Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005831

Physical Location & Seq

Genomic Coordinates Reverse (-)

20792477 .. 20797670

Gene Structure 5194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2652 bp

ATGGCTAATCCTCAAGCTTCTCCAATTCTCCATCACCCCCAAAATCACCTCTCTCTCTTCCACTTTCGCACTACAACATCTCCTCGCTCCTTCAGCTCTCTGCATTTCAGAAAACCACTCCTCTTTCTCTCTTCTTCTTCGTCATTTTCCTCGAAATTACAGCAGAGCGAGCAGCAATGTAATAATCACCAGGTGAGACACGTGTCCACCGTACCTGTCGAGTATTCTACACCGACTCCTCCGGAATCCGACGATTTCTTATCGGAAATCGATCGGCTTAAGTCTCTCCTATCGAAACTAGACGTTTCCAAGGATTTACGAAGGAAGGACGCGGTTATCGACGCTGATTCCAGAGTTCGTCGATTCTTCAGCGAGAATCGAGGCGGTTTATCTAAGGTTTTTGGTTATCTTGGTTTGAATTCGAATGAGATGTTTCTCGTTAAGTGTGTTATCGCGGCGGGGCAAGAACACGCTCTATGTATGAATTATGAGGAAGCATTTGGAGAAGAAGAGGAGGAGTATACAGTGAGAAGCTCAGTGAAGAACGCACTTTACGCATTGGTGGAGATGATTGAGAGATTCGATGTGAATAGTAGCGGCTATAAAGGTAGAAGAGAGATGGGTACAGTTTTAGATTCAGAGGAGATTGCTCATTTTAGAAAATTCTTGACGTTTCTGGAAGAAATTGAACAGTTCTACGACTGCATTGGAGGAATCATTGGATATCAGGTTATGGTTCTTGAGCTTCTTCATCAGTCATCTAAGAGACGTAATACTAACCGGTCACAACTTGTTGAAGAATCATTGGGTTGCCAGTATTTAGAAATGCATACTCCTAGTGTTCTTGATCTCACTCAGGAGGAAGATTATGCTTCACAGGCGGCTCTGTGGGGAATTGAGGGATTGCCAGACCTAGGTGAAATATATCCCCTAGGAGGTGCTGCAGACAGACTAGGTTTGATTGATTCAGAAACTGGAGAATGCCTTCCTGCAGCAATGCTTGCTCATTGTGGACGAACTTTGTTGGAGGGACTTATTAGAGATCTTCAGGCTAGAGAGTTCCTTTACTTCAAACTTTATGGAAAGCAATGTGTCACACCTGTTGCCATTATGACAAGTGCTGCAAAGAACAACCATGAGCATGTAAGTTCGCTTTGTGAAAGGCTTAAATGGTTTGGCAGAGGTCAATCAAATTTCCGACTCTTTGAACAGCCTCTCGTCCCAGCTGTCAGTGCTGAAGATGGTCAATGGATAGTATCAAAGCCCTTTGTTCCAGTTAGTAAACCTGGTGGTCATGGTGTAATTTGGAAATTGGCTTATGACAAAGGTGTCTTTAACTGGTTTTACGATCATGGAAGAAAAGGAGCAACCGTTCGGCAAGTTAGTAACGTTGTGGCTGCTACAGATGTTACCCTCTTGGCCCTTGCTGGGATTGGCTTACGGTATAATAAGAAACTTGGGTTTGCATCCTGTAAAAGGAATGCTGGAGCAACCGAAGGGATTAATGTTTTGATGGAGAAGAAGAATTTCGATGGGAAGTGGGAATATGGTATATCGTGCATTGAGTACACAGAATTTGATAAATTCGATATCTCCAACAGATCACCTTCTTCAAATGGTTTGCAGGCTGATTTTCCTGCCAATACAAACATTCTATATGTAGACTTACATTCGGCCGAGTTAATTGGGTCAAGCAGTAATGCAAAAAGTTTGCCAAATATGGTTCTCAATACAAAGAAGCGAATTGAGTACCTTGATCAGTATGGAGACTATCACAGCGTTATGGGTGGTAGATTGGAATGCACGATGCAAAACATAGCAGACAACTTTTTTAATAAGTTTCCATCTAGATGCCACGGCAGTCTAGAAGACAAACTGGATACATATATTGTGTACAACGAACGAAGAAAGGTCACTTCATCAGCTAAGAAGAAGAAACCACACGCAAGTGCTGCATTACACCAGACTCCAGATGGTGCATTGTTGGATATACTCCGGAATGGATATGACCTCCTTACGGAGTGTGATATCAAACTCCCCATGATTGAAGCTAATGATAAATATGTTGATTCCCCACCTCCGTATCTCATTCTTCTGCATCCTGCCCTCGGCCCTCTTTGGGAAGTTTCGAGACAGAAATTCAAGGGAGGGTCCATTTCCAGTTGCTCAGAACTGCAACTAGAGATTGCAGAGTTCTCATGGAACAATGTTCAGGTTGATGGTAGCTTGATCGTTACTGCTGAAAATGCCATGGGTTCAACAACACCTAATGATAATGGTGAACCAATATTGCAATACGGGTTAAGGTGTGGTAAGTGTAAACTGCATAACGTGAACGTAGTGAACCGAGGAATCGATTGGAACAGTAAATCAAATGTTTACTGGAGAAACGATGTGAACAGGCTTGAGACCTGTAAAATCATACTGCACGGAAATGCAGAATTCGAAGCCAGCAATGTAACTATAGAGGGACACCATGTTTTTGAAGTACCCGACGGTCACAAACTGAAGATCACATCAGGAAATGCAGGTTTAAGCATCAACTTGGAAGCACTGAAAGAAGAGGTAATGGAAACAGGAAGCTGGTATTGGAACTACCAACTCAATGGATCCCATATTCATCTTCAACAAGTAGAGGTTTCACAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006629 GO:0006725 GO:0006790 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009225 GO:0009226 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046505 GO:0046506 GO:0051748 GO:0055086 GO:0070569 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGP

Protein Analysis

883

Amino Acids

99.04

Weight (kDa)

5.97

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hexapep_UGP3_C	PF25441	714 - 877	1.9e-73	UGP3-like, C-terminal hexapeptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56040
fragaria_vesca	FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830
malus_domestica	MD01G1156200.v1.1 MD01G1156300.v1.1 MD07G1224900.v1.1
prunus_persica	Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1
pyrus_communis	pycom07g20360
rosa_chinensis	RchiOBHm_Chr1g0370701
rosa_laevigata	RLG00000027016
rosa_multiflora	Rmu_sc0004550.1_g000012
rosa_roxburghii	Rroxscaffold_4G00286290
rosa_rugosa	Rorug01G0358600
rosa_samantha	Rh1AG368300 Rh1BG331700 Rh1CG345700 Rh1DG363100
rosa_wichuraiana	Rw1G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1328
Acc36I	ACCTGC	1 cut(s)	2519
AccI	GTMKAC	2 cut(s)	521, 1662
AccII	CGCG	2 cut(s)	332, 455
AccIII	TCCGGA	2 cut(s)	241, 1995
AciI	CCGC	6 cut(s)	332, 384, 455, 458, 597, 881
AclI	AACGTT	1 cut(s)	1389
AclWI	GGATC	2 cut(s)	2604, 2617
AcoI	YGGCCR	1 cut(s)	1674
AcsI	RAATTY	8 cut(s)	418, 662, 1192, 1525, 1574, 1583, 2138, 2441
AcuI	CTGAAG	5 cut(s)	76, 352, 1031, 1257, 2528
AcvI	CACGTG	1 cut(s)	202
AdeI	CACNNNGTG	1 cut(s)	193
AfaI	GTAC	6 cut(s)	213, 625, 1568, 1751, 1895, 2490
AfiI	CCNNNNNNNGG	7 cut(s)	914, 935, 1428, 1476, 2017, 2108, 2119
AflII	CTTAAG	1 cut(s)	278
AflIII	ACRYGT	2 cut(s)	199, 201
