Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005831

Physical Location & Seq

Genomic Coordinates Forward (+)

7688050 .. 7694161

Gene Structure 6112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027016

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2631 bp

ATGGCGCGCTCAGCTCCAATTCTCAACCGCGACACCTCGCACTTGCTCTTTACCTTCAAACCTCCCCACTCTCCCTTCCACTCTCTCACTTCTCTCCGCCTCACCAAGCCTACTCTCCTCCCTACTTTTCTATCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGCCTGGTTCTTGTGTCACGCGCGTCACCACCGTCCCGGTAGAGTACGCGCCCCCGGCCCCCGAATTCGAGTTCCACAGCGAGCTCGCTCGCCTCAAGTCTCTCCGCTCCCGCCTCGCCGGCGCCAAATCGCTAGGCGCCAAAACCAGAGTGATCGACGGAGATTCCAGAGTGAAAAGATTCTTCAATTCCGGCAACAACCGAGTCTTCTCTGCGGTTTTGGCCTCGCTGGATTTGAGTCCGACCGAGTTGTTCTTGTTCAAGTGCCTCGTCGCCGCCGGCCAAGAGCACGTGCTCGGCTGGGGGTTTGAGTTCGCCGAGAGCGAGGCGGAGCCGGCCAGGAACCCCGTGAAGACCGCGTTTTACGCCATTGTTGAAATGATTGAGAAATTGGATGTGAACAGTGAGGGTTCGGGGAAGAAGAAGAAGGTTCGGTTTGCTTTGAATGATGAAGATTTTGAGGACTTGAAGAAGCTACTGAAGAATTTGGGAGAGGTTGAACAGTTCTATAACTGCATTGGAGGAGTGATTGGATATCAGATAACAGTAATGGAGCTTCTAGCGCAATCGAGAGTTGAAATGCAGACTACAAATTGGTATAACAACATACAAGAGCAGTTGGAATGCCAGTTTTTGGAAATTCATGCACCTAGTGGACTTGATCTTTCTGAAAATGCAGAATATGCAGCTCAAGCTGCTCTATGGGGAATTCAGGGTTTGCCAGACCTAGGTGAAATTTATCCTCTGGGAGGCTCCGCCGACAGGCTTGGTTTGGTTGATCCTGATACAGGTGAATGTCTTCCAGCTGCAATGCTTCCTTATTGTGGGCGGACTTTATTGGAAGGTCTTATAAGAGATCTTCAGGCTAGAGAGTTTTTGTACTTCAAGATTTATGGGAAGCAGTGCATCACTCCTGTTGCTATCATGACAAGTGCTGCAAAGAACAACCATGAACACATAACTTCTCTTTGTGAAAAACTTGAATGGTTTAAGAGAGGTCGATCAAGTTTCCAACTTTTTGAACAGCCCCTTGTTCCAGCTGTTAGTGCAGAGGATGGGCAATGGATAATCAAGAAACCTTTTGCTCCCATTTGCAAGCCTGGTGGTCATGGTGTGATATGGAAACTTGCTTATGATAAAGGCATTTTCCAATGGTTTTATGATCATGGACGTAAAGGTGCTACTGTACGACAAGTTAGCAATGTTGTGGCCGCTACAGATTTGACTCTCTTGGCACTAGCAGGGATTGGTTTACACCATGGGAAGAAACTGGGGTTTGCTTCCTGTAAGAGGAACTTGGGGGCTACAGAAGGAATTAATGTTCTAATGGAGAAGAAAAATCTGGATGGAAGGTGGGCATATGGTTTGTCTTGCATTGAATACACAGAGTTTGATAGATTTGGGATAGCAGATGGACCTCATTCTCGTAATAGTTTGCAGGCAGAGTTCCCTGCCAATACAAACATTTTGTATGTAGACTTACCTTCCGCGGAGTTGGTGGGTTCCAGTAAGAATACAGACAGCTTACCTGGCATGGTGTTAAATGTTAAAAAGGCGATATCATTTGTAGACAATTTTGGAAATCCACACAGTGTTCCTGGTGGCAGGCTTGAATGCACAATGCAAAATATTGCCGACAATTTTCTTAATACACATCCATCTAGAGATTATAAAGGCATTGAAGATAAGCTTGATACCTTTATTGTTTTTAATAAAAGAAGACGGGTTACATCATCTACTAAGAGGAAAAGAAGGCATGCAGACAAATCTTTACACCAAACTCCGGATGGTTCGCTGTTGGATATCCTAAGAAATGCTCATGACCTTCTGTCTCAGTGTGATATTCAACTTCCTGAGATTGGAAGTAATGACAAGTATCTAAATTCTGGACCACCATTTCTTATTCTTCTGCACCCTGCTCTTGGCCCCCTTTGGGAGGTCACCAGACAAAAGTTCTATGGAGGCTCAATATGCAAAGGCTCTGAGTTACAAGTAGAGGTCGCAGAGTTCCTGTGGAGGAATGTTCAGCTTGATGGAAGCCTGATCATAGAGGCTGATAATGTTATGGGCTCAAGTAGGGTTGGTGAAGATGGTGAACCTATTTTACAATATGGACACAGGTGTGGAAGGTGTAAATTACAGAATGTAAGAGTATTGAATGAGGGAATTGACTGGAATTTTGAAGACAATGTCTATTGGAAGCATGTTGTGCAGCGCATCCAAGCATGTAAGGTTGTACTGCATGGAAATGCTGAGTTTGAGGCAACTGATGTTATCTTAAAGGGAAATCATATATTTGAAGTTCCAAATGGCTACAAAATGAAGATCACGCCAGGAGATTCAGGTTTAGCGATCGGATTAGATCCTATCGCAGAGAATATGATGGACAGTGGAAGCTGGTGTTGGAAGTACGGGATCAAGGGCACAAATATTCAGTTGGAATTGGTAGAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006629 GO:0006725 GO:0006790 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009225 GO:0009226 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046505 GO:0046506 GO:0051748 GO:0055086 GO:0070569 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGP

Protein Analysis

877

Amino Acids

97.11

Weight (kDa)

6.47

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hexapep_UGP3_C	PF25441	710 - 873	2.1e-74	UGP3-like, C-terminal hexapeptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56040
fragaria_vesca	FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830
malus_domestica	MD01G1156200.v1.1 MD01G1156300.v1.1 MD07G1224900.v1.1
prunus_persica	Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1
pyrus_communis	pycom07g20360
rosa_chinensis	RchiOBHm_Chr1g0370701
rosa_laevigata	RLG00000027016
rosa_multiflora	Rmu_sc0004550.1_g000012
rosa_roxburghii	Rroxscaffold_4G00286290
rosa_rugosa	Rorug01G0358600
rosa_samantha	Rh1AG368300 Rh1BG331700 Rh1CG345700 Rh1DG363100
rosa_wichuraiana	Rw1G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1025, 1845
AccB1I	GGYRCC	2 cut(s)	296, 311
AccB7I	CCANNNNNTGG	1 cut(s)	808
AccBSI	CCGCTC	1 cut(s)	282
AccI	GTMKAC	2 cut(s)	1650, 1743
AccII	CGCG	7 cut(s)	7, 30, 196, 198, 224, 533, 1664
AccIII	TCCGGA	1 cut(s)	1957
AclWI	GGATC	3 cut(s)	947, 2531, 2597
AcoI	YGGCCR	3 cut(s)	454, 510, 1383
AcsI	RAATTY	7 cut(s)	239, 658, 813, 882, 909, 2056, 2350
AcuI	CTGAAG	2 cut(s)	674, 1019
AcvI	CACGTG	1 cut(s)	466
AcyI	GRCGYC	2 cut(s)	297, 312
AdeI	CACNNNGTG	2 cut(s)	827, 1766
AfaI	GTAC	5 cut(s)	221, 1055, 1362, 2412, 2585
