Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005831

Physical Location & Seq

Genomic Coordinates Reverse (-)

26389524 .. 26389856

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1156300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGCGCGCACAACCCCAATTCTCAACCGAAACAACACATACTTGCTCTTCACCTCCGTTACTCCCCGCTCTCACTTCCACTCCCTCACCTCTCTCCGCCTCGCCAAACCCTCACTCTCCCACACTCTCTCCTCCTCCTCTTCTTTATCGTCGAGCTCGCCGTCGTGCCACATCACGCGTGTCACCACCGTTCCGGTAGAGTACGCGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006629 GO:0006725 GO:0006790 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009225 GO:0009226 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046505 GO:0046506 GO:0051748 GO:0055086 GO:0070569 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGP

Protein Analysis

71

Amino Acids

7.64

Weight (kDa)

10.89

Isoelectric Point (pI)

75.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56040
fragaria_vesca	FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830
malus_domestica	MD01G1156200.v1.1 MD01G1156300.v1.1 MD07G1224900.v1.1
prunus_persica	Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1
pyrus_communis	pycom07g20360
rosa_chinensis	RchiOBHm_Chr1g0370701
rosa_laevigata	RLG00000027016
rosa_multiflora	Rmu_sc0004550.1_g000012
rosa_roxburghii	Rroxscaffold_4G00286290
rosa_rugosa	Rorug01G0358600
rosa_samantha	Rh1AG368300 Rh1BG331700 Rh1CG345700 Rh1DG363100
rosa_wichuraiana	Rw1G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	69
AccII	CGCG	3 cut(s)	7, 178, 206
AciI	CCGC	2 cut(s)	67, 97
AfaI	GTAC	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	176
AluBI	AGCT	1 cut(s)	156
AluI	AGCT	1 cut(s)	156
Alw21I	GWGCWC	1 cut(s)	158
AspLEI	GCGC	3 cut(s)	7, 9, 208
AsuHPI	GGTGA	3 cut(s)	43, 79, 175
BanII	GRGCYC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	158
BceAI	ACGGC	2 cut(s)	145, 193
BsaWI	WCCGGW	1 cut(s)	193
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 113, 143
BsePI	GCGCGC	1 cut(s)	5
BseRI	GAGGAG	3 cut(s)	121, 124, 127
Bsh1236I	CGCG	3 cut(s)	7, 178, 206
BsiHKAI	GWGCWC	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	158
BspACI	CCGC	2 cut(s)	67, 97
BspFNI	CGCG	3 cut(s)	7, 178, 206
BspQI	GCTCTTC	1 cut(s)	53
BsrBI	CCGCTC	1 cut(s)	69
BssHII	GCGCGC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	2 cut(s)	53, 145
BstC8I	GCNNGC	2 cut(s)	7, 158
BstFNI	CGCG	3 cut(s)	7, 178, 206
BstHHI	GCGC	3 cut(s)	7, 9, 208
BstUI	CGCG	3 cut(s)	7, 178, 206
Cac8I	GCNNGC	2 cut(s)	7, 158
CfoI	GCGC	3 cut(s)	7, 9, 208
Csp6I	GTAC	1 cut(s)	202
CviJI	RGCY	1 cut(s)	156
CviKI_1	RGCY	1 cut(s)	156
CviQI	GTAC	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	53, 145
EarI	CTCTTC	2 cut(s)	53, 145
EciI	GGCGGA	1 cut(s)	86
Ecl136II	GAGCTC	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	156
EcoICRI	GAGCTC	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	158
FaiI	YATR	1 cut(s)	40
FauI	CCCGC	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	158
GlaI	GCGC	3 cut(s)	6, 8, 207
HapII	CCGG	1 cut(s)	194
HhaI	GCGC	3 cut(s)	7, 9, 208
Hin6I	GCGC	3 cut(s)	5, 7, 206
HinP1I	GCGC	3 cut(s)	5, 7, 206
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	3 cut(s)	43, 79, 175
Hpy99I	CGWCG	2 cut(s)	154, 166
HpyCH4III	ACNGT	1 cut(s)	190
HspAI	GCGC	3 cut(s)	5, 7, 206
LguI	GCTCTTC	1 cut(s)	53
LpnPI	CCDG	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	58, 181
MbiI	CCGCTC	1 cut(s)	69
MboII	GAAGA	2 cut(s)	40, 132
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	1 cut(s)	18
MluI	ACGCGT	1 cut(s)	176
MnlI	CCTC	8 cut(s)	64, 95, 100, 110, 121, 142, 145, 148
MspI	CCGG	1 cut(s)	194
MvnI	CGCG	3 cut(s)	7, 178, 206
NmuCI	GTSAC	1 cut(s)	181
PauI	GCGCGC	1 cut(s)	5
PciSI	GCTCTTC	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
Psp124BI	GAGCTC	1 cut(s)	158
PteI	GCGCGC	1 cut(s)	5
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SacI	GAGCTC	1 cut(s)	158
SapI	GCTCTTC	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	3 cut(s)	56, 92, 158
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	2 cut(s)	67, 97
SstI	GAGCTC	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	190
TaqI	TCGA	1 cut(s)	152
TasI	AATT	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspGWI	ACGGA	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.