AgeI	ACCGGT	1 cut(s)	780
AjnI	CCWGG	2 cut(s)	189, 1285
AjuI	GAANNNNNNNTTGG	2 cut(s)	2572, 2604
AleI	CACNNNNGTG	1 cut(s)	1947
AloI	GAACNNNNNNTCC	2 cut(s)	1356, 1388
Alw26I	GTCTC	6 cut(s)	190, 288, 760, 1761, 2125, 2402
AlwI	GGATC	2 cut(s)	2604, 2617
AlwNI	CAGNNNCTG	1 cut(s)	974
Aor13HI	TCCGGA	2 cut(s)	241, 1995
AoxI	GGCC	3 cut(s)	1419, 1674, 2110
ApeKI	GCWGC	6 cut(s)	172, 941, 992, 1121, 1397, 1952
ApoI	RAATTY	8 cut(s)	418, 662, 1192, 1525, 1574, 1583, 2138, 2441
AseI	ATTAAT	1 cut(s)	1503
AsiGI	ACCGGT	1 cut(s)	780
Asp700I	GAANNNNTTC	2 cut(s)	984, 1526
AspA2I	CCTAGG	2 cut(s)	913, 931
AspS9I	GGNCC	3 cut(s)	1420, 2111, 2151
AsuHPI	GGTGA	7 cut(s)	26, 38, 179, 205, 929, 1596, 2291
AsuII	TTCGAA	2 cut(s)	422, 2445
AvaII	GGWCC	1 cut(s)	2151
AvrII	CCTAGG	2 cut(s)	913, 931
BaeI	ACNNNNGTAYC	2 cut(s)	2066, 2099
BamHI	GGATCC	1 cut(s)	2609
BbrPI	CACGTG	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	1875
BbvI	GCAGC	6 cut(s)	184, 928, 1004, 1108, 1384, 1939
BccI	CCATC	8 cut(s)	39, 613, 1235, 1507, 1526, 1852, 1967, 2213
BceAI	ACGGC	1 cut(s)	1873
BciT130I	CCWGG	2 cut(s)	191, 1287
BciVI	GTATCC	1 cut(s)	1873
BclI	TGATCA	1 cut(s)	1756
BcoDI	GTCTC	6 cut(s)	190, 288, 760, 1761, 2125, 2402
BfaI	CTAG	9 cut(s)	299, 837, 914, 932, 953, 1053, 1848, 1865, 2180
BfmI	CTRYAG	4 cut(s)	942, 990, 1401, 2463
BfrI	CTTAAG	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	2519
BfuI	GTATCC	1 cut(s)	1873
BglII	AGATCT	1 cut(s)	1042
BisI	GCNGC	9 cut(s)	173, 456, 598, 882, 942, 993, 1122, 1398, 1953
BlnI	CCTAGG	2 cut(s)	913, 931
BlsI	GCNGC	9 cut(s)	174, 457, 599, 883, 943, 994, 1123, 1399, 1954
Bme1390I	CCNGG	2 cut(s)	191, 1287
Bme18I	GGWCC	1 cut(s)	2151
BmgT120I	GGNCC	3 cut(s)	1420, 2111, 2151
BmiI	GGNNCC	2 cut(s)	2152, 2611
BmrFI	CCNGG	2 cut(s)	191, 1287
BmsI	GCATC	5 cut(s)	1475, 1797, 1841, 2107, 2547
BoxI	GACNNNNGTC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	1875
BpmI	CTGGAG	4 cut(s)	996, 1506, 1953, 2404
Bpu14I	TTCGAA	2 cut(s)	422, 2445
BpuEI	CTTGAG	2 cut(s)	761, 2426
Bsa29I	ATCGAT	2 cut(s)	270, 2355
BsaAI	YACGTR	1 cut(s)	202
BsaI	GGTCTC	1 cut(s)	2402
BsaJI	CCNNGG	7 cut(s)	309, 913, 931, 1855, 2107, 2250, 2347
BsaWI	WCCGGW	3 cut(s)	241, 780, 1995
BsaXI	ACNNNNNCTCC	6 cut(s)	64, 94, 220, 250, 1356, 1386
Bsc4I	CCNNNNNNNGG	7 cut(s)	914, 935, 1428, 1476, 2017, 2108, 2119
