Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005831

Physical Location & Seq

Genomic Coordinates Forward (+)

7374616 .. 7380895

Gene Structure 6280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00286290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2565 bp

ATGGCGCGCTCAGCTCCAATTCTCAACCGCGACACCTCGCACTTGCTCTTCACCTTCAAACCTCCCCACTCTCCCTTCCACTCTCTCACTTCTCTCCGCCTCACCAAGCCTACTCTCCTCCCTACTTTTCTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGCCTGGTTCATGTGTCACGCGCGTCACCACCGTCCCGGTAGAGTACGCGCCGCCGGCTCCCGAATTCGAGTTCCACATCGAGCTTGCGCGCCTCAAGTCTCTCCGCTCCCGCCTCGCCGGCGCCAAATCGCTACGCGCCAAAACCAGAGTGATCGACGGAGATTCCAGAGTGAAAAGATTCTTCAATTCCGGCAACAACCGAGTCTTCTCTGCGGTTTTGGCCTCGCTGGATTTGAGTCCGACCGAGTTATTCTTGTTCAAGTGCCTCATCGCCGCCGGTCAAGAGCACGTGCTCGGCTGGGGGTTTGAGTTCGCCGAGAGCGAGGCGGAGCCGGCCAGGAGCCCCGTGAAGACCGCGTTTTACGCCATTGTTGAAATGATTGAGAAATTGGATGTGAACAGTGACGGTTCGGGGAAGAAGAAGAAGAAGAAGGTTCGGTTTGCTTTGAATGATGAAGATTTTGAGGACTTGAAGAAGCTATTGAAGAATTTGGGAGAGGTTGAACAGTTCTATAACTGCATTGGAGGAGTGATTGGATATCAGATAACAGTAATGGAGCTTCTAGCGCAATCAAGAGTTGAAATGCAGACTACAAATTGGTATAACAACATACAAGAGCAGATGGAATGCCAGTTTCTGGATATTCATGCACCCAGTGGACTTGATCTTTCTGAAAATGCAGAATATGCAGCTCAAGCTGCTCTATGGGGAATTCAGGGTTTGCCAGACCTAGGTGAAATTTATCCTCTGGGAGGCTCGGCCGACAGGCTTGGTTTGGTTGATCCTGATACAGGTGAATGTCTCCCAGCTGCAATGCTTCCTTATTGTGGGCGGACTTTATTGGAAGGTCTTATAAGAGATCTTCAGTATATTGATTGCAAGGCTCGAGAGTTTTTGTACTTCAAGATTTATGGGAAGCAGTGCATCACTCCTGTTGCTATCATGACAAGTGCTGCAAAGAACAACCATGAACACATAACTTCTCTTTGTGAAAAACTTGAATGGTTTAAGAGAGGTCGATCAAGTTTCCAACTTTTTGAACAGCCCCTTGTTCCAGCTGTTAGTGCAGAGGATGGGCAATGGATAATCAAGAAACCTTTTGCTCCCATTTGCAAGCCTGGTGGTCATGGTGTGATATGGAAACTTGCTTATGATAAAGGCATTTTCCAATGGTTTTATGATCATGGACGTAAAGGTGCAACTGTACGACAAGTTAGCAATGTTGTGGCTGCTACAGATTTGACTCTCTTGGCACTAGCAGGGATTGGTTTACACCATGGGAAGAAACTGGGGTTTGCTTCCTGTAAGAGGAACTCGGGGGCTACAGAAGGAATTAATGTTCTAATGGAGAAAAAAATCTGGATGGAAGGTGGGCATATGGCAGAGTTCCCTGCCAATACAAACATTTTGTATGTAGACTTACCTTCCGCGGAGTTGGTGGGTTCCAGTAAGAATACAGACAGCTTACCTGGCATGGTGTTGAATGTTAAAAAGGCGATATCATTTGTAGACAATTTTGGAAATCCACACAGTGTTCCTGGTGGCAGGCTTGAATGCACAATGCAAAATATTGCCGACAATTTTCTTAATACACATCCATCTAGAGATTATAAAGGCATTGAAGATAAGCTTGATACCTTTATTGTTTTTAATAAAAGAAGACGGGTTACATCATCTACTAAGAGGAAAAGAAGGCATGCAGACAAATCTTTACACCAAACTCCGGATGGTTCACTGTTGGATATCCTAAGAAATGCTCATGACCTTCTGTCTCAGTGTGATATTCAACTTCCTGAGATTGGAAGTAATGACAAGTATCTAAATTCTGAACCACCATTTCTTATTCTTCTGCACCCTGCTCTTGGCCCCCTTTGGGAGGTCACCAGACAAAAGTTCTATGGAGGCTCAATATGCAAAGGCTCCGAGTTACAAGTAGAGGTCGCAGAGTTCCTGTGGAGGAATGTCCAGCTTGATGGAAGCCTGATCATAGAGGCTGATAATGTTATGGGCTCAAGTAGGGTTGGTGAAGATGGTGAACCTATTTTACAATATGGACACAGGTGTGGAAGGTGTAAATTACAGAATGTAAGAGTATTGAATGAGGGAATTGACTGGAATTTTAAGGACAATGTCTATTGGAAGCATGTTGTGCAGCGCATCGAAGCATGTAAGGTTGTACTGCATGGAAATGCTGAGTTTGAGGCAACTGATGTTATCTTAAAGGGAAATCATATATTTGAAGTTCCAAATGGCTACAAAATGAAGATCACGCCAGGAGATTCAGGTTTAGCGATCGGATTAGATCCTATCGCAGAGAATATGATGGACAGTGGAAGCTGGTATTGGAAGTACGGGATCAAGGGCACAAATATTCAGTTGGAATTGGTAGAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006629 GO:0006725 GO:0006790 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009225 GO:0009226 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046505 GO:0046506 GO:0051748 GO:0055086 GO:0070569 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGP

Protein Analysis

854

Amino Acids

95.01

Weight (kDa)

6.91

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGP	PF01704	346 - 474	1e-05	UTP--glucose-1-phosphate uridylyltransferase
Hexapep_UGP3_C	PF25441	688 - 851	1.5e-75	UGP3-like, C-terminal hexapeptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56040
fragaria_vesca	FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830
malus_domestica	MD01G1156200.v1.1 MD01G1156300.v1.1 MD07G1224900.v1.1
prunus_persica	Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1
pyrus_communis	pycom07g20360
rosa_chinensis	RchiOBHm_Chr1g0370701
rosa_laevigata	RLG00000027016
rosa_multiflora	Rmu_sc0004550.1_g000012
rosa_roxburghii	Rroxscaffold_4G00286290
rosa_rugosa	Rorug01G0358600
rosa_samantha	Rh1AG368300 Rh1BG331700 Rh1CG345700 Rh1DG363100
rosa_wichuraiana	Rw1G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1022, 1779
AccB1I	GGYRCC	1 cut(s)	287
AccB7I	CCANNNNNTGG	1 cut(s)	805
AccBSI	CCGCTC	1 cut(s)	273
AccI	GTMKAC	2 cut(s)	1584, 1677
AccII	CGCG	9 cut(s)	7, 30, 187, 189, 215, 256, 303, 524, 1598
AccIII	TCCGGA	1 cut(s)	1891
AclWI	GGATC	3 cut(s)	944, 2465, 2531
AcoI	YGGCCR	2 cut(s)	501, 927
AcsI	RAATTY	6 cut(s)	230, 655, 879, 906, 1990, 2284
AcuI	CTGAAG	1 cut(s)	1016
AcvI	CACGTG	1 cut(s)	457
AcyI	GRCGYC	1 cut(s)	288
AdeI	CACNNNGTG	2 cut(s)	824, 1700
AfaI	GTAC	5 cut(s)	212, 1067, 1374, 2346, 2519