AhdI	GACNNNNNGTC	1 cut(s)	2002
AjnI	CCWGG	6 cut(s)	178, 512, 1273, 1702, 1771, 2506
AjuI	GAANNNNNNNTTGG	2 cut(s)	2560, 2592
AleI	CACNNNNGTG	1 cut(s)	2295
AloI	GAACNNNNNNTCC	2 cut(s)	1479, 1511
Alw21I	GWGCWC	3 cut(s)	261, 465, 471
Alw26I	GTCTC	2 cut(s)	279, 2010
AlwI	GGATC	3 cut(s)	947, 2531, 2597
Aor13HI	TCCGGA	1 cut(s)	1957
AoxI	GGCC	6 cut(s)	231, 396, 454, 510, 1383, 2098
ApeKI	GCWGC	5 cut(s)	860, 869, 980, 1109, 2386
ApoI	RAATTY	7 cut(s)	239, 658, 813, 882, 909, 2056, 2350
ArsI	GACNNNNNNTTYG	2 cut(s)	2336, 2368
AseI	ATTAAT	1 cut(s)	1491
Asp700I	GAANNNNTTC	2 cut(s)	353, 972
AspA2I	CCTAGG	1 cut(s)	901
AspLEI	GCGC	8 cut(s)	7, 9, 198, 226, 299, 314, 739, 2391
AspS9I	GGNCC	4 cut(s)	232, 1589, 2063, 2099
AsuC2I	CCSGG	2 cut(s)	212, 230
AsuHPI	GGTGA	7 cut(s)	94, 193, 917, 977, 2107, 2270, 2279
AvaII	GGWCC	2 cut(s)	1589, 2063
AvrII	CCTAGG	1 cut(s)	901
BaeGI	GKGCMC	1 cut(s)	2600
BanI	GGYRCC	2 cut(s)	296, 311
BanII	GRGCYC	2 cut(s)	261, 2246
BarI	GAAGNNNNNNTAC	4 cut(s)	714, 746, 1885, 1917
BbrPI	CACGTG	1 cut(s)	466
BbsI	GAAGAC	5 cut(s)	373, 533, 965, 1900, 2364
Bbv12I	GWGCWC	3 cut(s)	261, 465, 471
BbvI	GCAGC	5 cut(s)	856, 872, 967, 1096, 2398
BccI	CCATC	8 cut(s)	1223, 1514, 1580, 1840, 1955, 2201, 2258, 2551
BciT130I	CCWGG	6 cut(s)	180, 514, 1275, 1704, 1773, 2508
BclI	TGATCA	2 cut(s)	1336, 2217
BcnI	CCSGG	2 cut(s)	212, 230
BcoDI	GTCTC	2 cut(s)	279, 2010
BfaI	CTAG	7 cut(s)	308, 734, 825, 902, 1041, 1412, 1836
BfmI	CTRYAG	2 cut(s)	1389, 1479
BfoI	RGCGCY	2 cut(s)	300, 315
BglI	GCCNNNNNGGC	1 cut(s)	294
BglII	AGATCT	1 cut(s)	1030
BisI	GCNGC	7 cut(s)	450, 861, 870, 981, 1110, 1386, 2387
BlnI	CCTAGG	1 cut(s)	901
BlpI	GCTNAGC	1 cut(s)	10
BlsI	GCNGC	7 cut(s)	451, 862, 871, 982, 1111, 1387, 2388
Bme1390I	CCNGG	8 cut(s)	180, 212, 230, 514, 1275, 1704, 1773, 2508
Bme18I	GGWCC	2 cut(s)	1589, 2063
BmeRI	GACNNNNNGTC	1 cut(s)	2002
BmgT120I	GGNCC	4 cut(s)	232, 1589, 2063, 2099
BmiI	GGNNCC	8 cut(s)	234, 298, 313, 507, 518, 928, 1678, 2101
BmrFI	CCNGG	8 cut(s)	180, 212, 230, 514, 1275, 1704, 1773, 2508
BmrI	ACTGGG	1 cut(s)	1454
BmsI	GCATC	2 cut(s)	1089, 2400
BmuI	ACTGGG	1 cut(s)	1454
BpiI	GAAGAC	5 cut(s)	373, 533, 965, 1900, 2364
Bpu1102I	GCTNAGC	1 cut(s)	10
BpuEI	CTTGAG	3 cut(s)	254, 849, 2230
BpuMI	CCSGG	2 cut(s)	212, 230
BsaAI	YACGTR	1 cut(s)	466
BsaHI	GRCGYC	2 cut(s)	297, 312