Bse118I	RCCGGY	1 cut(s)	780
Bse1I	ACTGG	7 cut(s)	814, 979, 1274, 1343, 1881, 2160, 2387
Bse3DI	GCAATG	4 cut(s)	182, 1002, 1094, 2461
BseAI	TCCGGA	2 cut(s)	241, 1995
BseBI	CCWGG	2 cut(s)	191, 1287
BseCI	ATCGAT	2 cut(s)	270, 2355
BseDI	CCNNGG	7 cut(s)	309, 913, 931, 1855, 2107, 2250, 2347
BseGI	GGATG	2 cut(s)	1466, 2098
BseLI	CCNNNNNNNGG	7 cut(s)	914, 935, 1428, 1476, 2017, 2108, 2119
BseMI	GCAATG	4 cut(s)	182, 1002, 1094, 2461
BseMII	CTCAG	3 cut(s)	549, 869, 2181
BseNI	ACTGG	7 cut(s)	814, 979, 1274, 1343, 1881, 2160, 2387
BseRI	GAGGAG	6 cut(s)	72, 110, 228, 527, 530, 656
BseX3I	CGGCCG	1 cut(s)	1674
BseXI	GCAGC	6 cut(s)	184, 928, 1004, 1108, 1384, 1939
BseYI	CCCAGC	2 cut(s)	1222, 1427
BsgI	GTGCAG	1 cut(s)	2411
Bsh1236I	CGCG	2 cut(s)	332, 455
Bsh1285I	CGRYCG	2 cut(s)	274, 1677
BshFI	GGCC	3 cut(s)	1421, 1676, 2112
BshTI	ACCGGT	1 cut(s)	780
BshVI	ATCGAT	2 cut(s)	270, 2355
BsiEI	CGRYCG	2 cut(s)	274, 1677
BsiSI	CCGG	3 cut(s)	242, 781, 1996
BslFI	GGGAC	3 cut(s)	1044, 1205, 2484
BslI	CCNNNNNNNGG	7 cut(s)	914, 935, 1428, 1476, 2017, 2108, 2119
BsmAI	GTCTC	6 cut(s)	190, 288, 760, 1761, 2125, 2402
BsmBI	CGTCTC	1 cut(s)	760
BsmFI	GGGAC	3 cut(s)	1044, 1205, 2484
BsmI	GAATGC	3 cut(s)	986, 1486, 1805
BsnI	GGCC	3 cut(s)	1421, 1676, 2112
Bso31I	GGTCTC	1 cut(s)	2402
Bsp119I	TTCGAA	2 cut(s)	422, 2445
Bsp13I	TCCGGA	2 cut(s)	241, 1995
Bsp1407I	TGTACA	1 cut(s)	1893
Bsp143I	GATC	9 cut(s)	271, 847, 1042, 1348, 1601, 1756, 2229, 2511, 2609
Bsp19I	CCATGG	1 cut(s)	2250
BspACI	CCGC	6 cut(s)	332, 384, 455, 458, 597, 881
BspANI	GGCC	3 cut(s)	1421, 1676, 2112
BspCNI	CTCAG	3 cut(s)	548, 868, 2180
BspDI	ATCGAT	2 cut(s)	270, 2355
BspEI	TCCGGA	2 cut(s)	241, 1995
BspFNI	CGCG	2 cut(s)	332, 455
BspLI	GGNNCC	2 cut(s)	2152, 2611
BspMAI	CTGCAG	2 cut(s)	946, 994
BspMI	ACCTGC	1 cut(s)	2519
BspPI	GGATC	2 cut(s)	2604, 2617
BspT104I	TTCGAA	2 cut(s)	422, 2445
BspTI	CTTAAG	1 cut(s)	278
BspTNI	GGTCTC	1 cut(s)	2402
BsrDI	GCAATG	4 cut(s)	182, 1002, 1094, 2461
BsrFI	RCCGGY	1 cut(s)	780
BsrGI	TGTACA	1 cut(s)	1893
BsrI	ACTGG	7 cut(s)	814, 979, 1274, 1343, 1881, 2160, 2387
BssAI	RCCGGY	1 cut(s)	780
BssECI	CCNNGG	7 cut(s)	309, 913, 931, 1855, 2107, 2250, 2347
BssMI	GATC	9 cut(s)	271, 847, 1042, 1348, 1601, 1756, 2229, 2511, 2609
BssNAI	GTATAC	1 cut(s)	522
BssT1I	CCWWGG	4 cut(s)	309, 913, 931, 2250