AhdI	GACNNNNNGTC	1 cut(s)	1936
AjnI	CCWGG	6 cut(s)	169, 503, 1285, 1636, 1705, 2440
AjuI	GAANNNNNNNTTGG	2 cut(s)	2494, 2526
AleI	CACNNNNGTG	1 cut(s)	2229
AloI	GAACNNNNNNTCC	2 cut(s)	1491, 1523
Alw21I	GWGCWC	2 cut(s)	456, 462
Alw26I	GTCTC	3 cut(s)	270, 974, 1944
AlwI	GGATC	3 cut(s)	944, 2465, 2531
AlwNI	CAGNNNCTG	1 cut(s)	805
Ama87I	CYCGRG	2 cut(s)	1053, 1483
Aor13HI	TCCGGA	1 cut(s)	1891
AoxI	GGCC	4 cut(s)	387, 501, 927, 2032
ApeKI	GCWGC	6 cut(s)	857, 866, 977, 1121, 1397, 2320
ApoI	RAATTY	6 cut(s)	230, 655, 879, 906, 1990, 2284
AseI	ATTAAT	1 cut(s)	1503
Asp700I	GAANNNNTTC	1 cut(s)	344
AspA2I	CCTAGG	1 cut(s)	898
AspS9I	GGNCC	1 cut(s)	2033
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	8 cut(s)	43, 94, 184, 914, 974, 2041, 2204, 2213
AvaI	CYCGRG	2 cut(s)	1053, 1483
AvrII	CCTAGG	1 cut(s)	898
BaeGI	GKGCMC	1 cut(s)	2534
BanI	GGYRCC	1 cut(s)	287
BanII	GRGCYC	2 cut(s)	512, 2180
BarI	GAAGNNNNNNTAC	4 cut(s)	711, 743, 1819, 1851
BbrPI	CACGTG	1 cut(s)	457
BbsI	GAAGAC	3 cut(s)	364, 524, 1834
Bbv12I	GWGCWC	2 cut(s)	456, 462
BbvI	GCAGC	6 cut(s)	853, 869, 964, 1108, 1384, 2332
BccI	CCATC	8 cut(s)	784, 1235, 1525, 1774, 1889, 2135, 2192, 2485
BciT130I	CCWGG	6 cut(s)	171, 505, 1287, 1638, 1707, 2442
BclI	TGATCA	2 cut(s)	1348, 2151
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	3 cut(s)	270, 974, 1944
BfaI	CTAG	4 cut(s)	731, 899, 1424, 1770
BfmI	CTRYAG	2 cut(s)	1401, 1491
BfoI	RGCGCY	1 cut(s)	291
BglI	GCCNNNNNGGC	1 cut(s)	285
BglII	AGATCT	1 cut(s)	1027
BisI	GCNGC	8 cut(s)	218, 441, 858, 867, 978, 1122, 1398, 2321
BlnI	CCTAGG	1 cut(s)	898
BlpI	GCTNAGC	1 cut(s)	10
BlsI	GCNGC	8 cut(s)	219, 442, 859, 868, 979, 1123, 1399, 2322
Bme1390I	CCNGG	7 cut(s)	171, 203, 505, 1287, 1638, 1707, 2442
BmeRI	GACNNNNNGTC	1 cut(s)	1936
BmeT110I	CYCGRG	2 cut(s)	1053, 1483
BmgT120I	GGNCC	1 cut(s)	2033
BmiI	GGNNCC	7 cut(s)	225, 289, 498, 509, 1612, 2035, 2089
BmrFI	CCNGG	7 cut(s)	171, 203, 505, 1287, 1638, 1707, 2442
BmrI	ACTGGG	2 cut(s)	816, 1466
BmsI	GCATC	2 cut(s)	1101, 2334
BmuI	ACTGGG	2 cut(s)	816, 1466
BpiI	GAAGAC	3 cut(s)	364, 524, 1834
Bpu1102I	GCTNAGC	1 cut(s)	10
BpuEI	CTTGAG	3 cut(s)	245, 846, 2164
BpuMI	CCSGG	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	457
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	3 cut(s)	898, 1444, 1596
