Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005831

Physical Location & Seq

Genomic Coordinates Reverse (-)

30156830 .. 30163128

Gene Structure 6299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1224900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2619 bp

ATGGCGCGCACAACCCCAATTCTCAACCAAAACAACACACGCTTGCTCTTCGCCTCCAAAACTCCCCACTCTCACTTCCACTCTCTCGCCTCTCTCCGCCTCGCCAAACCCCCATACTCCCACTCTCTCTCCTCTTCTTCTACTTCTTCTTCTTTATCATCGAGCTCGCCGTCGTGTCGTATCACGCGCGTCACCACCGTTCCGGTAGAGTACGCGCCGTCAGCTCCCGACTTCGACTTCCACCAGGAGCTCTCGCGCCTCAAATCGCTCCGTTCCAGGCTCGCTGATTGCGATTCCCTCCGCGCCAAGCTCAGAGTGATCGACGGCGATTCCAGAGTGAAGCGATTCTTCAATTCCGGCAGCAACGGCGGTTTCTCCGCGGCTTTAGGTTCGCTCAATTTGAGCTCTGAAGAGCTGTTCTTGTTCAAGTGCCTGGTTGCTGCTGGGCAAGAGCATGTGCTCGGTTGGGGGCTCCAGTTCGACAACGGCGAGGTGGAGACGGCGATGAGCTCGGTGAAGAGCGCGCTTTACGCGCTTGTCGCAATGATTGAGAAATTGGATGTGAACGACGAGGGTTCCGGGATGAAGATTGGAGATTTGGCTTTGAATGATGAAGATTTTAAGGACTTGAAGAAGCTCCTGAAGAATTTGGGAGAAATTGAACAGTTTTATAACTGCATTGGAGGAATTATTGGATACCAGATAACAGTATTGGAGATTCTAGCCCAATCGAGAGTCGAAATGCAGACTGCAAATTGGGCCAAAAGCATACAAGAGCAAATGGAATGCCAGTTTTTGGAAATTCATGCTCCCAGTGGACTTGATCTTTCTCAAAATGCAGAATATGCATCTCAAGCTGCATTATGGGGAATTCAGGGTTTGCCAGACCTAGGTGAAATTTATCCTTTGGGAGGTTCTGCCGACAGGCTTGGTTTGGTTGATCCCGAGACAGGTGAATGTCTCCCTGCCGCAATGCTTCCTTATTGTGGACGGACTTTATTGGAAGGTCTTATAAGAGATCTTCAGGCTAGAGAGTTCTTGTACTTCAAGATCTACGGGAAACAATGCATCACCCCTGTTGCAATTATGACAAGCTCTGCAAAGAACAACCATGAACACATAACTTCTCTTTGTGAAAAACTTGAATGGTTTAGAAGAGGTCGATCAAGTTTCCAACTTTTTGAACAGCCCCTTGTTCCAGCCATTGGTGCAGAAAATGGGCAATGGATAATCACAAAACCTTTTGCACCTGTATGCAAGCCTGGTGGTCATGGTGTAATATGGAAACTTGCTTATGACAAAGGCATTTTCAAATGGTTTTATGATCATGGGCGGAAGGGTGCAACTGTACGTCAAGTTAGTAATGTTGTGGCCGCTACAGATTTGACTCTCTTGGCACTGGCAGGGATTGGTTTACATCACGGCAAGAAACTGGGGTTTGCATCCTGTAAGAGGAACTTGGGGGCTACAGAAGGAATTAATGTCCTAACCGAGAAAAAAAATCTTGATGGAAGGTGGGCATATGGTTTGTCGTGCATTGAGTACACAGAGTTCGACAAGTTTGGCATAGCAGATGGACCTCATTCTCGAAATAGGTTGCAGGCAGAGTTTCCCGCCAATACAAACATCTTGTATGTAGATTTACCTTCAGCAGAGTCGGTTGGGTCAAGTAACAGTGGAAACAGCTTACCAGGCATGGTGCTGAATGTTAAAAAGCCTATAACATTTGTAGACCAATTTGGAAAACAACACAGTGTCTCTGGTGGAAGGCTTGAATGCACGATGCAAAATATTGCTGACAGCTTTCTTAATACATGTCCATCTCGATGTTATAAGGGTATTGAAGATAAGCTTGATACCTTCATTGTTTATAATGAACGAAGAAGGGTCACATCATCTGCTAAGAGGAAAAGAAGACATGCGGAGAAATCTTTACACCAAACTCCTGATGGTTCACTGTTGGATATCCTACGGAATGCCCATGATCTTCTTTCACAATGTGATATTGAACTTCCTGAGATTGGAAGTAATGAAAAATATCAAGGTTCTGGACCACCATTTCTTATTCTTCTGCACCCTGCTCTTGGCCCACTTTGGGAGGTCACCAGACAAAAATTCTACGGAGGCTCAGTATCCGAGGGCTCTGAGTTACAAGTAGAAGTTGCAGAGTTTCTGTGGAGGAATGTTCAGCTTGATGGAAGCCTGATTGTAGAGGCTGATAACGTTATGGGCTCAACTAGGATTGATCAAAATGGTGAACCCATTTTACAATATGGGCACAGGTGTGGAAGATGTAAATTGCAAAATGTAAAAGTACTAAATGATGGAATTGACTGGAACTTTGAAGACAATGTGTACTGGAAGCATGATGTTCAACGCCTCGAGGCTTGCAAGGTTGTACTGCATGGAAATGCTGAATTTGAGGCAACTGATGTTATCTTACAGGGAAATCATACATTTGAAGTTCCAAATGGCTACAAAATGAAGATCACAGCGGGAGATTCGGGTTTAGCCGCCCGATTAGATCCCATTGAACTGAACATGATGGATAGTGGAAGCTGGTTCTGGGAGTACAGGGTAAAGGGCACACACATTCAGTTGGAATTGGTAGAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006629 GO:0006725 GO:0006790 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009225 GO:0009226 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046505 GO:0046506 GO:0051748 GO:0055086 GO:0070569 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGP

Protein Analysis

873

Amino Acids

96.58

Weight (kDa)

6.15

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hexapep_UGP3_C	PF25441	706 - 869	1.7e-78	UGP3-like, C-terminal hexapeptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56040
fragaria_vesca	FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830
malus_domestica	MD01G1156200.v1.1 MD01G1156300.v1.1 MD07G1224900.v1.1
prunus_persica	Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1
pyrus_communis	pycom07g20360
rosa_chinensis	RchiOBHm_Chr1g0370701
rosa_laevigata	RLG00000027016
rosa_multiflora	Rmu_sc0004550.1_g000012
rosa_roxburghii	Rroxscaffold_4G00286290
rosa_rugosa	Rorug01G0358600
rosa_samantha	Rh1AG368300 Rh1BG331700 Rh1CG345700 Rh1DG363100
rosa_wichuraiana	Rw1G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	672, 1013, 1833, 1872
AbsI	CCTCGAGG	1 cut(s)	2381
AccB7I	CCANNNNNTGG	2 cut(s)	796, 1205
AccI	GTMKAC	1 cut(s)	1731
AccII	CGCG	9 cut(s)	7, 187, 189, 215, 256, 303, 380, 524, 533
AclI	AACGTT	1 cut(s)	2223
AclWI	GGATC	2 cut(s)	935, 2519
AcoI	YGGCCR	1 cut(s)	1371
AcsI	RAATTY	6 cut(s)	646, 801, 870, 897, 2114, 2417
AcuI	CTGAAG	4 cut(s)	429, 662, 1007, 1632
AdeI	CACNNNGTG	1 cut(s)	2000
AfaI	GTAC	8 cut(s)	212, 1043, 1350, 1544, 2316, 2357, 2400, 2573
AflIII	ACRYGT	1 cut(s)	1814
AjnI	CCWGG	5 cut(s)	243, 275, 432, 1261, 1690
AleI	CACNNNNGTG	1 cut(s)	2283
Alw21I	GWGCWC	5 cut(s)	167, 252, 407, 462, 512
Alw26I	GTCTC	4 cut(s)	491, 941, 965, 1762
AlwI	GGATC	2 cut(s)	935, 2519
Ama87I	CYCGRG	2 cut(s)	944, 2381
AoxI	GGCC	3 cut(s)	759, 1371, 2086