Bst1107I	GTATAC	1 cut(s)	522
Bst2UI	CCWGG	2 cut(s)	191, 1287
Bst4CI	ACNGT	8 cut(s)	211, 526, 628, 693, 1372, 1443, 2366, 2498
Bst6I	CTCTTC	5 cut(s)	62, 136, 504, 607, 2556
BstAFI	CTTAAG	1 cut(s)	278
BstAPI	GCANNNNNTGC	2 cut(s)	1001, 1952
BstAUI	TGTACA	1 cut(s)	1893
BstBAI	YACGTR	1 cut(s)	202
BstBI	TTCGAA	2 cut(s)	422, 2445
BstC8I	GCNNGC	4 cut(s)	170, 1002, 1626, 2452
BstDEI	CTNAG	6 cut(s)	393, 535, 762, 855, 1926, 2167
BstDSI	CCRYGG	2 cut(s)	1855, 2250
BstENI	CCTNNNNNAGG	1 cut(s)	1474
BstF5I	GGATG	2 cut(s)	1466, 2098
BstFNI	CGCG	2 cut(s)	332, 455
BstKTI	GATC	9 cut(s)	274, 850, 1045, 1351, 1604, 1759, 2232, 2514, 2612
BstMAI	GTCTC	6 cut(s)	190, 288, 760, 1761, 2125, 2402
BstMBI	GATC	9 cut(s)	271, 847, 1042, 1348, 1601, 1756, 2229, 2511, 2609
BstMCI	CGRYCG	2 cut(s)	274, 1677
BstMWI	GCNNNNNNNGC	8 cut(s)	93, 169, 554, 878, 1001, 1232, 1952, 2246
BstNI	CCWGG	2 cut(s)	191, 1287
BstNSI	RCATGY	1 cut(s)	1145
BstPAI	GACNNNNGTC	1 cut(s)	202
BstSCI	CCNGG	2 cut(s)	189, 1285
BstSFI	CTRYAG	4 cut(s)	942, 990, 1401, 2463
BstUI	CGCG	2 cut(s)	332, 455
BstV1I	GCAGC	6 cut(s)	184, 928, 1004, 1108, 1384, 1939
BstV2I	GAAGAC	1 cut(s)	1875
BstX2I	RGATCY	2 cut(s)	1042, 2609
BstXI	CCANNNNNNTGG	1 cut(s)	2606
BstYI	RGATCY	2 cut(s)	1042, 2609
BstZ17I	GTATAC	1 cut(s)	522
BstZI	CGGCCG	1 cut(s)	1674
Bsu15I	ATCGAT	2 cut(s)	270, 2355
BsuI	GTATCC	1 cut(s)	1873
BsuRI	GGCC	3 cut(s)	1421, 1676, 2112
BsuTUI	ATCGAT	2 cut(s)	270, 2355
BtgI	CCRYGG	2 cut(s)	1855, 2250
BtsCI	GGATG	2 cut(s)	1466, 2098
BtsIMutI	CAGTG	4 cut(s)	531, 543, 1237, 2552
BveI	ACCTGC	1 cut(s)	2519
Cac8I	GCNNGC	4 cut(s)	170, 1002, 1626, 2452
CaiI	CAGNNNCTG	1 cut(s)	974
Cfr10I	RCCGGY	1 cut(s)	780
Cfr13I	GGNCC	3 cut(s)	1420, 2111, 2151
ClaI	ATCGAT	2 cut(s)	270, 2355
CseI	GACGC	2 cut(s)	338, 350
CsiI	ACCWGGT	2 cut(s)	189, 1285
Csp6I	GTAC	6 cut(s)	212, 624, 1567, 1750, 1894, 2489
CspAI	ACCGGT	1 cut(s)	780
CviAII	CATG	8 cut(s)	1136, 1142, 1295, 1352, 2041, 2199, 2251, 2477
CviQI	GTAC	6 cut(s)	212, 624, 1567, 1750, 1894, 2489
DdeI	CTNAG	6 cut(s)	393, 535, 762, 855, 1926, 2167
DpnI	GATC	9 cut(s)	273, 849, 1044, 1350, 1603, 1758, 2231, 2513, 2611
DpnII	GATC	9 cut(s)	271, 847, 1042, 1348, 1601, 1756, 2229, 2511, 2609
DraIII	CACNNNGTG	1 cut(s)	193
DrdI	GACNNNNNNGTC	1 cut(s)	1328
DseDI	GACNNNNNNGTC	1 cut(s)	1328
