Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005831

Physical Location & Seq

Genomic Coordinates Reverse (-)

60254461 .. 60260205

Gene Structure 5745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG368300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2352 bp

ATGGCGCGCTCAGCTCCAATTCTCAACCGCGACACCTCGCACCTGCTCTTCACCTTCAAACCTCCCCACTCTCCCTTCCACTCTCTCACTTCTCTCCGCCTCACCAAGCCTACTCTCCTCCCTACTCTTTTATCTTCTTCTTCTTCGCCTGATTCTTGTGTCACGCGCGTCACCACCGTCCCGGTAGAGTACGCGCCGCCGGCTCCCGAATTCGAGTTCGACAGCGAGCTCGCGCGCCTCAAGTCTCTCCGCTCCCGCGTCGCCGGCGCCAAATCGCTACGCGCCAAAACCAGAGTGATCGACGGAGATTCCAGAGTGAAAAGATTCTTCAATTCCGGCAACAACCGAGTCTTCTCTGCGGTTTTGGCCTCGCTGGATTTGAGTCCGACCGAGTCGTTTTTGTTCAAGTGCCTCGTCGCCGCCGGCCAAGAGCACGTGCTCGGCTGGGGGTTTGAGTTCGCCGAGAGCGAGGCGGAGCCGGCCAGGAGCCCCGTGAAGACCGCGTTTTACGCCATTGTAGAAATGATTGAGAAATTGGATGTGAACAGTGACGGTTCGGGGAAGAAGAAGAAGAAGAAGGTTCGGTTTGCTTTGAATGATGAAGATTTTGAGGACTTGAAGAAGCTATTGAAGAATTTGGGAGAGGTTGAACAGTTCTATAACTGCATTGGAGGAGTGATTGGATATCAGATAACAGTAATGGAGCTTCTAGCGCAATCGAGAGTTGAAATGCAGACTACAAATTGGTATGACAACATACAAGAGCAGATGGAATGCCAGTTTTTGGAAATTCATGCACCTAGTGGACTTGATCTTTCTGAAAATGCAGAATATGCAGCTCAAGCTGCTCTATGGGGAATTCAGGGTTTGCCAGACCTAGGTGAAATTTATCCTCTGGGAGGCTCCGCCGATAGGCTTGGTTTGGTTGATCCTGATACAGGTGAATGTCTCCCAGCTGCAATGCTTCCGTATTGTGGGCGGACTTTATTGGAAGGTCTTATAAGAGATCTTCAGGCTAGAGAGTTTTTGTACTTCAAGATTTTTGGGAAGCAGTGCATCACTCCTGTTGCTATCATGACAAGTGCTGCAAAGAACAACCATGAACACATAACTTCTCTTTGTGAAAAACTTGAATGGTTTAAGAGAGGTCGATCAAGTTTCCAACTTTTCGAACAGCCCCTTGTTCCAGCTGTTAGTGCAGAGGATGGGCAATGGATAATCAAGAAACCTTTTGCTCCCATTTGCAAGCCTGGTGGTCATGGTGTGATATGGAAACTTGCTTATGATAAAGGCATTTTCCAATGGTTTTATGATCATGGACGTAAAGGTGCAACTGTACGACAAGTTAGCAATGTTGTGGCCGCTACAGATTTGACTCTCTTGGCACTAGCAGGGATTGGTTTACACCATGGGAAGAAACTGGGGTTTGCTTCCTGTAAGAGGAACTTGGGGGCTACAGAAGGAATTAATGTTCTAATGGAGAAGAAAAATCTGGATGGAAGGTGGGCATATGGTTTGTCTTGCATTGAATACACAGAGTTTGATAAATTTGGGATAGCAGATGGACCTCATTCTCGTAATAGGTTGCAGGCAGAGTTCCCTGCCAATACAAACATTTTGTATGTAGACTTACCTTCCGCGGAGTTGGTGGGTTCCAGTAAGAATACAGACAGCTTACCTGGCATGGTGTTAAATGTTAAAAAGGCGATATCATTTGTAGACAATTTTGGAAATCCACACAGTGTTCCTGGTGGCAGGCTTGAATGCACGATGCAAAATATTGCCGACAATTTTCTTAATACACATCCATCTAGAGATTATAAAGGCATTGAAGATAAGCTTGATACCTTTATTGTTTTTAATAAAAGAAGACGGGTTACATCATCTACTAAGAGGAAAAGAAGGCATGCAGACAAATCTTTACACCAAACTCCGGATGGTTCACTGTTGGATATCCTAAGAAATGCTCATGACCTTCTGTCTCAGTGTGATATTGAACTTCCTGAGATTGGAAGTAATGACAAGTATCTAAATTCTGGACCACCATTTCTTATTCTTCTGCACCCTGCTCTTGGCCCCCTTTGGGAGGTCACCAGACAAAAGTTCTGTGGAGGCTCAATATGCAAAGGCTCTGAGTTACAAGTAGAGGTCGCAGAGTTCCTGTGGAGGAATGTTCAGGGAAATCATATATTTGAAGTTCCAAATGGCTACAAAATGAAGATCACGCCAGGAGATTCAGGTTTAGCGATCGGATTAGATCCTATCGCAGAGAATATGATGGACAGTGGAAGCTGGTATTGGAAGTACGGGATCAAGGGCACAAATATTCAGTTGGAATTGGTAGAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006629 GO:0006725 GO:0006790 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009225 GO:0009226 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046505 GO:0046506 GO:0051748 GO:0055086 GO:0070569 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGP

Protein Analysis

783

Amino Acids

86.97

Weight (kDa)

6.84

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hexapep_UGP3_C	PF25441	726 - 780	2.6e-14	UGP3-like, C-terminal hexapeptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56040
fragaria_vesca	FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830
malus_domestica	MD01G1156200.v1.1 MD01G1156300.v1.1 MD07G1224900.v1.1
prunus_persica	Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1
pyrus_communis	pycom07g20360
rosa_chinensis	RchiOBHm_Chr1g0370701
rosa_laevigata	RLG00000027016
rosa_multiflora	Rmu_sc0004550.1_g000012
rosa_roxburghii	Rroxscaffold_4G00286290
rosa_rugosa	Rorug01G0358600
rosa_samantha	Rh1AG368300 Rh1BG331700 Rh1CG345700 Rh1DG363100
rosa_wichuraiana	Rw1G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1001, 1821
AarI	CACCTGC	1 cut(s)	51
Acc36I	ACCTGC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	266
AccB7I	CCANNNNNTGG	1 cut(s)	784
AccBSI	CCGCTC	1 cut(s)	252
AccI	GTMKAC	2 cut(s)	1626, 1719
AccIII	TCCGGA	1 cut(s)	1933
AclWI	GGATC	3 cut(s)	923, 2252, 2318
AcoI	YGGCCR	3 cut(s)	424, 480, 1359
AcsI	RAATTY	7 cut(s)	209, 634, 789, 858, 885, 1547, 2032
AcuI	CTGAAG	1 cut(s)	995
AcvI	CACGTG	1 cut(s)	436
AcyI	GRCGYC	1 cut(s)	267
AdeI	CACNNNGTG	2 cut(s)	803, 1742
AfaI	GTAC	4 cut(s)	191, 1031, 1338, 2306
AhdI	GACNNNNNGTC	1 cut(s)	1978
AjnI	CCWGG	5 cut(s)	482, 1249, 1678, 1747, 2227
AjuI	GAANNNNNNNTTGG	2 cut(s)	2281, 2313
AloI	GAACNNNNNNTCC	2 cut(s)	1455, 1487
Alw21I	GWGCWC	3 cut(s)	231, 435, 441
Alw26I	GTCTC	3 cut(s)	249, 953, 1986
AlwI	GGATC	3 cut(s)	923, 2252, 2318