ApeKI	GCWGC	3 cut(s)	360, 440, 857
ApoI	RAATTY	6 cut(s)	646, 801, 870, 897, 2114, 2417
ArsI	GACNNNNNNTTYG	2 cut(s)	2324, 2356
AseI	ATTAAT	1 cut(s)	1479
Asp700I	GAANNNNTTC	1 cut(s)	344
AspA2I	CCTAGG	1 cut(s)	889
AspLEI	GCGC	9 cut(s)	7, 9, 189, 217, 258, 305, 524, 526, 535
AspS9I	GGNCC	4 cut(s)	759, 1577, 2051, 2087
AsuC2I	CCSGG	1 cut(s)	580
AsuHPI	GGTGA	7 cut(s)	184, 526, 905, 965, 1063, 2095, 2267
AvaI	CYCGRG	2 cut(s)	944, 2381
AvaII	GGWCC	2 cut(s)	1577, 2051
AvrII	CCTAGG	1 cut(s)	889
BaeGI	GKGCMC	2 cut(s)	2280, 2588
BanII	GRGCYC	7 cut(s)	167, 252, 407, 474, 512, 2144, 2234
BbsI	GAAGAC	2 cut(s)	1921, 2352
Bbv12I	GWGCWC	5 cut(s)	167, 252, 407, 462, 512
BbvI	GCAGC	3 cut(s)	372, 427, 844
BccI	CCATC	7 cut(s)	1502, 1568, 1828, 1943, 2189, 2318, 2539
BceAI	ACGGC	7 cut(s)	154, 202, 340, 382, 502, 516, 1438
BciT130I	CCWGG	5 cut(s)	245, 277, 434, 1263, 1692
BciVI	GTATCC	2 cut(s)	689, 2143
BclI	TGATCA	2 cut(s)	1324, 2245
BcnI	CCSGG	1 cut(s)	580
BcoDI	GTCTC	4 cut(s)	491, 941, 965, 1762
BfaI	CTAG	4 cut(s)	722, 890, 1029, 2238
BfmI	CTRYAG	2 cut(s)	1377, 1467
BfuI	GTATCC	2 cut(s)	689, 2143
BglII	AGATCT	2 cut(s)	1018, 1050
BisI	GCNGC	7 cut(s)	361, 381, 441, 858, 969, 1374, 2514
BlnI	CCTAGG	1 cut(s)	889
BlsI	GCNGC	7 cut(s)	362, 382, 442, 859, 970, 1375, 2515
BmcAI	AGTACT	1 cut(s)	2316
Bme1390I	CCNGG	6 cut(s)	245, 277, 434, 580, 1263, 1692
Bme18I	GGWCC	2 cut(s)	1577, 2051
BmeT110I	CYCGRG	2 cut(s)	944, 2381
BmgT120I	GGNCC	4 cut(s)	759, 1577, 2051, 2087
BmiI	GGNNCC	2 cut(s)	473, 577
BmrFI	CCNGG	6 cut(s)	245, 277, 434, 580, 1263, 1692
BmrI	ACTGGG	2 cut(s)	807, 1442
BmsI	GCATC	4 cut(s)	857, 1077, 1451, 1773
BmuI	ACTGGG	2 cut(s)	807, 1442
BpiI	GAAGAC	2 cut(s)	1921, 2352
BpmI	CTGGAG	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	837
BpuMI	CCSGG	1 cut(s)	580
BsaJI	CCNNGG	3 cut(s)	378, 889, 2136
BsaWI	WCCGGW	1 cut(s)	202
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 143, 2115, 2145
Bse1I	ACTGG	7 cut(s)	475, 790, 813, 1404, 1437, 2339, 2363
Bse3DI	GCAATG	3 cut(s)	549, 978, 1229
BseBI	CCWGG	5 cut(s)	245, 277, 434, 1263, 1692
BseDI	CCNNGG	3 cut(s)	378, 889, 2136
BseGI	GGATG	3 cut(s)	565, 588, 1442
BseMI	GCAATG	3 cut(s)	549, 978, 1229
BseMII	CTCAG	4 cut(s)	325, 2007, 2136, 2142
BseNI	ACTGG	7 cut(s)	475, 790, 813, 1404, 1437, 2339, 2363
BsePI	GCGCGC	2 cut(s)	5, 522
BseRI	GAGGAG	1 cut(s)	121
BseSI	GKGCMC	2 cut(s)	2280, 2588