EaeI	YGGCCR	1 cut(s)	1674
EagI	CGGCCG	1 cut(s)	1674
Eam1104I	CTCTTC	5 cut(s)	62, 136, 504, 607, 2556
EarI	CTCTTC	5 cut(s)	62, 136, 504, 607, 2556
EclXI	CGGCCG	1 cut(s)	1674
Eco130I	CCWWGG	4 cut(s)	309, 913, 931, 2250
Eco31I	GGTCTC	1 cut(s)	2402
Eco32I	GATATC	3 cut(s)	725, 1591, 2029
Eco47I	GGWCC	1 cut(s)	2151
Eco52I	CGGCCG	1 cut(s)	1674
Eco57I	CTGAAG	5 cut(s)	76, 352, 1031, 1257, 2528
Eco72I	CACGTG	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	1474
EcoRI	GAATTC	2 cut(s)	418, 2441
EcoRII	CCWGG	2 cut(s)	189, 1285
EcoRV	GATATC	3 cut(s)	725, 1591, 2029
EcoT14I	CCWWGG	4 cut(s)	309, 913, 931, 2250
EcoT22I	ATGCAT	1 cut(s)	831
ErhI	CCWWGG	4 cut(s)	309, 913, 931, 2250
Esp3I	CGTCTC	1 cut(s)	760
FaeI	CATG	8 cut(s)	1139, 1145, 1298, 1355, 2044, 2202, 2254, 2480
FaqI	GGGAC	3 cut(s)	1044, 1205, 2484
FatI	CATG	8 cut(s)	1135, 1141, 1294, 1351, 2040, 2198, 2250, 2476
FauI	CCCGC	1 cut(s)	451
FbaI	TGATCA	1 cut(s)	1756
FblI	GTMKAC	2 cut(s)	521, 1662
Fnu4HI	GCNGC	9 cut(s)	173, 456, 598, 882, 942, 993, 1122, 1398, 1953
FokI	GGATG	2 cut(s)	1453, 2085
Fsp4HI	GCNGC	9 cut(s)	173, 456, 598, 882, 942, 993, 1122, 1398, 1953
FspBI	CTAG	9 cut(s)	299, 837, 914, 932, 953, 1053, 1848, 1865, 2180
GluI	GCNGC	9 cut(s)	173, 456, 598, 882, 942, 993, 1122, 1398, 1953
GsaI	CCCAGC	2 cut(s)	1226, 1431
GsuI	CTGGAG	4 cut(s)	996, 1506, 1953, 2404
HaeIII	GGCC	3 cut(s)	1421, 1676, 2112
HapII	CCGG	3 cut(s)	242, 781, 1996
HgaI	GACGC	2 cut(s)	338, 350
Hin1II	CATG	8 cut(s)	1139, 1145, 1298, 1355, 2044, 2202, 2254, 2480
HindIII	AAGCTT	1 cut(s)	15
HpaII	CCGG	3 cut(s)	242, 781, 1996
HphI	GGTGA	7 cut(s)	26, 38, 179, 205, 929, 1596, 2291
Hpy188I	TCNGA	7 cut(s)	110, 250, 265, 640, 970, 1199, 2170
Hpy99I	CGWCG	4 cut(s)	254, 344, 363, 2498
HpyAV	CCTTC	6 cut(s)	100, 315, 319, 995, 1490, 1617
HpyCH4III	ACNGT	8 cut(s)	211, 526, 628, 693, 1372, 1443, 2366, 2498
HpyCH4IV	ACGT	7 cut(s)	201, 303, 671, 769, 1389, 2331, 2337
HpyF10VI	GCNNNNNNNGC	8 cut(s)	93, 169, 554, 878, 1001, 1232, 1952, 2246
HpyF3I	CTNAG	6 cut(s)	393, 535, 762, 855, 1926, 2167
HpySE526I	ACGT	7 cut(s)	201, 303, 671, 769, 1389, 2331, 2337
Hsp92II	CATG	8 cut(s)	1139, 1145, 1298, 1355, 2044, 2202, 2254, 2480
Kpn2I	TCCGGA	2 cut(s)	241, 1995
Ksp22I	TGATCA	1 cut(s)	1756
Kzo9I	GATC	9 cut(s)	271, 847, 1042, 1348, 1601, 1756, 2229, 2511, 2609