Aor13HI	TCCGGA	1 cut(s)	1933
AoxI	GGCC	5 cut(s)	366, 424, 480, 1359, 2074
ApeKI	GCWGC	4 cut(s)	836, 845, 956, 1085
ApoI	RAATTY	7 cut(s)	209, 634, 789, 858, 885, 1547, 2032
AseI	ATTAAT	1 cut(s)	1467
Asp700I	GAANNNNTTC	1 cut(s)	323
AspA2I	CCTAGG	1 cut(s)	877
AspLEI	GCGC	9 cut(s)	7, 9, 168, 196, 235, 237, 269, 284, 715
AspS9I	GGNCC	3 cut(s)	1565, 2039, 2075
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	6 cut(s)	43, 94, 163, 893, 953, 2083
AsuII	TTCGAA	1 cut(s)	1170
AvaII	GGWCC	2 cut(s)	1565, 2039
AvrII	CCTAGG	1 cut(s)	877
BaeGI	GKGCMC	1 cut(s)	2321
BanI	GGYRCC	1 cut(s)	266
BanII	GRGCYC	2 cut(s)	231, 491
BarI	GAAGNNNNNNTAC	4 cut(s)	690, 722, 1861, 1893
BbrPI	CACGTG	1 cut(s)	436
BbsI	GAAGAC	3 cut(s)	343, 503, 1876
Bbv12I	GWGCWC	3 cut(s)	231, 435, 441
BbvI	GCAGC	4 cut(s)	832, 848, 943, 1072
BccI	CCATC	7 cut(s)	763, 1199, 1490, 1556, 1816, 1931, 2272
BciT130I	CCWGG	5 cut(s)	484, 1251, 1680, 1749, 2229
BclI	TGATCA	1 cut(s)	1312
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	3 cut(s)	249, 953, 1986
BfaI	CTAG	6 cut(s)	710, 801, 878, 1017, 1388, 1812
BfmI	CTRYAG	2 cut(s)	1365, 1455
BfoI	RGCGCY	1 cut(s)	270
BfuAI	ACCTGC	1 cut(s)	51
BglII	AGATCT	1 cut(s)	1006
BisI	GCNGC	7 cut(s)	197, 420, 837, 846, 957, 1086, 1362
BlnI	CCTAGG	1 cut(s)	877
BlpI	GCTNAGC	1 cut(s)	10
BlsI	GCNGC	7 cut(s)	198, 421, 838, 847, 958, 1087, 1363
Bme1390I	CCNGG	6 cut(s)	182, 484, 1251, 1680, 1749, 2229
Bme18I	GGWCC	2 cut(s)	1565, 2039
BmeRI	GACNNNNNGTC	1 cut(s)	1978
BmgT120I	GGNCC	3 cut(s)	1565, 2039, 2075
BmiI	GGNNCC	7 cut(s)	204, 268, 477, 488, 904, 1654, 2077
BmrFI	CCNGG	6 cut(s)	182, 484, 1251, 1680, 1749, 2229
BmrI	ACTGGG	1 cut(s)	1430
BmsI	GCATC	2 cut(s)	1065, 1761
BmuI	ACTGGG	1 cut(s)	1430
BpiI	GAAGAC	3 cut(s)	343, 503, 1876
Bpu1102I	GCTNAGC	1 cut(s)	10
Bpu14I	TTCGAA	1 cut(s)	1170
BpuEI	CTTGAG	2 cut(s)	224, 825
BpuMI	CCSGG	1 cut(s)	182
BsaAI	YACGTR	1 cut(s)	436
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	877, 1408, 1638
BsaWI	WCCGGW	1 cut(s)	1933
Bse118I	RCCGGY	4 cut(s)	199, 263, 422, 478
Bse1I	ACTGG	3 cut(s)	778, 1425, 1656
Bse3DI	GCAATG	3 cut(s)	966, 1217, 1357
BseAI	TCCGGA	1 cut(s)	1933
BseBI	CCWGG	5 cut(s)	484, 1251, 1680, 1749, 2229
BseDI	CCNNGG	3 cut(s)	877, 1408, 1638
BseGI	GGATG	5 cut(s)	544, 1210, 1501, 1804, 1942