BseXI	GCAGC	3 cut(s)	372, 427, 844
BseYI	CCCAGC	1 cut(s)	443
BsgI	GTGCAG	2 cut(s)	1230, 2057
Bsh1236I	CGCG	9 cut(s)	7, 187, 189, 215, 256, 303, 380, 524, 533
BshFI	GGCC	3 cut(s)	761, 1373, 2088
BsiHKAI	GWGCWC	5 cut(s)	167, 252, 407, 462, 512
BsiHKCI	CYCGRG	2 cut(s)	944, 2381
BsiSI	CCGG	3 cut(s)	203, 357, 579
BsmAI	GTCTC	4 cut(s)	491, 941, 965, 1762
BsmBI	CGTCTC	1 cut(s)	491
BsmI	GAATGC	3 cut(s)	791, 1781, 1981
BsnI	GGCC	3 cut(s)	761, 1373, 2088
BsoBI	CYCGRG	2 cut(s)	944, 2381
BspANI	GGCC	3 cut(s)	761, 1373, 2088
BspCNI	CTCAG	4 cut(s)	324, 2008, 2137, 2141
BspFNI	CGCG	9 cut(s)	7, 187, 189, 215, 256, 303, 380, 524, 533
BspLI	GGNNCC	2 cut(s)	473, 577
BspPI	GGATC	2 cut(s)	935, 2519
BspQI	GCTCTTC	3 cut(s)	53, 405, 512
BsrDI	GCAATG	3 cut(s)	549, 978, 1229
BsrI	ACTGG	7 cut(s)	475, 790, 813, 1404, 1437, 2339, 2363
BssECI	CCNNGG	3 cut(s)	378, 889, 2136
BssHII	GCGCGC	2 cut(s)	5, 522
BssT1I	CCWWGG	1 cut(s)	889
Bst2UI	CCWGG	5 cut(s)	245, 277, 434, 1263, 1692
Bst4CI	ACNGT	7 cut(s)	199, 666, 709, 1348, 1676, 1754, 1959
Bst6I	CTCTTC	5 cut(s)	53, 139, 405, 512, 1150
BstAPI	GCANNNNNTGC	1 cut(s)	845
BstC8I	GCNNGC	8 cut(s)	7, 44, 167, 282, 524, 1259, 1602, 2389
BstDEI	CTNAG	5 cut(s)	311, 1902, 2016, 2128, 2145
BstDSI	CCRYGG	1 cut(s)	378
BstEII	GGTNACC	1 cut(s)	2101
BstENI	CCTNNNNNAGG	2 cut(s)	909, 1450
BstF5I	GGATG	3 cut(s)	565, 588, 1442
BstFNI	CGCG	9 cut(s)	7, 187, 189, 215, 256, 303, 380, 524, 533
BstHHI	GCGC	9 cut(s)	7, 9, 189, 217, 258, 305, 524, 526, 535
BstMAI	GTCTC	4 cut(s)	491, 941, 965, 1762
BstNI	CCWGG	5 cut(s)	245, 277, 434, 1263, 1692
BstNSI	RCATGY	3 cut(s)	458, 1818, 1922
BstPI	GGTNACC	1 cut(s)	2101
BstSCI	CCNGG	6 cut(s)	243, 275, 432, 578, 1261, 1690
BstSFI	CTRYAG	2 cut(s)	1377, 1467
BstSLI	GKGCMC	2 cut(s)	2280, 2588
BstUI	CGCG	9 cut(s)	7, 187, 189, 215, 256, 303, 380, 524, 533
BstV1I	GCAGC	3 cut(s)	372, 427, 844
BstV2I	GAAGAC	2 cut(s)	1921, 2352
BstX2I	RGATCY	3 cut(s)	1018, 1050, 2524
BstYI	RGATCY	3 cut(s)	1018, 1050, 2524
BsuI	GTATCC	2 cut(s)	689, 2143
BsuRI	GGCC	3 cut(s)	761, 1373, 2088
BtgI	CCRYGG	1 cut(s)	378
BtgZI	GCGATG	1 cut(s)	518
BtsCI	GGATG	3 cut(s)	565, 588, 1442
BtsIMutI	CAGTG	5 cut(s)	820, 1397, 1681, 1759, 1955
Cac8I	GCNNGC	8 cut(s)	7, 44, 167, 282, 524, 1259, 1602, 2389
CfoI	GCGC	9 cut(s)	7, 9, 189, 217, 258, 305, 524, 526, 535
Cfr13I	GGNCC	4 cut(s)	759, 1577, 2051, 2087
Cfr42I	CCGCGG	1 cut(s)	381
