, 469, 632
BstFNI	CGCG	1 cut(s)	135
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	2 cut(s)	52, 137
BstKTI	GATC	6 cut(s)	57, 71, 241, 589, 610, 851
BstMBI	GATC	6 cut(s)	54, 68, 238, 586, 607, 848
BstMCI	CGRYCG	2 cut(s)	63, 133
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 574, 873
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	269
BstSFI	CTRYAG	1 cut(s)	510
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	689
BstV2I	GAAGAC	2 cut(s)	423, 774
BstZI	CGGCCG	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	132, 876
BtgI	CCRYGG	1 cut(s)	278
BtgZI	GCGATG	1 cut(s)	103
BtsCI	GGATG	3 cut(s)	158, 469, 632
BtsI	GCAGTG	2 cut(s)	165, 895
BtsIMutI	CAGTG	3 cut(s)	165, 577, 895
Cac8I	GCNNGC	3 cut(s)	48, 130, 726
CaiI	CAGNNNCTG	2 cut(s)	52, 762
CfoI	GCGC	2 cut(s)	52, 137
Cfr10I	RCCGGY	2 cut(s)	21, 128
Csp6I	GTAC	4 cut(s)	651, 665, 697, 941
CviAII	CATG	2 cut(s)	225, 868
CviQI	GTAC	4 cut(s)	651, 665, 697, 941
DdeI	CTNAG	3 cut(s)	672, 701, 918
DpnI	GATC	6 cut(s)	56, 70, 240, 588, 609, 850
DpnII	GATC	6 cut(s)	54, 68, 238, 586, 607, 848
DraI	TTTAAA	1 cut(s)	439
DrdI	GACNNNNNNGTC	1 cut(s)	488
DseDI	GACNNNNNNGTC	1 cut(s)	488
EaeI	YGGCCR	1 cut(s)	130
EagI	CGGCCG	1 cut(s)	130
Eam1104I	CTCTTC	2 cut(s)	224, 511
EarI	CTCTTC	2 cut(s)	224, 511
EclXI	CGGCCG	1 cut(s)	130
Eco32I	GATATC	1 cut(s)	406
Eco52I	CGGCCG	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	269
EcoRV	GATATC	1 cut(s)	406
FaeI	CATG	2 cut(s)	228, 871
FalI	AAGNNNNNCTT	2 cut(s)	665, 697
FatI	CATG	2 cut(s)	224, 867
FblI	GTMKAC	1 cut(s)	963
Fnu4HI	GCNGC	2 cut(s)	133, 678
FokI	GGATG	3 cut(s)	165, 476, 639
Fsp4HI	GCNGC	2 cut(s)	133, 678
FspBI	CTAG	1 cut(s)	372
GlaI	GCGC	2 cut(s)	51, 136
GluI	GCNGC	2 cut(s)	133, 678
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	2 cut(s)	132, 876
HapII	CCGG	5 cut(s)	22, 43, 129, 189, 855
HhaI	GCGC	2 cut(s)	52, 137
Hin1II	CATG	2 cut(s)	228, 871
Hin6I	GCGC	2 cut(s)	50, 135
HinP1I	GCGC	2 cut(s)	50, 135
HincII	GTYRAC	2 cut(s)	481, 964
HindII	GTYRAC	2 cut(s)	481, 964
HinfI	GANTC	6 cut(s)	96, 160, 287, 329, 705, 858
HpaII	CCGG	5 cut(s)	22, 43, 129, 189, 855
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	4 cut(s)	278, 481, 645, 964
Hpy188I	TCNGA	7 cut(s)	36, 68, 95, 142, 328, 336, 547
Hpy188III	TCNNGA	2 cut(s)	58, 449
Hpy8I	GTNNAC	4 cut(s)	278, 481, 645, 964
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	691
HpyCH4III	ACNGT	6 cut(s)	64, 183, 422, 659, 764, 968
HpyCH4V	TGCA	4 cut(s)	102, 542, 577, 776
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 574, 873
HpyF3I	CTNAG	3 cut(s)	672, 701, 918
Hsp92II	CATG	2 cut(s)	228, 871
HspAI	GCGC	2 cut(s)	50, 135
KpnI	GGTACC	1 cut(s)	944
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