BseMI	GCAATG	3 cut(s)	966, 1217, 1357
BseMII	CTCAG	4 cut(s)	24, 1995, 1997, 2124
BseNI	ACTGG	3 cut(s)	778, 1425, 1656
BsePI	GCGCGC	2 cut(s)	5, 233
BseRI	GAGGAG	2 cut(s)	107, 687
BseSI	GKGCMC	1 cut(s)	2321
BseXI	GCAGC	4 cut(s)	832, 848, 943, 1072
BseYI	CCCAGC	2 cut(s)	444, 952
BsgI	GTGCAG	2 cut(s)	1218, 2045
Bsh1285I	CGRYCG	2 cut(s)	390, 2250
BshFI	GGCC	5 cut(s)	368, 426, 482, 1361, 2076
BshNI	GGYRCC	1 cut(s)	266
BsiEI	CGRYCG	2 cut(s)	390, 2250
BsiHKAI	GWGCWC	3 cut(s)	231, 435, 441
BsiSI	CCGG	7 cut(s)	182, 200, 264, 336, 423, 479, 1934
BslFI	GGGAC	1 cut(s)	164
BsmAI	GTCTC	3 cut(s)	249, 953, 1986
BsmFI	GGGAC	1 cut(s)	164
BsmI	GAATGC	2 cut(s)	779, 1769
BsnI	GGCC	5 cut(s)	368, 426, 482, 1361, 2076
Bsp119I	TTCGAA	1 cut(s)	1170
Bsp1286I	GDGCHC	5 cut(s)	231, 435, 441, 491, 2321
Bsp13I	TCCGGA	1 cut(s)	1933
Bsp1720I	GCTNAGC	1 cut(s)	10
Bsp19I	CCATGG	1 cut(s)	1408
BspANI	GGCC	5 cut(s)	368, 426, 482, 1361, 2076
BspCNI	CTCAG	4 cut(s)	23, 1996, 1996, 2125
BspEI	TCCGGA	1 cut(s)	1933
BspHI	TCATGA	2 cut(s)	1074, 1969
BspLI	GGNNCC	7 cut(s)	204, 268, 477, 488, 904, 1654, 2077
BspMI	ACCTGC	1 cut(s)	51
BspPI	GGATC	3 cut(s)	923, 2252, 2318
BspQI	GCTCTTC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	1170
BspT107I	GGYRCC	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	252
BsrDI	GCAATG	3 cut(s)	966, 1217, 1357
BsrFI	RCCGGY	4 cut(s)	199, 263, 422, 478
BsrI	ACTGG	3 cut(s)	778, 1425, 1656
BssAI	RCCGGY	4 cut(s)	199, 263, 422, 478
BssECI	CCNNGG	3 cut(s)	877, 1408, 1638
BssHII	GCGCGC	2 cut(s)	5, 233
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	2 cut(s)	877, 1408
Bst2UI	CCWGG	5 cut(s)	484, 1251, 1680, 1749, 2229
Bst4CI	ACNGT	9 cut(s)	178, 548, 554, 654, 697, 1336, 1742, 1947, 2285
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	833
BstBAI	YACGTR	1 cut(s)	436
BstBI	TTCGAA	1 cut(s)	1170
BstDEI	CTNAG	6 cut(s)	10, 1890, 1958, 1983, 2004, 2133
BstDSI	CCRYGG	2 cut(s)	1408, 1638
BstEII	GGTNACC	1 cut(s)	2089
BstENI	CCTNNNNNAGG	4 cut(s)	897, 936, 1438, 2084
BstF5I	GGATG	5 cut(s)	544, 1210, 1501, 1804, 1942
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	9 cut(s)	7, 9, 168, 196, 235, 237, 269, 284, 715
BstMAI	GTCTC	3 cut(s)	249, 953, 1986
BstMCI	CGRYCG	2 cut(s)	390, 2250
BstNI	CCWGG	5 cut(s)	484, 1251, 1680, 1749, 2229