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	8 cut(s)	211, 1042, 1349, 1543, 2315, 2356, 2399, 2572
CspCI	CAANNNNNGTGG	2 cut(s)	1246, 1281
CviQI	GTAC	8 cut(s)	211, 1042, 1349, 1543, 2315, 2356, 2399, 2572
DdeI	CTNAG	5 cut(s)	311, 1902, 2016, 2128, 2145
DraIII	CACNNNGTG	1 cut(s)	2000
EaeI	YGGCCR	1 cut(s)	1371
Eam1104I	CTCTTC	5 cut(s)	53, 139, 405, 512, 1150
EarI	CTCTTC	5 cut(s)	53, 139, 405, 512, 1150
EciI	GGCGGA	2 cut(s)	86, 1348
Ecl136II	GAGCTC	4 cut(s)	165, 250, 405, 510
Eco130I	CCWWGG	1 cut(s)	889
Eco24I	GRGCYC	7 cut(s)	167, 252, 407, 474, 512, 2144, 2234
Eco32I	GATATC	1 cut(s)	1966
Eco47I	GGWCC	2 cut(s)	1577, 2051
Eco53kI	GAGCTC	4 cut(s)	165, 250, 405, 510
Eco57I	CTGAAG	4 cut(s)	429, 662, 1007, 1632
Eco88I	CYCGRG	2 cut(s)	944, 2381
Eco91I	GGTNACC	1 cut(s)	2101
EcoICRI	GAGCTC	4 cut(s)	165, 250, 405, 510
EcoNI	CCTNNNNNAGG	2 cut(s)	909, 1450
EcoO65I	GGTNACC	1 cut(s)	2101
EcoRI	GAATTC	1 cut(s)	870
EcoRII	CCWGG	5 cut(s)	243, 275, 432, 1261, 1690
EcoRV	GATATC	1 cut(s)	1966
EcoT14I	CCWWGG	1 cut(s)	889
EcoT22I	ATGCAT	2 cut(s)	850, 1070
EcoT38I	GRGCYC	7 cut(s)	167, 252, 407, 474, 512, 2144, 2234
ErhI	CCWWGG	1 cut(s)	889
Esp3I	CGTCTC	1 cut(s)	491
FalI	AAGNNNNNCTT	6 cut(s)	332, 364, 1442, 1474, 1836, 1868
FauI	CCCGC	2 cut(s)	1621, 2488
FauNDI	CATATG	1 cut(s)	1522
FbaI	TGATCA	2 cut(s)	1324, 2245
FblI	GTMKAC	1 cut(s)	1731
Fnu4HI	GCNGC	7 cut(s)	361, 381, 441, 858, 969, 1374, 2514
FokI	GGATG	3 cut(s)	572, 595, 1429
FriOI	GRGCYC	7 cut(s)	167, 252, 407, 474, 512, 2144, 2234
Fsp4HI	GCNGC	7 cut(s)	361, 381, 441, 858, 969, 1374, 2514
FspBI	CTAG	4 cut(s)	722, 890, 1029, 2238
GlaI	GCGC	9 cut(s)	6, 8, 188, 216, 257, 304, 523, 525, 534
GluI	GCNGC	7 cut(s)	361, 381, 441, 858, 969, 1374, 2514
GsaI	CCCAGC	1 cut(s)	447
GsuI	CTGGAG	1 cut(s)	458
HaeIII	GGCC	3 cut(s)	761, 1373, 2088
HapII	CCGG	3 cut(s)	203, 357, 579
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	9 cut(s)	7, 9, 189, 217, 258, 305, 524, 526, 535
Hin6I	GCGC	9 cut(s)	5, 7, 187, 215, 256, 303, 522, 524, 533
HinP1I	GCGC	9 cut(s)	5, 7, 187, 215, 256, 303, 522, 524, 533
HindIII	AAGCTT	1 cut(s)	1850
HinfI	GANTC	8 cut(s)	293, 329, 345, 718, 735, 1387, 1655, 2501
HpaII	CCGG	3 cut(s)	203, 357, 579
HphI	GGTGA	7 cut(s)	184, 526, 905, 965, 1063, 2095, 2267
Hpy166II	GTNNAC	9 cut(s)	565, 818, 989, 1415, 1545, 1732, 1955, 2258, 2356
Hpy188I	TCNGA	4 cut(s)	314, 409, 2137, 2146