BsaJI	CCNNGG	4 cut(s)	228, 901, 1432, 1662
BsaWI	WCCGGW	1 cut(s)	1957
Bse118I	RCCGGY	3 cut(s)	293, 452, 508
Bse1I	ACTGG	4 cut(s)	802, 1449, 1680, 2351
Bse3DI	GCAATG	3 cut(s)	990, 1241, 1381
BseAI	TCCGGA	1 cut(s)	1957
BseBI	CCWGG	6 cut(s)	180, 514, 1275, 1704, 1773, 2508
BseDI	CCNNGG	4 cut(s)	228, 901, 1432, 1662
BseGI	GGATG	6 cut(s)	574, 1234, 1525, 1828, 1966, 2391
BseMI	GCAATG	3 cut(s)	990, 1241, 1381
BseMII	CTCAG	5 cut(s)	24, 2019, 2021, 2148, 2418
BseNI	ACTGG	4 cut(s)	802, 1449, 1680, 2351
BsePI	GCGCGC	1 cut(s)	5
BseRI	GAGGAG	2 cut(s)	107, 711
BseSI	GKGCMC	1 cut(s)	2600
BseXI	GCAGC	5 cut(s)	856, 872, 967, 1096, 2398
BseYI	CCCAGC	1 cut(s)	474
BsgI	GTGCAG	3 cut(s)	1242, 2069, 2405
Bsh1236I	CGCG	7 cut(s)	7, 30, 196, 198, 224, 533, 1664
Bsh1285I	CGRYCG	2 cut(s)	420, 2529
BshFI	GGCC	6 cut(s)	233, 398, 456, 512, 1385, 2100
BshNI	GGYRCC	2 cut(s)	296, 311
BsiEI	CGRYCG	2 cut(s)	420, 2529
BsiHKAI	GWGCWC	3 cut(s)	261, 465, 471
BsiSI	CCGG	7 cut(s)	212, 230, 294, 366, 453, 509, 1958
BslFI	GGGAC	1 cut(s)	194
BsmAI	GTCTC	2 cut(s)	279, 2010
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	2 cut(s)	803, 1793
BsnI	GGCC	6 cut(s)	233, 398, 456, 512, 1385, 2100
Bsp1286I	GDGCHC	5 cut(s)	261, 465, 471, 2246, 2600
Bsp13I	TCCGGA	1 cut(s)	1957
Bsp1720I	GCTNAGC	1 cut(s)	10
Bsp19I	CCATGG	1 cut(s)	1432
BspANI	GGCC	6 cut(s)	233, 398, 456, 512, 1385, 2100
BspCNI	CTCAG	5 cut(s)	23, 2020, 2020, 2149, 2419
BspEI	TCCGGA	1 cut(s)	1957
BspFNI	CGCG	7 cut(s)	7, 30, 196, 198, 224, 533, 1664
BspHI	TCATGA	2 cut(s)	1098, 1993
BspLI	GGNNCC	8 cut(s)	234, 298, 313, 507, 518, 928, 1678, 2101
BspPI	GGATC	3 cut(s)	947, 2531, 2597
BspT107I	GGYRCC	2 cut(s)	296, 311
BsrBI	CCGCTC	1 cut(s)	282
BsrDI	GCAATG	3 cut(s)	990, 1241, 1381
BsrFI	RCCGGY	3 cut(s)	293, 452, 508
BsrI	ACTGG	4 cut(s)	802, 1449, 1680, 2351
BssAI	RCCGGY	3 cut(s)	293, 452, 508
BssECI	CCNNGG	4 cut(s)	228, 901, 1432, 1662
BssHII	GCGCGC	1 cut(s)	5
BssNI	GRCGYC	2 cut(s)	297, 312
BssT1I	CCWWGG	2 cut(s)	901, 1432
Bst2UI	CCWGG	6 cut(s)	180, 514, 1275, 1704, 1773, 2508
Bst4CI	ACNGT	7 cut(s)	208, 578, 678, 721, 1360, 1766, 2564
Bst6I	CTCTTC	1 cut(s)	148
BstACI	GRCGYC	2 cut(s)	297, 312
BstAPI	GCANNNNNTGC	2 cut(s)	857, 2383
BstBAI	YACGTR	1 cut(s)	466
BstDEI	CTNAG	7 cut(s)	10, 1914, 1982, 2007, 2028, 2157, 2427