BstNSI	RCATGY	1 cut(s)	1910
BstPI	GGTNACC	1 cut(s)	2089
BstSCI	CCNGG	6 cut(s)	180, 482, 1249, 1678, 1747, 2227
BstSFI	CTRYAG	2 cut(s)	1365, 1455
BstSLI	GKGCMC	1 cut(s)	2321
BstV1I	GCAGC	4 cut(s)	832, 848, 943, 1072
BstV2I	GAAGAC	3 cut(s)	343, 503, 1876
BstX2I	RGATCY	2 cut(s)	1006, 2257
BstYI	RGATCY	2 cut(s)	1006, 2257
BsuRI	GGCC	5 cut(s)	368, 426, 482, 1361, 2076
BtgI	CCRYGG	2 cut(s)	1408, 1638
BtsCI	GGATG	5 cut(s)	544, 1210, 1501, 1804, 1942
BtsI	GCAGTG	1 cut(s)	1058
BtsIMutI	CAGTG	6 cut(s)	553, 1058, 1747, 1943, 1991, 2290
BveI	ACCTGC	1 cut(s)	51
CciI	TCATGA	2 cut(s)	1074, 1969
CfoI	GCGC	9 cut(s)	7, 9, 168, 196, 235, 237, 269, 284, 715
Cfr10I	RCCGGY	4 cut(s)	199, 263, 422, 478
Cfr13I	GGNCC	3 cut(s)	1565, 2039, 2075
Cfr42I	CCGCGG	1 cut(s)	1641
CseI	GACGC	2 cut(s)	157, 247
Csp6I	GTAC	4 cut(s)	190, 1030, 1337, 2305
CspCI	CAANNNNNGTGG	2 cut(s)	1234, 1269
CviAII	CATG	9 cut(s)	794, 1075, 1100, 1259, 1316, 1409, 1684, 1907, 1970
CviQI	GTAC	4 cut(s)	190, 1030, 1337, 2305
DdeI	CTNAG	6 cut(s)	10, 1890, 1958, 1983, 2004, 2133
DinI	GGCGCC	1 cut(s)	268
DraIII	CACNNNGTG	2 cut(s)	803, 1742
DriI	GACNNNNNGTC	1 cut(s)	1978
EaeI	YGGCCR	3 cut(s)	424, 480, 1359
Eam1104I	CTCTTC	1 cut(s)	53
Eam1105I	GACNNNNNGTC	1 cut(s)	1978
EarI	CTCTTC	1 cut(s)	53
EciI	GGCGGA	4 cut(s)	86, 488, 895, 994
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	2 cut(s)	877, 1408
Eco24I	GRGCYC	2 cut(s)	231, 491
Eco32I	GATATC	3 cut(s)	686, 1710, 1954
Eco47I	GGWCC	2 cut(s)	1565, 2039
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	995
Eco72I	CACGTG	1 cut(s)	436
Eco91I	GGTNACC	1 cut(s)	2089
EcoICRI	GAGCTC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	4 cut(s)	897, 936, 1438, 2084
EcoO65I	GGTNACC	1 cut(s)	2089
EcoRI	GAATTC	2 cut(s)	209, 858
EcoRII	CCWGG	5 cut(s)	482, 1249, 1678, 1747, 2227
EcoRV	GATATC	3 cut(s)	686, 1710, 1954
EcoT14I	CCWWGG	2 cut(s)	877, 1408
EcoT38I	GRGCYC	2 cut(s)	231, 491
EgeI	GGCGCC	1 cut(s)	268
EheI	GGCGCC	1 cut(s)	268
ErhI	CCWWGG	2 cut(s)	877, 1408
FaeI	CATG	9 cut(s)	797, 1078, 1103, 1262, 1319, 1412, 1687, 1910, 1973
FalI	AAGNNNNNCTT	4 cut(s)	1430, 1462, 1824, 1856
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	9 cut(s)	793, 1074, 1099, 1258, 1315, 1408, 1683, 1906, 1969
FauI	CCCGC	1 cut(s)	263