Hpy8I	GTNNAC	9 cut(s)	565, 818, 989, 1415, 1545, 1732, 1955, 2258, 2356
Hpy99I	CGWCG	3 cut(s)	175, 326, 572
HpyAV	CCTTC	8 cut(s)	998, 1330, 1466, 1506, 1656, 1761, 1870, 1878
HpyCH4III	ACNGT	7 cut(s)	199, 666, 709, 1348, 1676, 1754, 1959
HpyCH4IV	ACGT	2 cut(s)	1351, 2223
HpyF3I	CTNAG	5 cut(s)	311, 1902, 2016, 2128, 2145
HpySE526I	ACGT	2 cut(s)	1351, 2223
HspAI	GCGC	9 cut(s)	5, 7, 187, 215, 256, 303, 522, 524, 533
Ksp22I	TGATCA	2 cut(s)	1324, 2245
KspI	CCGCGG	1 cut(s)	381
LguI	GCTCTTC	3 cut(s)	53, 405, 512
LmnI	GCTCC	6 cut(s)	229, 247, 273, 477, 642, 814
Lsp1109I	GCAGC	3 cut(s)	372, 427, 844
LweI	GCATC	4 cut(s)	857, 1077, 1451, 1773
MaeI	CTAG	4 cut(s)	722, 890, 1029, 2238
MaeII	ACGT	2 cut(s)	1351, 2223
MaeIII	GTNAC	5 cut(s)	190, 1670, 1888, 2101, 2148
MflI	RGATCY	3 cut(s)	1018, 1050, 2524
MlyI	GAGTC	3 cut(s)	744, 1381, 1664
MmeI	TCCRAC	3 cut(s)	1198, 1941, 2580
Mph1103I	ATGCAT	2 cut(s)	850, 1070
MroXI	GAANNNNTTC	1 cut(s)	344
MseI	TTAA	4 cut(s)	621, 1479, 1710, 1809
MslI	CAYNNNNRTG	4 cut(s)	1252, 1825, 2283, 2409
MspA1I	CMGCKG	2 cut(s)	380, 2495
MspI	CCGG	3 cut(s)	203, 357, 579
MspR9I	CCNGG	6 cut(s)	245, 277, 434, 580, 1263, 1692
Mva1269I	GAATGC	3 cut(s)	791, 1781, 1981
MvaI	CCWGG	5 cut(s)	245, 277, 434, 1263, 1692
MvnI	CGCG	9 cut(s)	7, 187, 189, 215, 256, 303, 380, 524, 533
NciI	CCSGG	1 cut(s)	580
NdeI	CATATG	1 cut(s)	1522
NlaIV	GGNNCC	2 cut(s)	473, 577
NmuCI	GTSAC	3 cut(s)	190, 1888, 2101
NsiI	ATGCAT	2 cut(s)	850, 1070
NspI	RCATGY	3 cut(s)	458, 1818, 1922
OliI	CACNNNNGTG	1 cut(s)	2283
PaeR7I	CTCGAG	1 cut(s)	2381
PauI	GCGCGC	2 cut(s)	5, 522
PciI	ACATGT	1 cut(s)	1814
PciSI	GCTCTTC	3 cut(s)	53, 405, 512
PcsI	WCGNNNNNNNCGW	3 cut(s)	167, 288, 486
PctI	GAATGC	3 cut(s)	791, 1781, 1981
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	5 cut(s)	293, 329, 345, 718, 2501
PflMI	CCANNNNNTGG	2 cut(s)	796, 1205
PfoI	TCCNGGA	1 cut(s)	578
PkrI	GCNGC	7 cut(s)	362, 382, 442, 859, 970, 1375, 2515
PleI	GAGTC	3 cut(s)	743, 1381, 1663
PpsI	GAGTC	3 cut(s)	743, 1381, 1663
PscI	ACATGT	1 cut(s)	1814
PshBI	ATTAAT	1 cut(s)	1479
PsiI	TTATAA	4 cut(s)	672, 1013, 1833, 1872
Psp124BI	GAGCTC	4 cut(s)	167, 252, 407, 512
Psp1406I	AACGTT	1 cut(s)	2223
Psp6I	CCWGG	5 cut(s)	243, 275, 432, 1261, 1690
PspEI	GGTNACC	1 cut(s)	2101
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	5 cut(s)	243, 275, 432, 1261, 1690
PspN4I	GGNNCC	2 cut(s)	473, 577
PspPI	GGNCC	4 cut(s)	759, 1577, 2051, 2087