BsaWI	WCCGGW	1 cut(s)	1891
Bse118I	RCCGGY	4 cut(s)	220, 284, 443, 499
Bse1I	ACTGG	5 cut(s)	799, 822, 1461, 1614, 2285
Bse3DI	GCAATG	3 cut(s)	987, 1253, 1393
BseAI	TCCGGA	1 cut(s)	1891
BseBI	CCWGG	6 cut(s)	171, 505, 1287, 1638, 1707, 2442
BseDI	CCNNGG	3 cut(s)	898, 1444, 1596
BseGI	GGATG	5 cut(s)	565, 1246, 1536, 1762, 1900
BseMI	GCAATG	3 cut(s)	987, 1253, 1393
BseMII	CTCAG	4 cut(s)	24, 1953, 1955, 2352
BseNI	ACTGG	5 cut(s)	799, 822, 1461, 1614, 2285
BsePI	GCGCGC	2 cut(s)	5, 254
BseRI	GAGGAG	2 cut(s)	107, 708
BseSI	GKGCMC	1 cut(s)	2534
BseX3I	CGGCCG	1 cut(s)	927
BseXI	GCAGC	6 cut(s)	853, 869, 964, 1108, 1384, 2332
BseYI	CCCAGC	2 cut(s)	465, 973
BsgI	GTGCAG	3 cut(s)	1254, 2003, 2339
Bsh1236I	CGCG	9 cut(s)	7, 30, 187, 189, 215, 256, 303, 524, 1598
Bsh1285I	CGRYCG	3 cut(s)	411, 930, 2463
BshFI	GGCC	4 cut(s)	389, 503, 929, 2034
BshNI	GGYRCC	1 cut(s)	287
BsiEI	CGRYCG	3 cut(s)	411, 930, 2463
BsiHKAI	GWGCWC	2 cut(s)	456, 462
BsiHKCI	CYCGRG	2 cut(s)	1053, 1483
BsiSI	CCGG	7 cut(s)	203, 221, 285, 357, 444, 500, 1892
BslFI	GGGAC	1 cut(s)	185
BsmAI	GTCTC	3 cut(s)	270, 974, 1944
BsmFI	GGGAC	1 cut(s)	185
BsmI	GAATGC	2 cut(s)	800, 1727
BsnI	GGCC	4 cut(s)	389, 503, 929, 2034
BsoBI	CYCGRG	2 cut(s)	1053, 1483
Bsp1286I	GDGCHC	5 cut(s)	456, 462, 512, 2180, 2534
Bsp13I	TCCGGA	1 cut(s)	1891
Bsp1720I	GCTNAGC	1 cut(s)	10
Bsp19I	CCATGG	1 cut(s)	1444
BspANI	GGCC	4 cut(s)	389, 503, 929, 2034
BspCNI	CTCAG	4 cut(s)	23, 1954, 1954, 2353
BspEI	TCCGGA	1 cut(s)	1891
BspFNI	CGCG	9 cut(s)	7, 30, 187, 189, 215, 256, 303, 524, 1598
BspHI	TCATGA	2 cut(s)	1110, 1927
BspLI	GGNNCC	7 cut(s)	225, 289, 498, 509, 1612, 2035, 2089
BspPI	GGATC	3 cut(s)	944, 2465, 2531
BspQI	GCTCTTC	1 cut(s)	53
BspT107I	GGYRCC	1 cut(s)	287
BsrBI	CCGCTC	1 cut(s)	273
BsrDI	GCAATG	3 cut(s)	987, 1253, 1393
BsrFI	RCCGGY	4 cut(s)	220, 284, 443, 499
BsrI	ACTGG	5 cut(s)	799, 822, 1461, 1614, 2285
BssAI	RCCGGY	4 cut(s)	220, 284, 443, 499
BssECI	CCNNGG	3 cut(s)	898, 1444, 1596
BssHII	GCGCGC	2 cut(s)	5, 254
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	2 cut(s)	898, 1444
Bst2UI	CCWGG	6 cut(s)	171, 505, 1287, 1638, 1707, 2442
Bst4CI	ACNGT	9 cut(s)	199, 569, 575, 675, 718, 1372, 1700, 1905, 2498
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	288
BstAPI	GCANNNNNTGC	2 cut(s)	854, 2317