FauNDI	CATATG	1 cut(s)	1510
FbaI	TGATCA	1 cut(s)	1312
FblI	GTMKAC	2 cut(s)	1626, 1719
Fnu4HI	GCNGC	7 cut(s)	197, 420, 837, 846, 957, 1086, 1362
FokI	GGATG	5 cut(s)	551, 1217, 1508, 1791, 1949
FriOI	GRGCYC	2 cut(s)	231, 491
Fsp4HI	GCNGC	7 cut(s)	197, 420, 837, 846, 957, 1086, 1362
FspBI	CTAG	6 cut(s)	710, 801, 878, 1017, 1388, 1812
GlaI	GCGC	9 cut(s)	6, 8, 167, 195, 234, 236, 268, 283, 714
GluI	GCNGC	7 cut(s)	197, 420, 837, 846, 957, 1086, 1362
GsaI	CCCAGC	2 cut(s)	448, 956
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	5 cut(s)	368, 426, 482, 1361, 2076
HapII	CCGG	7 cut(s)	182, 200, 264, 336, 423, 479, 1934
HgaI	GACGC	2 cut(s)	157, 247
HhaI	GCGC	9 cut(s)	7, 9, 168, 196, 235, 237, 269, 284, 715
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	9 cut(s)	797, 1078, 1103, 1262, 1319, 1412, 1687, 1910, 1973
Hin6I	GCGC	9 cut(s)	5, 7, 166, 194, 233, 235, 267, 282, 713
HinP1I	GCGC	9 cut(s)	5, 7, 166, 194, 233, 235, 267, 282, 713
HindIII	AAGCTT	1 cut(s)	1838
HinfI	GANTC	8 cut(s)	152, 308, 324, 348, 382, 392, 1375, 2234
HpaII	CCGG	7 cut(s)	182, 200, 264, 336, 423, 479, 1934
HphI	GGTGA	6 cut(s)	43, 94, 163, 893, 953, 2083
Hpy166II	GTNNAC	6 cut(s)	544, 806, 1403, 1627, 1720, 1943
Hpy188I	TCNGA	5 cut(s)	387, 690, 820, 2134, 2252
Hpy8I	GTNNAC	6 cut(s)	544, 806, 1403, 1627, 1720, 1943
Hpy99I	CGWCG	3 cut(s)	263, 305, 419
HpyAV	CCTTC	9 cut(s)	64, 85, 571, 986, 1454, 1494, 1644, 1896, 1985
HpyCH4III	ACNGT	9 cut(s)	178, 548, 554, 654, 697, 1336, 1742, 1947, 2285
HpyCH4IV	ACGT	2 cut(s)	435, 1321
HpyF3I	CTNAG	6 cut(s)	10, 1890, 1958, 1983, 2004, 2133
HpySE526I	ACGT	2 cut(s)	435, 1321
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	9 cut(s)	797, 1078, 1103, 1262, 1319, 1412, 1687, 1910, 1973
HspAI	GCGC	9 cut(s)	5, 7, 166, 194, 233, 235, 267, 282, 713
KasI	GGCGCC	1 cut(s)	266
Kpn2I	TCCGGA	1 cut(s)	1933
KroI	GCCGGC	4 cut(s)	199, 263, 422, 478
KroNI	GCCGGC	4 cut(s)	201, 265, 424, 480
Ksp22I	TGATCA	1 cut(s)	1312
KspI	CCGCGG	1 cut(s)	1641
LguI	GCTCTTC	1 cut(s)	53
LmnI	GCTCC	8 cut(s)	19, 208, 257, 475, 486, 703, 908, 1240
Lsp1109I	GCAGC	4 cut(s)	832, 848, 943, 1072
LweI	GCATC	2 cut(s)	1065, 1761
MaeI	CTAG	6 cut(s)	710, 801, 878, 1017, 1388, 1812
MaeII	ACGT	2 cut(s)	435, 1321
MaeIII	GTNAC	6 cut(s)	160, 169, 548, 1876, 2089, 2136