PspXI	VCTCGAGB	1 cut(s)	2381
PsrI	GAACNNNNNNTAC	4 cut(s)	1535, 1567, 2250, 2282
PsuI	RGATCY	3 cut(s)	1018, 1050, 2524
PteI	GCGCGC	2 cut(s)	5, 522
RsaI	GTAC	8 cut(s)	212, 1043, 1350, 1544, 2316, 2357, 2400, 2573
RsaNI	GTAC	8 cut(s)	211, 1042, 1349, 1543, 2315, 2356, 2399, 2572
RseI	CAYNNNNRTG	4 cut(s)	1252, 1825, 2283, 2409
SacI	GAGCTC	4 cut(s)	167, 252, 407, 512
SacII	CCGCGG	1 cut(s)	381
SapI	GCTCTTC	3 cut(s)	53, 405, 512
SaqAI	TTAA	4 cut(s)	621, 1479, 1710, 1809
SatI	GCNGC	7 cut(s)	361, 381, 441, 858, 969, 1374, 2514
Sau96I	GGNCC	4 cut(s)	759, 1577, 2051, 2087
ScaI	AGTACT	1 cut(s)	2316
SchI	GAGTC	3 cut(s)	744, 1381, 1664
ScrFI	CCNGG	6 cut(s)	245, 277, 434, 580, 1263, 1692
SfaNI	GCATC	4 cut(s)	857, 1077, 1451, 1773
SfcI	CTRYAG	2 cut(s)	1377, 1467
Sfr274I	CTCGAG	1 cut(s)	2381
Sfr303I	CCGCGG	1 cut(s)	381
SgrBI	CCGCGG	1 cut(s)	381
SinI	GGWCC	2 cut(s)	1577, 2051
SlaI	CTCGAG	1 cut(s)	2381
SmiMI	CAYNNNNRTG	4 cut(s)	1252, 1825, 2283, 2409
SmlI	CTYRAG	2 cut(s)	852, 2381
SmoI	CTYRAG	2 cut(s)	852, 2381
SspI	AATATT	1 cut(s)	1792
SspMI	CTAG	4 cut(s)	722, 890, 1029, 2238
SstI	GAGCTC	4 cut(s)	167, 252, 407, 512
StyD4I	CCNGG	6 cut(s)	243, 275, 432, 578, 1261, 1690
StyI	CCWWGG	1 cut(s)	889
TaaI	ACNGT	7 cut(s)	199, 666, 709, 1348, 1676, 1754, 1959
TaiI	ACGT	2 cut(s)	1354, 2226
TatI	WGTACW	6 cut(s)	1041, 1542, 2314, 2355, 2398, 2571
TauI	GCSGC	4 cut(s)	383, 971, 1376, 2516
TfiI	GAWTC	5 cut(s)	293, 329, 345, 718, 2501
Tru1I	TTAA	4 cut(s)	621, 1479, 1710, 1809
Tru9I	TTAA	4 cut(s)	621, 1479, 1710, 1809
TscAI	CASTG	5 cut(s)	820, 1404, 1681, 1759, 1962
TseFI	GTSAC	3 cut(s)	190, 1888, 2101
TseI	GCWGC	3 cut(s)	360, 440, 857
Tsp45I	GTSAC	3 cut(s)	190, 1888, 2101
TspDTI	ATGAA	8 cut(s)	599, 627, 794, 1128, 1852, 1890, 2046, 2498
TspGWI	ACGGA	4 cut(s)	260, 1006, 1987, 2136
TspRI	CASTG	5 cut(s)	820, 1404, 1681, 1759, 1962
Van91I	CCANNNNNTGG	2 cut(s)	796, 1205
VpaK11BI	GGWCC	2 cut(s)	1577, 2051
VspI	ATTAAT	1 cut(s)	1479
XagI	CCTNNNNNAGG	2 cut(s)	909, 1450
XapI	RAATTY	6 cut(s)	646, 801, 870, 897, 2114, 2417
XceI	RCATGY	3 cut(s)	458, 1818, 1922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1946
XhoI	CTCGAG	1 cut(s)	2381
XmaJI	CCTAGG	1 cut(s)	889
XmiI	GTMKAC	1 cut(s)	1731
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	4 cut(s)	722, 890, 1029, 2238
ZrmI	AGTACT	1 cut(s)	2316
Zsp2I	ATGCAT	2 cut(s)	850, 1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.