Kzo9I	GATC	6 cut(s)	54, 68, 238, 586, 607, 848
LguI	GCTCTTC	1 cut(s)	511
LmnI	GCTCC	2 cut(s)	9, 814
Lsp1109I	GCAGC	1 cut(s)	689
LweI	GCATC	4 cut(s)	111, 454, 551, 737
MaeI	CTAG	1 cut(s)	372
MaeIII	GTNAC	2 cut(s)	161, 799
MalI	GATC	6 cut(s)	56, 70, 240, 588, 609, 850
MboI	GATC	6 cut(s)	54, 68, 238, 586, 607, 848
MboII	GAAGA	6 cut(s)	88, 241, 428, 498, 676, 779
MhlI	GDGCHC	2 cut(s)	93, 811
MluCI	AATT	6 cut(s)	255, 341, 392, 398, 444, 515
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	6 cut(s)	20, 30, 189, 330, 579, 866
MroNI	GCCGGC	1 cut(s)	128
MseI	TTAA	4 cut(s)	81, 390, 438, 825
MslI	CAYNNNNRTG	1 cut(s)	776
MspI	CCGG	5 cut(s)	22, 43, 129, 189, 855
MspR9I	CCNGG	1 cut(s)	271
Mva1269I	GAATGC	1 cut(s)	936
MvaI	CCWGG	1 cut(s)	271
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	3 cut(s)	134, 574, 873
NaeI	GCCGGC	1 cut(s)	130
NdeII	GATC	6 cut(s)	54, 68, 238, 586, 607, 848
NgoMIV	GCCGGC	1 cut(s)	128
NlaIII	CATG	2 cut(s)	228, 871
NlaIV	GGNNCC	2 cut(s)	41, 942
NmuCI	GTSAC	2 cut(s)	161, 799
PciSI	GCTCTTC	1 cut(s)	511
PctI	GAATGC	1 cut(s)	936
PdiI	GCCGGC	1 cut(s)	130
PfeI	GAWTC	5 cut(s)	96, 287, 329, 705, 858
PkrI	GCNGC	2 cut(s)	134, 679
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
PsiI	TTATAA	1 cut(s)	746
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	2 cut(s)	41, 942
PstNI	CAGNNNCTG	2 cut(s)	52, 762
RsaI	GTAC	4 cut(s)	652, 666, 698, 942
RsaNI	GTAC	4 cut(s)	651, 665, 697, 941
RseI	CAYNNNNRTG	1 cut(s)	776
SalI	GTCGAC	1 cut(s)	962
SapI	GCTCTTC	1 cut(s)	511
SaqAI	TTAA	4 cut(s)	81, 390, 438, 825
SatI	GCNGC	2 cut(s)	133, 678
Sau3AI	GATC	6 cut(s)	54, 68, 238, 586, 607, 848
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	271
SduI	GDGCHC	2 cut(s)	93, 811
SetI	ASST	7 cut(s)	14, 41, 87, 275, 702, 832, 961
SfaNI	GCATC	4 cut(s)	111, 454, 551, 737
SfcI	CTRYAG	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	776
Sse9I	AATT	6 cut(s)	255, 341, 392, 398, 444, 515
SsiI	CCGC	1 cut(s)	133
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	269
TaaI	ACNGT	6 cut(s)	64, 183, 422, 659, 764, 968
TaqI	TCGA	5 cut(s)	59, 194, 290, 525, 963
TasI	AATT	6 cut(s)	255, 341, 392, 398, 444, 515
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	5 cut(s)	96, 287, 329, 705, 858
Tru1I	TTAA	4 cut(s)	81, 390, 438, 825
Tru9I	TTAA	4 cut(s)	81, 390, 438, 825
TscAI	CASTG	3 cut(s)	172, 584, 902
TseFI	GTSAC	2 cut(s)	161, 799
TseI	GCWGC	1 cut(s)	677
Tsp45I	GTSAC	2 cut(s)	161, 799
TspDTI	ATGAA	3 cut(s)	32, 233, 732
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	3 cut(s)	172, 584, 902
XapI	RAATTY	4 cut(s)	341, 398, 444, 515
XmiI	GTMKAC	1 cut(s)	963
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.