MbiI	CCGCTC	1 cut(s)	252
MflI	RGATCY	2 cut(s)	1006, 2257
MhlI	GDGCHC	5 cut(s)	231, 435, 441, 491, 2321
Mly113I	GGCGCC	1 cut(s)	267
MlyI	GAGTC	4 cut(s)	357, 391, 401, 1369
MmeI	TCCRAC	4 cut(s)	410, 1186, 1929, 2313
MreI	CGCCGGCG	1 cut(s)	263
MroI	TCCGGA	1 cut(s)	1933
MroNI	GCCGGC	4 cut(s)	199, 263, 422, 478
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	6 cut(s)	1140, 1467, 1691, 1698, 1797, 1860
MspA1I	CMGCKG	3 cut(s)	956, 1190, 1640
MspI	CCGG	7 cut(s)	182, 200, 264, 336, 423, 479, 1934
MspR9I	CCNGG	6 cut(s)	182, 484, 1251, 1680, 1749, 2229
Mva1269I	GAATGC	2 cut(s)	779, 1769
MvaI	CCWGG	5 cut(s)	484, 1251, 1680, 1749, 2229
NaeI	GCCGGC	4 cut(s)	201, 265, 424, 480
NarI	GGCGCC	1 cut(s)	267
NciI	CCSGG	1 cut(s)	182
NcoI	CCATGG	1 cut(s)	1408
NdeI	CATATG	1 cut(s)	1510
NgoMIV	GCCGGC	4 cut(s)	199, 263, 422, 478
NlaIII	CATG	9 cut(s)	797, 1078, 1103, 1262, 1319, 1412, 1687, 1910, 1973
NlaIV	GGNNCC	7 cut(s)	204, 268, 477, 488, 904, 1654, 2077
NmeAIII	GCCGAG	2 cut(s)	420, 487
NmuCI	GTSAC	4 cut(s)	160, 169, 548, 2089
NspI	RCATGY	1 cut(s)	1910
NspV	TTCGAA	1 cut(s)	1170
PaeI	GCATGC	1 cut(s)	1910
PagI	TCATGA	2 cut(s)	1074, 1969
PaqCI	CACCTGC	1 cut(s)	51
PauI	GCGCGC	2 cut(s)	5, 233
PciSI	GCTCTTC	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PctI	GAATGC	2 cut(s)	779, 1769
PdiI	GCCGGC	4 cut(s)	201, 265, 424, 480
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	4 cut(s)	152, 308, 324, 2234
PflFI	GACNNNGTC	1 cut(s)	391
PflMI	CCANNNNNTGG	1 cut(s)	784
PkrI	GCNGC	7 cut(s)	198, 421, 838, 847, 958, 1087, 1363
Ple19I	CGATCG	1 cut(s)	2250
PleI	GAGTC	4 cut(s)	356, 390, 400, 1369
PluTI	GGCGCC	1 cut(s)	270
PmaCI	CACGTG	1 cut(s)	436
PmlI	CACGTG	1 cut(s)	436
PpsI	GAGTC	4 cut(s)	356, 390, 400, 1369
Ppu21I	YACGTR	1 cut(s)	436
PshBI	ATTAAT	1 cut(s)	1467
PsiI	TTATAA	2 cut(s)	1001, 1821
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	5 cut(s)	482, 1249, 1678, 1747, 2227
PspCI	CACGTG	1 cut(s)	436
PspEI	GGTNACC	1 cut(s)	2089
PspFI	CCCAGC	2 cut(s)	444, 952
PspGI	CCWGG	5 cut(s)	482, 1249, 1678, 1747, 2227
PspN4I	GGNNCC	7 cut(s)	204, 268, 477, 488, 904, 1654, 2077
PspPI	GGNCC	3 cut(s)	1565, 2039, 2075
PsuI	RGATCY	2 cut(s)	1006, 2257
PsyI	GACNNNGTC	1 cut(s)	391
PteI	GCGCGC	2 cut(s)	5, 233
PvuI	CGATCG	1 cut(s)	2250
PvuII	CAGCTG	2 cut(s)	956, 1190