BstDSI	CCRYGG	2 cut(s)	1432, 1662
BstEII	GGTNACC	1 cut(s)	2113
BstENI	CCTNNNNNAGG	4 cut(s)	921, 960, 1462, 2108
BstF5I	GGATG	6 cut(s)	574, 1234, 1525, 1828, 1966, 2391
BstFNI	CGCG	7 cut(s)	7, 30, 196, 198, 224, 533, 1664
BstH2I	RGCGCY	2 cut(s)	300, 315
BstHHI	GCGC	8 cut(s)	7, 9, 198, 226, 299, 314, 739, 2391
BstMAI	GTCTC	2 cut(s)	279, 2010
BstMCI	CGRYCG	2 cut(s)	420, 2529
BstNI	CCWGG	6 cut(s)	180, 514, 1275, 1704, 1773, 2508
BstNSI	RCATGY	3 cut(s)	1934, 2381, 2403
BstPI	GGTNACC	1 cut(s)	2113
BstSCI	CCNGG	8 cut(s)	178, 210, 228, 512, 1273, 1702, 1771, 2506
BstSFI	CTRYAG	2 cut(s)	1389, 1479
BstSLI	GKGCMC	1 cut(s)	2600
BstUI	CGCG	7 cut(s)	7, 30, 196, 198, 224, 533, 1664
BstV1I	GCAGC	5 cut(s)	856, 872, 967, 1096, 2398
BstV2I	GAAGAC	5 cut(s)	373, 533, 965, 1900, 2364
BstX2I	RGATCY	2 cut(s)	1030, 2536
BstYI	RGATCY	2 cut(s)	1030, 2536
BsuRI	GGCC	6 cut(s)	233, 398, 456, 512, 1385, 2100
BtgI	CCRYGG	2 cut(s)	1432, 1662
BtsCI	GGATG	6 cut(s)	574, 1234, 1525, 1828, 1966, 2391
BtsI	GCAGTG	1 cut(s)	1082
BtsIMutI	CAGTG	5 cut(s)	583, 1082, 1771, 2015, 2569
CciI	TCATGA	2 cut(s)	1098, 1993
CfoI	GCGC	8 cut(s)	7, 9, 198, 226, 299, 314, 739, 2391
Cfr10I	RCCGGY	3 cut(s)	293, 452, 508
Cfr13I	GGNCC	4 cut(s)	232, 1589, 2063, 2099
Cfr42I	CCGCGG	1 cut(s)	1665
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	5 cut(s)	220, 1054, 1361, 2411, 2584
CspCI	CAANNNNNGTGG	2 cut(s)	1258, 1293
CviQI	GTAC	5 cut(s)	220, 1054, 1361, 2411, 2584
DdeI	CTNAG	7 cut(s)	10, 1914, 1982, 2007, 2028, 2157, 2427
DinI	GGCGCC	2 cut(s)	298, 313
DraIII	CACNNNGTG	2 cut(s)	827, 1766
DriI	GACNNNNNGTC	1 cut(s)	2002
EaeI	YGGCCR	3 cut(s)	454, 510, 1383
Eam1104I	CTCTTC	1 cut(s)	148
Eam1105I	GACNNNNNGTC	1 cut(s)	2002
EarI	CTCTTC	1 cut(s)	148
EciI	GGCGGA	4 cut(s)	86, 518, 919, 1018
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	2 cut(s)	901, 1432
Eco24I	GRGCYC	2 cut(s)	261, 2246
Eco32I	GATATC	3 cut(s)	710, 1734, 1978
Eco47I	GGWCC	2 cut(s)	1589, 2063
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	2 cut(s)	674, 1019
Eco72I	CACGTG	1 cut(s)	466
Eco91I	GGTNACC	1 cut(s)	2113
EcoICRI	GAGCTC	1 cut(s)	259
EcoNI	CCTNNNNNAGG	4 cut(s)	921, 960, 1462, 2108
EcoO65I	GGTNACC	1 cut(s)	2113
EcoRI	GAATTC	2 cut(s)	239, 882
EcoRII	CCWGG	6 cut(s)	178, 512, 1273, 1702, 1771, 2506
EcoRV	GATATC	3 cut(s)	710, 1734, 1978