BstBAI	YACGTR	1 cut(s)	457
BstC8I	GCNNGC	9 cut(s)	7, 222, 252, 256, 286, 501, 1283, 1715, 1866
BstDEI	CTNAG	6 cut(s)	10, 1848, 1916, 1941, 1962, 2361
BstDSI	CCRYGG	2 cut(s)	1444, 1596
BstEII	GGTNACC	1 cut(s)	2047
BstENI	CCTNNNNNAGG	4 cut(s)	918, 957, 1474, 2042
BstF5I	GGATG	5 cut(s)	565, 1246, 1536, 1762, 1900
BstFNI	CGCG	9 cut(s)	7, 30, 187, 189, 215, 256, 303, 524, 1598
BstH2I	RGCGCY	1 cut(s)	291
BstMAI	GTCTC	3 cut(s)	270, 974, 1944
BstMCI	CGRYCG	3 cut(s)	411, 930, 2463
BstNI	CCWGG	6 cut(s)	171, 505, 1287, 1638, 1707, 2442
BstNSI	RCATGY	3 cut(s)	1868, 2315, 2337
BstPI	GGTNACC	1 cut(s)	2047
BstSCI	CCNGG	7 cut(s)	169, 201, 503, 1285, 1636, 1705, 2440
BstSFI	CTRYAG	2 cut(s)	1401, 1491
BstSLI	GKGCMC	1 cut(s)	2534
BstUI	CGCG	9 cut(s)	7, 30, 187, 189, 215, 256, 303, 524, 1598
BstV1I	GCAGC	6 cut(s)	853, 869, 964, 1108, 1384, 2332
BstV2I	GAAGAC	3 cut(s)	364, 524, 1834
BstX2I	RGATCY	2 cut(s)	1027, 2470
BstXI	CCANNNNNNTGG	1 cut(s)	2141
BstYI	RGATCY	2 cut(s)	1027, 2470
BstZI	CGGCCG	1 cut(s)	927
BsuRI	GGCC	4 cut(s)	389, 503, 929, 2034
BtgI	CCRYGG	2 cut(s)	1444, 1596
BtgZI	GCGATG	1 cut(s)	421
BtsCI	GGATG	5 cut(s)	565, 1246, 1536, 1762, 1900
BtsI	GCAGTG	1 cut(s)	1094
BtsIMutI	CAGTG	7 cut(s)	574, 829, 1094, 1705, 1901, 1949, 2503
Cac8I	GCNNGC	9 cut(s)	7, 222, 252, 256, 286, 501, 1283, 1715, 1866
CaiI	CAGNNNCTG	1 cut(s)	805
CciI	TCATGA	2 cut(s)	1110, 1927
Cfr10I	RCCGGY	4 cut(s)	220, 284, 443, 499
Cfr13I	GGNCC	1 cut(s)	2033
Cfr42I	CCGCGG	1 cut(s)	1599
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	5 cut(s)	211, 1066, 1373, 2345, 2518
CspCI	CAANNNNNGTGG	2 cut(s)	1270, 1305
CviQI	GTAC	5 cut(s)	211, 1066, 1373, 2345, 2518
DdeI	CTNAG	6 cut(s)	10, 1848, 1916, 1941, 1962, 2361
DinI	GGCGCC	1 cut(s)	289
DraIII	CACNNNGTG	2 cut(s)	824, 1700
DriI	GACNNNNNGTC	1 cut(s)	1936
EaeI	YGGCCR	2 cut(s)	501, 927
EagI	CGGCCG	1 cut(s)	927
Eam1104I	CTCTTC	1 cut(s)	53
Eam1105I	GACNNNNNGTC	1 cut(s)	1936
EarI	CTCTTC	1 cut(s)	53
EciI	GGCGGA	3 cut(s)	86, 509, 1015
EclXI	CGGCCG	1 cut(s)	927
Eco130I	CCWWGG	2 cut(s)	898, 1444
Eco24I	GRGCYC	2 cut(s)	512, 2180
Eco32I	GATATC	3 cut(s)	707, 1668, 1912
Eco52I	CGGCCG	1 cut(s)	927
Eco57I	CTGAAG	1 cut(s)	1016
Eco72I	CACGTG	1 cut(s)	457
Eco88I	CYCGRG	2 cut(s)	1053, 1483
Eco91I	GGTNACC	1 cut(s)	2047
