Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005831

Physical Location & Seq

Genomic Coordinates Forward (+)

47444105 .. 47445259

Gene Structure 1155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0358600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGACGAGCATCGAGCCTTTCAACAGGTTGGTGAAGCTTGCGGCCAGAGCGTTGTACGATGATGATATAGCAACGTATTCATCGAAAGGGGCTAATTCTCAGCTCAAGAGTGGCCGGAGCGTCGAAAATAGAGGAATCGGCGTGGTTGTGCTGGAAGCGCTATCGAGAAGACAATGGGTAAGAGAAGAAGATTTGGCCAAGGACTTGAAACTCAACTCGAAGCAACTTCGTCGTACTTTGCAATTTTTCGAGGAGGAAAAACTGGTCACTCGAGACCATAGGAAAGAACGACATGCAAAGAAAGAAGGGGAAGAGAAAATAAAGTTGCACACTTACTCTTACTGCTGTCTGGACTATGCTCAGATGTACGATGTAGTGAGGTACAGACTGCATCGCATGAAGAAAAGACTGAAAGATGCATTGGAGGACAAGAACACAGTACAACAATACTTATGCCACAATTGTGGGAACAGATACAACGCTTTGGATGCACTGCGATTGATTTCGATGGAGGATGATGAGTACTTTCACTGTGAAAGATGCAATGGGAAACTTGTGGTGGTTGAGACTAACAATGAGCTAGCTTCTCCACAAGTAGGAGATGAAGAAAGCAATATTTCAAGGAGACAAAGGCGTGAGAAATCGAAAGTCATGCTTCGAAATATGGAGGAACAACTGAAGCCTTTAATGGAACAAATTAATAGGGTTAAGGATTTACCTGTTCCTCAGTTTGGAACACTCCGAGATTGGGAAGCGCGAGCTAAATCTTCTGATGGACATGATTTTGGAGGTACAAAGGTTGAAGTTGAAGTTACTTGGGTTAAAGAAGACAAGGGCGACGATATTAAATCGGAATTAGATGATCCTACTACAAGTTTGGGGAAAATTGTGCCACCTTGGATGAACAAGCAAGGGATGAATAACCTTCCAAATCACGAACAACATGGACATTTTTCAGATGACATAAAGGCAAACACTCATGAAGATAATGAGAGCAAGAGTACTTTACAGGAGGAGTATTATAAAGCTTATTATCGTGCTCTAATACAAAGACAACAAGAAGAAGAAGCAAATATTCGCGAGGTTGGCATGAAGTCAAAATGTGATCGGAAAGAAGGAGAGGATGAAGATGATATTGACTGGCAGGAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006629 GO:0006725 GO:0006790 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009225 GO:0009226 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046505 GO:0046506 GO:0051748 GO:0055086 GO:0070569 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGP

Protein Analysis

384

Amino Acids

44.95

Weight (kDa)