EcoT14I	CCWWGG	2 cut(s)	901, 1432
EcoT38I	GRGCYC	2 cut(s)	261, 2246
EgeI	GGCGCC	2 cut(s)	298, 313
EheI	GGCGCC	2 cut(s)	298, 313
ErhI	CCWWGG	2 cut(s)	901, 1432
FalI	AAGNNNNNCTT	4 cut(s)	1454, 1486, 1848, 1880
FaqI	GGGAC	1 cut(s)	194
FauI	CCCGC	1 cut(s)	293
FauNDI	CATATG	1 cut(s)	1534
FbaI	TGATCA	2 cut(s)	1336, 2217
FblI	GTMKAC	2 cut(s)	1650, 1743
Fnu4HI	GCNGC	7 cut(s)	450, 861, 870, 981, 1110, 1386, 2387
FokI	GGATG	6 cut(s)	581, 1241, 1532, 1815, 1973, 2378
FriOI	GRGCYC	2 cut(s)	261, 2246
Fsp4HI	GCNGC	7 cut(s)	450, 861, 870, 981, 1110, 1386, 2387
FspBI	CTAG	7 cut(s)	308, 734, 825, 902, 1041, 1412, 1836
GlaI	GCGC	8 cut(s)	6, 8, 197, 225, 298, 313, 738, 2390
GluI	GCNGC	7 cut(s)	450, 861, 870, 981, 1110, 1386, 2387
GsaI	CCCAGC	1 cut(s)	478
HaeII	RGCGCY	2 cut(s)	300, 315
HaeIII	GGCC	6 cut(s)	233, 398, 456, 512, 1385, 2100
HapII	CCGG	7 cut(s)	212, 230, 294, 366, 453, 509, 1958
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	8 cut(s)	7, 9, 198, 226, 299, 314, 739, 2391
Hin1I	GRCGYC	2 cut(s)	297, 312
Hin6I	GCGC	8 cut(s)	5, 7, 196, 224, 297, 312, 737, 2389
HinP1I	GCGC	8 cut(s)	5, 7, 196, 224, 297, 312, 737, 2389
HindIII	AAGCTT	1 cut(s)	1862
HinfI	GANTC	6 cut(s)	338, 354, 378, 412, 1399, 2513
HpaII	CCGG	7 cut(s)	212, 230, 294, 366, 453, 509, 1958
HphI	GGTGA	7 cut(s)	94, 193, 917, 977, 2107, 2270, 2279
Hpy166II	GTNNAC	6 cut(s)	574, 830, 1427, 1651, 1744, 2270
Hpy188I	TCNGA	5 cut(s)	417, 714, 844, 2158, 2531
Hpy8I	GTNNAC	6 cut(s)	574, 830, 1427, 1651, 1744, 2270
Hpy99I	CGWCG	2 cut(s)	335, 449
HpyCH4III	ACNGT	7 cut(s)	208, 578, 678, 721, 1360, 1766, 2564
HpyCH4IV	ACGT	2 cut(s)	465, 1345
HpyF3I	CTNAG	7 cut(s)	10, 1914, 1982, 2007, 2028, 2157, 2427
HpySE526I	ACGT	2 cut(s)	465, 1345
Hsp92I	GRCGYC	2 cut(s)	297, 312
HspAI	GCGC	8 cut(s)	5, 7, 196, 224, 297, 312, 737, 2389
KasI	GGCGCC	2 cut(s)	296, 311
Kpn2I	TCCGGA	1 cut(s)	1957
KroI	GCCGGC	3 cut(s)	293, 452, 508
KroNI	GCCGGC	3 cut(s)	295, 454, 510
Ksp22I	TGATCA	2 cut(s)	1336, 2217
KspI	CCGCGG	1 cut(s)	1665
LmnI	GCTCC	6 cut(s)	19, 287, 505, 727, 932, 1264
Lsp1109I	GCAGC	5 cut(s)	856, 872, 967, 1096, 2398
LweI	GCATC	2 cut(s)	1089, 2400
MaeI	CTAG	7 cut(s)	308, 734, 825, 902, 1041, 1412, 1836
MaeII	ACGT	2 cut(s)	465, 1345
MaeIII	GTNAC	5 cut(s)	190, 199, 1900, 2113, 2160
MbiI	CCGCTC	1 cut(s)	282