RsaI	GTAC	4 cut(s)	191, 1031, 1338, 2306
RsaNI	GTAC	4 cut(s)	190, 1030, 1337, 2305
SacI	GAGCTC	1 cut(s)	231
SacII	CCGCGG	1 cut(s)	1641
SapI	GCTCTTC	1 cut(s)	53
SaqAI	TTAA	6 cut(s)	1140, 1467, 1691, 1698, 1797, 1860
SatI	GCNGC	7 cut(s)	197, 420, 837, 846, 957, 1086, 1362
Sau96I	GGNCC	3 cut(s)	1565, 2039, 2075
SchI	GAGTC	4 cut(s)	357, 391, 401, 1369
ScrFI	CCNGG	6 cut(s)	182, 484, 1251, 1680, 1749, 2229
SduI	GDGCHC	5 cut(s)	231, 435, 441, 491, 2321
SfaNI	GCATC	2 cut(s)	1065, 1761
SfcI	CTRYAG	2 cut(s)	1365, 1455
SfoI	GGCGCC	1 cut(s)	268
Sfr303I	CCGCGG	1 cut(s)	1641
SfuI	TTCGAA	1 cut(s)	1170
SgrAI	CRCCGGYG	1 cut(s)	263
SgrBI	CCGCGG	1 cut(s)	1641
SinI	GGWCC	2 cut(s)	1565, 2039
SmlI	CTYRAG	2 cut(s)	239, 840
SmoI	CTYRAG	2 cut(s)	239, 840
SphI	GCATGC	1 cut(s)	1910
SspDI	GGCGCC	1 cut(s)	266
SspI	AATATT	2 cut(s)	1780, 2326
SspMI	CTAG	6 cut(s)	710, 801, 878, 1017, 1388, 1812
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	6 cut(s)	180, 482, 1249, 1678, 1747, 2227
StyI	CCWWGG	2 cut(s)	877, 1408
TaaI	ACNGT	9 cut(s)	178, 548, 554, 654, 697, 1336, 1742, 1947, 2285
TaiI	ACGT	2 cut(s)	438, 1324
TaqI	TCGA	6 cut(s)	213, 219, 300, 719, 1150, 1170
TaqII	GACCGA	1 cut(s)	404
TatI	WGTACW	1 cut(s)	1029
TauI	GCSGC	3 cut(s)	199, 422, 1364
TfiI	GAWTC	4 cut(s)	152, 308, 324, 2234
Tru1I	TTAA	6 cut(s)	1140, 1467, 1691, 1698, 1797, 1860
Tru9I	TTAA	6 cut(s)	1140, 1467, 1691, 1698, 1797, 1860
TscAI	CASTG	6 cut(s)	553, 1058, 1747, 1950, 1991, 2290
TseFI	GTSAC	4 cut(s)	160, 169, 548, 2089
TseI	GCWGC	4 cut(s)	836, 845, 956, 1085
Tsp45I	GTSAC	4 cut(s)	160, 169, 548, 2089
TspDTI	ATGAA	4 cut(s)	615, 782, 1116, 2231
TspGWI	ACGGA	2 cut(s)	318, 957
TspRI	CASTG	6 cut(s)	553, 1058, 1747, 1950, 1991, 2290
Tth111I	GACNNNGTC	1 cut(s)	391
Van91I	CCANNNNNTGG	1 cut(s)	784
VpaK11BI	GGWCC	2 cut(s)	1565, 2039
VspI	ATTAAT	1 cut(s)	1467
XagI	CCTNNNNNAGG	4 cut(s)	897, 936, 1438, 2084
XapI	RAATTY	7 cut(s)	209, 634, 789, 858, 885, 1547, 2032
XbaI	TCTAGA	1 cut(s)	1811
XceI	RCATGY	1 cut(s)	1910
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1934
XmaJI	CCTAGG	1 cut(s)	877
XmiI	GTMKAC	2 cut(s)	1626, 1719
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	6 cut(s)	710, 801, 878, 1017, 1388, 1812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.