EcoNI	CCTNNNNNAGG	4 cut(s)	918, 957, 1474, 2042
EcoO65I	GGTNACC	1 cut(s)	2047
EcoRI	GAATTC	2 cut(s)	230, 879
EcoRII	CCWGG	6 cut(s)	169, 503, 1285, 1636, 1705, 2440
EcoRV	GATATC	3 cut(s)	707, 1668, 1912
EcoT14I	CCWWGG	2 cut(s)	898, 1444
EcoT38I	GRGCYC	2 cut(s)	512, 2180
EgeI	GGCGCC	1 cut(s)	289
EheI	GGCGCC	1 cut(s)	289
ErhI	CCWWGG	2 cut(s)	898, 1444
FalI	AAGNNNNNCTT	2 cut(s)	1782, 1814
FaqI	GGGAC	1 cut(s)	185
FauI	CCCGC	1 cut(s)	284
FauNDI	CATATG	1 cut(s)	1545
FbaI	TGATCA	2 cut(s)	1348, 2151
FblI	GTMKAC	2 cut(s)	1584, 1677
Fnu4HI	GCNGC	8 cut(s)	218, 441, 858, 867, 978, 1122, 1398, 2321
FokI	GGATG	5 cut(s)	572, 1253, 1543, 1749, 1907
FriOI	GRGCYC	2 cut(s)	512, 2180
Fsp4HI	GCNGC	8 cut(s)	218, 441, 858, 867, 978, 1122, 1398, 2321
FspBI	CTAG	4 cut(s)	731, 899, 1424, 1770
GluI	GCNGC	8 cut(s)	218, 441, 858, 867, 978, 1122, 1398, 2321
GsaI	CCCAGC	2 cut(s)	469, 977
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	4 cut(s)	389, 503, 929, 2034
HapII	CCGG	7 cut(s)	203, 221, 285, 357, 444, 500, 1892
HgaI	GACGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	288
HindIII	AAGCTT	1 cut(s)	1796
HinfI	GANTC	6 cut(s)	329, 345, 369, 403, 1411, 2447
HpaII	CCGG	7 cut(s)	203, 221, 285, 357, 444, 500, 1892
HphI	GGTGA	8 cut(s)	43, 94, 184, 914, 974, 2041, 2204, 2213
Hpy166II	GTNNAC	7 cut(s)	565, 827, 1439, 1585, 1678, 1901, 2204
Hpy188I	TCNGA	6 cut(s)	408, 711, 841, 1996, 2092, 2465
Hpy8I	GTNNAC	7 cut(s)	565, 827, 1439, 1585, 1678, 1901, 2204
Hpy99I	CGWCG	1 cut(s)	326
HpyCH4III	ACNGT	9 cut(s)	199, 569, 575, 675, 718, 1372, 1700, 1905, 2498
HpyCH4IV	ACGT	2 cut(s)	456, 1357
HpyF3I	CTNAG	6 cut(s)	10, 1848, 1916, 1941, 1962, 2361
HpySE526I	ACGT	2 cut(s)	456, 1357
Hsp92I	GRCGYC	1 cut(s)	288
KasI	GGCGCC	1 cut(s)	287
Kpn2I	TCCGGA	1 cut(s)	1891
KroI	GCCGGC	3 cut(s)	220, 284, 499
KroNI	GCCGGC	3 cut(s)	222, 286, 501
Ksp22I	TGATCA	2 cut(s)	1348, 2151
KspI	CCGCGG	1 cut(s)	1599
LguI	GCTCTTC	1 cut(s)	53
LmnI	GCTCC	8 cut(s)	19, 229, 278, 496, 507, 724, 1276, 2093
Lsp1109I	GCAGC	6 cut(s)	853, 869, 964, 1108, 1384, 2332
LweI	GCATC	2 cut(s)	1101, 2334
MaeI	CTAG	4 cut(s)	731, 899, 1424, 1770
MaeII	ACGT	2 cut(s)	456, 1357
MaeIII	GTNAC	6 cut(s)	181, 190, 569, 1834, 2047, 2094
MbiI	CCGCTC	1 cut(s)	273
MflI	RGATCY	2 cut(s)	1027, 2470
MhlI	GDGCHC	5 cut(s)	456, 462, 512, 2180, 2534