MflI	RGATCY	2 cut(s)	1030, 2536
MhlI	GDGCHC	5 cut(s)	261, 465, 471, 2246, 2600
Mly113I	GGCGCC	2 cut(s)	297, 312
MlyI	GAGTC	3 cut(s)	387, 421, 1393
MmeI	TCCRAC	6 cut(s)	440, 774, 1210, 1953, 2558, 2592
MreI	CGCCGGCG	1 cut(s)	293
MroI	TCCGGA	1 cut(s)	1957
MroNI	GCCGGC	3 cut(s)	293, 452, 508
MroXI	GAANNNNTTC	2 cut(s)	353, 972
MseI	TTAA	7 cut(s)	1164, 1491, 1715, 1722, 1821, 1884, 2453
MslI	CAYNNNNRTG	2 cut(s)	2295, 2421
MspA1I	CMGCKG	3 cut(s)	980, 1214, 1664
MspI	CCGG	7 cut(s)	212, 230, 294, 366, 453, 509, 1958
MspR9I	CCNGG	8 cut(s)	180, 212, 230, 514, 1275, 1704, 1773, 2508
Mva1269I	GAATGC	2 cut(s)	803, 1793
MvaI	CCWGG	6 cut(s)	180, 514, 1275, 1704, 1773, 2508
MvnI	CGCG	7 cut(s)	7, 30, 196, 198, 224, 533, 1664
NaeI	GCCGGC	3 cut(s)	295, 454, 510
NarI	GGCGCC	2 cut(s)	297, 312
NciI	CCSGG	2 cut(s)	212, 230
NcoI	CCATGG	1 cut(s)	1432
NdeI	CATATG	1 cut(s)	1534
NgoMIV	GCCGGC	3 cut(s)	293, 452, 508
NlaIV	GGNNCC	8 cut(s)	234, 298, 313, 507, 518, 928, 1678, 2101
NmeAIII	GCCGAG	2 cut(s)	450, 517
NmuCI	GTSAC	3 cut(s)	190, 199, 2113
NspI	RCATGY	3 cut(s)	1934, 2381, 2403
OliI	CACNNNNGTG	1 cut(s)	2295
PaeI	GCATGC	1 cut(s)	1934
PagI	TCATGA	2 cut(s)	1098, 1993
PauI	GCGCGC	1 cut(s)	5
PcsI	WCGNNNNNNNCGW	1 cut(s)	495
PctI	GAATGC	2 cut(s)	803, 1793
PdiI	GCCGGC	3 cut(s)	295, 454, 510
PdmI	GAANNNNTTC	2 cut(s)	353, 972
PfeI	GAWTC	3 cut(s)	338, 354, 2513
PflFI	GACNNNGTC	1 cut(s)	2363
PflMI	CCANNNNNTGG	1 cut(s)	808
PkrI	GCNGC	7 cut(s)	451, 862, 871, 982, 1111, 1387, 2388
Ple19I	CGATCG	1 cut(s)	2529
PleI	GAGTC	3 cut(s)	386, 420, 1393
PluTI	GGCGCC	2 cut(s)	300, 315
PmaCI	CACGTG	1 cut(s)	466
PmlI	CACGTG	1 cut(s)	466
PpsI	GAGTC	3 cut(s)	386, 420, 1393
Ppu21I	YACGTR	1 cut(s)	466
PshBI	ATTAAT	1 cut(s)	1491
PsiI	TTATAA	2 cut(s)	1025, 1845
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	6 cut(s)	178, 512, 1273, 1702, 1771, 2506
PspCI	CACGTG	1 cut(s)	466
PspEI	GGTNACC	1 cut(s)	2113
PspFI	CCCAGC	1 cut(s)	474
PspGI	CCWGG	6 cut(s)	178, 512, 1273, 1702, 1771, 2506
PspN4I	GGNNCC	8 cut(s)	234, 298, 313, 507, 518, 928, 1678, 2101
PspPI	GGNCC	4 cut(s)	232, 1589, 2063, 2099
PsrI	GAACNNNNNNTAC	2 cut(s)	2262, 2294
PsuI	RGATCY	2 cut(s)	1030, 2536
PsyI	GACNNNGTC	1 cut(s)	2363
PteI	GCGCGC	1 cut(s)	5
PvuI	CGATCG	1 cut(s)	2529
PvuII	CAGCTG	2 cut(s)	980, 1214
RsaI	GTAC	5 cut(s)	221, 1055, 1362, 2412, 2585