LmnI	GCTCC	3 cut(s)	92, 1364, 1487
Lsp1109I	GCAGC	6 cut(s)	184, 928, 1004, 1108, 1384, 1939
LweI	GCATC	5 cut(s)	1475, 1797, 1841, 2107, 2547
MabI	ACCWGGT	2 cut(s)	189, 1285
MaeI	CTAG	9 cut(s)	299, 837, 914, 932, 953, 1053, 1848, 1865, 2180
MaeII	ACGT	7 cut(s)	201, 303, 671, 769, 1389, 2331, 2337
MaeIII	GTNAC	8 cut(s)	783, 1093, 1385, 1408, 1912, 2233, 2458, 2498
MalI	GATC	9 cut(s)	273, 849, 1044, 1350, 1603, 1758, 2231, 2513, 2611
MboI	GATC	9 cut(s)	271, 847, 1042, 1348, 1601, 1756, 2229, 2511, 2609
MflI	RGATCY	2 cut(s)	1042, 2609
MlyI	GAGTC	3 cut(s)	229, 1194, 1960
MmeI	TCCRAC	5 cut(s)	273, 1005, 1222, 1620, 1965
Mph1103I	ATGCAT	1 cut(s)	831
MroI	TCCGGA	2 cut(s)	241, 1995
MroXI	GAANNNNTTC	2 cut(s)	984, 1526
MseI	TTAA	9 cut(s)	279, 441, 1167, 1335, 1503, 1682, 1833, 2303, 2534
MslI	CAYNNNNRTG	4 cut(s)	1140, 1849, 1947, 2433
MspA1I	CMGCKG	1 cut(s)	1226
MspCI	CTTAAG	1 cut(s)	278
MspI	CCGG	3 cut(s)	242, 781, 1996
MspR9I	CCNGG	2 cut(s)	191, 1287
Mva1269I	GAATGC	3 cut(s)	986, 1486, 1805
MvaI	CCWGG	2 cut(s)	191, 1287
MvnI	CGCG	2 cut(s)	332, 455
MwoI	GCNNNNNNNGC	8 cut(s)	93, 169, 554, 878, 1001, 1232, 1952, 2246
NcoI	CCATGG	1 cut(s)	2250
NdeII	GATC	9 cut(s)	271, 847, 1042, 1348, 1601, 1756, 2229, 2511, 2609
NlaIII	CATG	8 cut(s)	1139, 1145, 1298, 1355, 2044, 2202, 2254, 2480
NlaIV	GGNNCC	2 cut(s)	2152, 2611
NmeAIII	GCCGAG	2 cut(s)	1702, 2088
NmuCI	GTSAC	4 cut(s)	783, 1093, 1912, 2498
NsiI	ATGCAT	1 cut(s)	831
NspI	RCATGY	1 cut(s)	1145
NspV	TTCGAA	2 cut(s)	422, 2445
OliI	CACNNNNGTG	1 cut(s)	1947
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 336
PctI	GAATGC	3 cut(s)	986, 1486, 1805
PdmI	GAANNNNTTC	2 cut(s)	984, 1526
PinAI	ACCGGT	1 cut(s)	780
PkrI	GCNGC	9 cut(s)	174, 457, 599, 883, 943, 994, 1123, 1399, 1954
Ple19I	CGATCG	1 cut(s)	274
PleI	GAGTC	3 cut(s)	229, 1194, 1960
PmaCI	CACGTG	1 cut(s)	202
PmlI	CACGTG	1 cut(s)	202
PpsI	GAGTC	3 cut(s)	229, 1194, 1960
Ppu21I	YACGTR	1 cut(s)	202
PshAI	GACNNNNGTC	1 cut(s)	202
PshBI	ATTAAT	1 cut(s)	1503
Psp1406I	AACGTT	1 cut(s)	1389
Psp6I	CCWGG	2 cut(s)	189, 1285
PspCI	CACGTG	1 cut(s)	202
PspFI	CCCAGC	2 cut(s)	1222, 1427
PspGI	CCWGG	2 cut(s)	189, 1285
PspN4I	GGNNCC	2 cut(s)	2152, 2611
PspPI	GGNCC	3 cut(s)	1420, 2111, 2151
PsrI	GAACNNNNNNTAC	2 cut(s)	536, 568
PstI	CTGCAG	2 cut(s)	946, 994
PstNI	CAGNNNCTG	1 cut(s)	974