Mly113I	GGCGCC	1 cut(s)	288
MlyI	GAGTC	3 cut(s)	378, 412, 1405
MmeI	TCCRAC	4 cut(s)	431, 1222, 1887, 2526
MreI	CGCCGGCG	1 cut(s)	284
MroI	TCCGGA	1 cut(s)	1891
MroNI	GCCGGC	3 cut(s)	220, 284, 499
MroXI	GAANNNNTTC	1 cut(s)	344
MseI	TTAA	7 cut(s)	1176, 1503, 1656, 1755, 1818, 2289, 2387
MslI	CAYNNNNRTG	2 cut(s)	2229, 2355
MspA1I	CMGCKG	3 cut(s)	977, 1226, 1598
MspI	CCGG	7 cut(s)	203, 221, 285, 357, 444, 500, 1892
MspR9I	CCNGG	7 cut(s)	171, 203, 505, 1287, 1638, 1707, 2442
Mva1269I	GAATGC	2 cut(s)	800, 1727
MvaI	CCWGG	6 cut(s)	171, 505, 1287, 1638, 1707, 2442
MvnI	CGCG	9 cut(s)	7, 30, 187, 189, 215, 256, 303, 524, 1598
NaeI	GCCGGC	3 cut(s)	222, 286, 501
NarI	GGCGCC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	203
NcoI	CCATGG	1 cut(s)	1444
NdeI	CATATG	1 cut(s)	1545
NgoMIV	GCCGGC	3 cut(s)	220, 284, 499
NlaIV	GGNNCC	7 cut(s)	225, 289, 498, 509, 1612, 2035, 2089
NmeAIII	GCCGAG	3 cut(s)	441, 508, 905
NmuCI	GTSAC	4 cut(s)	181, 190, 569, 2047
NspI	RCATGY	3 cut(s)	1868, 2315, 2337
OliI	CACNNNNGTG	1 cut(s)	2229
PaeI	GCATGC	1 cut(s)	1868
PaeR7I	CTCGAG	1 cut(s)	1053
PagI	TCATGA	2 cut(s)	1110, 1927
PauI	GCGCGC	2 cut(s)	5, 254
PciSI	GCTCTTC	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	486
PctI	GAATGC	2 cut(s)	800, 1727
PdiI	GCCGGC	3 cut(s)	222, 286, 501
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	3 cut(s)	329, 345, 2447
PflFI	GACNNNGTC	1 cut(s)	2297
PflMI	CCANNNNNTGG	1 cut(s)	805
PkrI	GCNGC	8 cut(s)	219, 442, 859, 868, 979, 1123, 1399, 2322
Ple19I	CGATCG	1 cut(s)	2463
PleI	GAGTC	3 cut(s)	377, 411, 1405
PluTI	GGCGCC	1 cut(s)	291
PmaCI	CACGTG	1 cut(s)	457
PmlI	CACGTG	1 cut(s)	457
PpsI	GAGTC	3 cut(s)	377, 411, 1405
Ppu21I	YACGTR	1 cut(s)	457
PshBI	ATTAAT	1 cut(s)	1503
PsiI	TTATAA	2 cut(s)	1022, 1779
Psp6I	CCWGG	6 cut(s)	169, 503, 1285, 1636, 1705, 2440
PspCI	CACGTG	1 cut(s)	457
PspEI	GGTNACC	1 cut(s)	2047
PspFI	CCCAGC	2 cut(s)	465, 973
PspGI	CCWGG	6 cut(s)	169, 503, 1285, 1636, 1705, 2440
PspN4I	GGNNCC	7 cut(s)	225, 289, 498, 509, 1612, 2035, 2089
PspPI	GGNCC	1 cut(s)	2033
PsrI	GAACNNNNNNTAC	2 cut(s)	2196, 2228
PstNI	CAGNNNCTG	1 cut(s)	805
PsuI	RGATCY	2 cut(s)	1027, 2470
PsyI	GACNNNGTC	1 cut(s)	2297
PteI	GCGCGC	2 cut(s)	5, 254
PvuI	CGATCG	1 cut(s)	2463
PvuII	CAGCTG	2 cut(s)	977, 1226
RsaI	GTAC	5 cut(s)	212, 1067, 1374, 2346, 2519