RsaNI	GTAC	5 cut(s)	220, 1054, 1361, 2411, 2584
RseI	CAYNNNNRTG	2 cut(s)	2295, 2421
SacI	GAGCTC	1 cut(s)	261
SacII	CCGCGG	1 cut(s)	1665
SaqAI	TTAA	7 cut(s)	1164, 1491, 1715, 1722, 1821, 1884, 2453
SatI	GCNGC	7 cut(s)	450, 861, 870, 981, 1110, 1386, 2387
Sau96I	GGNCC	4 cut(s)	232, 1589, 2063, 2099
SchI	GAGTC	3 cut(s)	387, 421, 1393
ScrFI	CCNGG	8 cut(s)	180, 212, 230, 514, 1275, 1704, 1773, 2508
SduI	GDGCHC	5 cut(s)	261, 465, 471, 2246, 2600
SfaNI	GCATC	2 cut(s)	1089, 2400
SfcI	CTRYAG	2 cut(s)	1389, 1479
SfoI	GGCGCC	2 cut(s)	298, 313
Sfr303I	CCGCGG	1 cut(s)	1665
SgrAI	CRCCGGYG	1 cut(s)	293
SgrBI	CCGCGG	1 cut(s)	1665
SinI	GGWCC	2 cut(s)	1589, 2063
SmiMI	CAYNNNNRTG	2 cut(s)	2295, 2421
SmlI	CTYRAG	3 cut(s)	269, 864, 2245
SmoI	CTYRAG	3 cut(s)	269, 864, 2245
SphI	GCATGC	1 cut(s)	1934
SspDI	GGCGCC	2 cut(s)	296, 311
SspI	AATATT	2 cut(s)	1804, 2605
SspMI	CTAG	7 cut(s)	308, 734, 825, 902, 1041, 1412, 1836
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	8 cut(s)	178, 210, 228, 512, 1273, 1702, 1771, 2506
StyI	CCWWGG	2 cut(s)	901, 1432
TaaI	ACNGT	7 cut(s)	208, 578, 678, 721, 1360, 1766, 2564
TaiI	ACGT	2 cut(s)	468, 1348
TaqI	TCGA	4 cut(s)	243, 330, 743, 1174
TaqII	GACCGA	1 cut(s)	434
TatI	WGTACW	2 cut(s)	1053, 2410
TauI	GCSGC	2 cut(s)	452, 1388
TfiI	GAWTC	3 cut(s)	338, 354, 2513
Tru1I	TTAA	7 cut(s)	1164, 1491, 1715, 1722, 1821, 1884, 2453
Tru9I	TTAA	7 cut(s)	1164, 1491, 1715, 1722, 1821, 1884, 2453
TscAI	CASTG	5 cut(s)	583, 1082, 1771, 2015, 2569
TseFI	GTSAC	3 cut(s)	190, 199, 2113
TseI	GCWGC	5 cut(s)	860, 869, 980, 1109, 2386
Tsp45I	GTSAC	3 cut(s)	190, 199, 2113
TspDTI	ATGAA	4 cut(s)	639, 806, 1140, 2510
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	5 cut(s)	583, 1082, 1771, 2015, 2569
Tth111I	GACNNNGTC	1 cut(s)	2363
Van91I	CCANNNNNTGG	1 cut(s)	808
VpaK11BI	GGWCC	2 cut(s)	1589, 2063
VspI	ATTAAT	1 cut(s)	1491
XagI	CCTNNNNNAGG	4 cut(s)	921, 960, 1462, 2108
XapI	RAATTY	7 cut(s)	239, 658, 813, 882, 909, 2056, 2350
XbaI	TCTAGA	1 cut(s)	1835
XceI	RCATGY	3 cut(s)	1934, 2381, 2403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1958
XmaJI	CCTAGG	1 cut(s)	901
XmiI	GTMKAC	2 cut(s)	1650, 1743
XmnI	GAANNNNTTC	2 cut(s)	353, 972
XspI	CTAG	7 cut(s)	308, 734, 825, 902, 1041, 1412, 1836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.