PsuI	RGATCY	2 cut(s)	1042, 2609
PvuI	CGATCG	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	1226
RsaI	GTAC	6 cut(s)	213, 625, 1568, 1751, 1895, 2490
RsaNI	GTAC	6 cut(s)	212, 624, 1567, 1750, 1894, 2489
RseI	CAYNNNNRTG	4 cut(s)	1140, 1849, 1947, 2433
SaqAI	TTAA	9 cut(s)	279, 441, 1167, 1335, 1503, 1682, 1833, 2303, 2534
SatI	GCNGC	9 cut(s)	173, 456, 598, 882, 942, 993, 1122, 1398, 1953
Sau3AI	GATC	9 cut(s)	271, 847, 1042, 1348, 1601, 1756, 2229, 2511, 2609
Sau96I	GGNCC	3 cut(s)	1420, 2111, 2151
SchI	GAGTC	3 cut(s)	229, 1194, 1960
ScrFI	CCNGG	2 cut(s)	191, 1287
SexAI	ACCWGGT	2 cut(s)	189, 1285
SfaNI	GCATC	5 cut(s)	1475, 1797, 1841, 2107, 2547
SfcI	CTRYAG	4 cut(s)	942, 990, 1401, 2463
SfuI	TTCGAA	2 cut(s)	422, 2445
SinI	GGWCC	1 cut(s)	2151
SmiMI	CAYNNNNRTG	4 cut(s)	1140, 1849, 1947, 2433
SmlI	CTYRAG	4 cut(s)	12, 278, 740, 2405
SmoI	CTYRAG	4 cut(s)	12, 278, 740, 2405
SsiI	CCGC	6 cut(s)	332, 384, 455, 458, 597, 881
SspI	AATATT	1 cut(s)	2289
SspMI	CTAG	9 cut(s)	299, 837, 914, 932, 953, 1053, 1848, 1865, 2180
StyD4I	CCNGG	2 cut(s)	189, 1285
StyI	CCWWGG	4 cut(s)	309, 913, 931, 2250
TaaI	ACNGT	8 cut(s)	211, 526, 628, 693, 1372, 1443, 2366, 2498
TaiI	ACGT	7 cut(s)	204, 306, 674, 772, 1392, 2334, 2340
TatI	WGTACW	2 cut(s)	1566, 1893
TauI	GCSGC	3 cut(s)	458, 600, 884
Tru1I	TTAA	9 cut(s)	279, 441, 1167, 1335, 1503, 1682, 1833, 2303, 2534
Tru9I	TTAA	9 cut(s)	279, 441, 1167, 1335, 1503, 1682, 1833, 2303, 2534
TscAI	CASTG	4 cut(s)	531, 543, 1237, 2559
TseFI	GTSAC	4 cut(s)	783, 1093, 1912, 2498
TseI	GCWGC	6 cut(s)	172, 941, 992, 1121, 1397, 1952
Tsp45I	GTSAC	4 cut(s)	783, 1093, 1912, 2498
TspDTI	ATGAA	4 cut(s)	497, 740, 1908, 2609
TspGWI	ACGGA	3 cut(s)	2033, 2070, 2445
TspRI	CASTG	4 cut(s)	531, 543, 1237, 2559
Vha464I	CTTAAG	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	2151
VspI	ATTAAT	1 cut(s)	1503
XagI	CCTNNNNNAGG	1 cut(s)	1474
XapI	RAATTY	8 cut(s)	418, 662, 1192, 1525, 1574, 1583, 2138, 2441
XbaI	TCTAGA	2 cut(s)	1847, 1864
XceI	RCATGY	1 cut(s)	1145
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1970
XmaJI	CCTAGG	2 cut(s)	913, 931
XmiI	GTMKAC	2 cut(s)	521, 1662
XmnI	GAANNNNTTC	2 cut(s)	984, 1526
XspI	CTAG	9 cut(s)	299, 837, 914, 932, 953, 1053, 1848, 1865, 2180
Zsp2I	ATGCAT	1 cut(s)	831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.