RsaNI	GTAC	5 cut(s)	211, 1066, 1373, 2345, 2518
RseI	CAYNNNNRTG	2 cut(s)	2229, 2355
SacII	CCGCGG	1 cut(s)	1599
SapI	GCTCTTC	1 cut(s)	53
SaqAI	TTAA	7 cut(s)	1176, 1503, 1656, 1755, 1818, 2289, 2387
SatI	GCNGC	8 cut(s)	218, 441, 858, 867, 978, 1122, 1398, 2321
Sau96I	GGNCC	1 cut(s)	2033
SchI	GAGTC	3 cut(s)	378, 412, 1405
ScrFI	CCNGG	7 cut(s)	171, 203, 505, 1287, 1638, 1707, 2442
SduI	GDGCHC	5 cut(s)	456, 462, 512, 2180, 2534
SfaNI	GCATC	2 cut(s)	1101, 2334
SfcI	CTRYAG	2 cut(s)	1401, 1491
SfoI	GGCGCC	1 cut(s)	289
Sfr274I	CTCGAG	1 cut(s)	1053
Sfr303I	CCGCGG	1 cut(s)	1599
SgrAI	CRCCGGYG	1 cut(s)	284
SgrBI	CCGCGG	1 cut(s)	1599
SlaI	CTCGAG	1 cut(s)	1053
SmiMI	CAYNNNNRTG	2 cut(s)	2229, 2355
SmlI	CTYRAG	4 cut(s)	260, 861, 1053, 2179
SmoI	CTYRAG	4 cut(s)	260, 861, 1053, 2179
SphI	GCATGC	1 cut(s)	1868
SspDI	GGCGCC	1 cut(s)	287
SspI	AATATT	2 cut(s)	1738, 2539
SspMI	CTAG	4 cut(s)	731, 899, 1424, 1770
StyD4I	CCNGG	7 cut(s)	169, 201, 503, 1285, 1636, 1705, 2440
StyI	CCWWGG	2 cut(s)	898, 1444
TaaI	ACNGT	9 cut(s)	199, 569, 575, 675, 718, 1372, 1700, 1905, 2498
TaiI	ACGT	2 cut(s)	459, 1360
TaqI	TCGA	6 cut(s)	234, 246, 321, 1054, 1186, 2328
TaqII	GACCGA	1 cut(s)	425
TatI	WGTACW	2 cut(s)	1065, 2344
TauI	GCSGC	2 cut(s)	220, 443
TfiI	GAWTC	3 cut(s)	329, 345, 2447
Tru1I	TTAA	7 cut(s)	1176, 1503, 1656, 1755, 1818, 2289, 2387
Tru9I	TTAA	7 cut(s)	1176, 1503, 1656, 1755, 1818, 2289, 2387
TscAI	CASTG	7 cut(s)	574, 829, 1094, 1705, 1908, 1949, 2503
TseFI	GTSAC	4 cut(s)	181, 190, 569, 2047
TseI	GCWGC	6 cut(s)	857, 866, 977, 1121, 1397, 2320
Tsp45I	GTSAC	4 cut(s)	181, 190, 569, 2047
TspDTI	ATGAA	5 cut(s)	165, 636, 803, 1152, 2444
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	7 cut(s)	574, 829, 1094, 1705, 1908, 1949, 2503
Tth111I	GACNNNGTC	1 cut(s)	2297
Van91I	CCANNNNNTGG	1 cut(s)	805
VspI	ATTAAT	1 cut(s)	1503
XagI	CCTNNNNNAGG	4 cut(s)	918, 957, 1474, 2042
XapI	RAATTY	6 cut(s)	230, 655, 879, 906, 1990, 2284
XbaI	TCTAGA	1 cut(s)	1769
XceI	RCATGY	3 cut(s)	1868, 2315, 2337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1892
XhoI	CTCGAG	1 cut(s)	1053
XmaJI	CCTAGG	1 cut(s)	898
XmiI	GTMKAC	2 cut(s)	1584, 1677
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	4 cut(s)	731, 899, 1424, 1770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.