5.88

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIE_alpha	PF02002	48 - 144	8.9e-12	TFIIE alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56040
fragaria_vesca	FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830
malus_domestica	MD01G1156200.v1.1 MD01G1156300.v1.1 MD07G1224900.v1.1
prunus_persica	Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1
pyrus_communis	pycom07g20360
rosa_chinensis	RchiOBHm_Chr1g0370701
rosa_laevigata	RLG00000027016
rosa_multiflora	Rmu_sc0004550.1_g000012
rosa_roxburghii	Rroxscaffold_4G00286290
rosa_rugosa	Rorug01G0358600
rosa_samantha	Rh1AG368300 Rh1BG331700 Rh1CG345700 Rh1DG363100
rosa_wichuraiana	Rw1G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1023
AccII	CGCG	2 cut(s)	757, 1080
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	1 cut(s)	857
AcoI	YGGCCR	3 cut(s)	42, 112, 195
AcuI	CTGAAG	1 cut(s)	698
AfaI	GTAC	8 cut(s)	56, 235, 368, 383, 441, 524, 793, 1003
AfeI	AGCGCT	1 cut(s)	159
AfiI	CCNNNNNNNGG	3 cut(s)	596, 731, 748
AgsI	TTSAA	5 cut(s)	22, 208, 621, 803, 809
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AleI	CACNNNNGTG	1 cut(s)	462
AluBI	AGCT	6 cut(s)	37, 103, 580, 584, 761, 1028
AluI	AGCT	6 cut(s)	37, 103, 580, 584, 761, 1028
Alw21I	GWGCWC	1 cut(s)	1042
Alw26I	GTCTC	3 cut(s)	267, 560, 619
AlwI	GGATC	1 cut(s)	857
Ama87I	CYCGRG	1 cut(s)	270
Aor51HI	AGCGCT	1 cut(s)	159
AoxI	GGCC	3 cut(s)	42, 112, 195
AseI	ATTAAT	1 cut(s)	699
AspLEI	GCGC	2 cut(s)	160, 757
AsuHPI	GGTGA	1 cut(s)	43
AsuII	TTCGAA	1 cut(s)	658
AsuNHI	GCTAGC	1 cut(s)	580
AvaI	CYCGRG	1 cut(s)	270
BaeI	ACNNNNGTAYC	2 cut(s)	783, 816
BalI	TGGCCA	1 cut(s)	197
BbsI	GAAGAC	2 cut(s)	175, 834
Bbv12I	GWGCWC	1 cut(s)	1042
BccI	CCATC	2 cut(s)	502, 767
BcgI	CGANNNNNNTGC	4 cut(s)	212, 246, 634, 668
BcoDI	GTCTC	3 cut(s)	267, 560, 619
BfaI	CTAG	1 cut(s)	581
BfoI	RGCGCY	1 cut(s)	161
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
BmcAI	AGTACT	2 cut(s)	524, 1003
BmeT110I	CYCGRG	1 cut(s)	270
BmsI	GCATC	5 cut(s)	18, 400, 406, 478, 530
BmtI	GCTAGC	1 cut(s)	584
BpiI	GAAGAC	2 cut(s)	175, 834
Bpu14I	TTCGAA	1 cut(s)	658
BpuEI	CTTGAG	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	198, 896
Bsc4I	CCNNNNNNNGG	3 cut(s)	596, 731, 748
Bse1I	ACTGG	2 cut(s)	267, 1145
Bse3DI	GCAATG	1 cut(s)	550
BseDI	CCNNGG	2 cut(s)	198, 896
BseGI	GGATG	5 cut(s)	493, 520, 906, 921, 1129
BseLI	CCNNNNNNNGG	3 cut(s)	596, 731, 748
BseMI	GCAATG	1 cut(s)	550
BseMII	CTCAG	3 cut(s)	113, 374, 740
BseNI	ACTGG	2 cut(s)	267, 1145
BseRI	GAGGAG	2 cut(s)	266, 1028
Bsh1236I	CGCG	2 cut(s)	757, 1080
BshFI	GGCC	3 cut(s)	44, 114, 197
BsiHKAI	GWGCWC	1 cut(s)	1042
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	115
BslI	CCNNNNNNNGG	3 cut(s)	596, 731, 748
BsmAI	GTCTC	3 cut(s)	267, 560, 619
BsnI	GGCC	3 cut(s)	44, 114, 197
Bso31I	GGTCTC	1 cut(s)	267
BsoBI	CYCGRG	1 cut(s)	270
Bsp119I	TTCGAA	1 cut(s)	658
Bsp1286I	GDGCHC	1 cut(s)	1042
Bsp143I	GATC	2 cut(s)	862, 1105
Bsp68I	TCGCGA	1 cut(s)	1080
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	3 cut(s)	44, 114, 197
BspCNI	CTCAG	3 cut(s)	112, 373, 739
BspFNI	CGCG	2 cut(s)	757, 1080
BspHI	TCATGA	1 cut(s)	979
BspOI	GCTAGC	1 cut(s)	584
BspPI	GGATC	1 cut(s)	857
BspT104I	TTCGAA	1 cut(s)	658
BspTNI	GGTCTC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	550
BsrI	ACTGG	2 cut(s)	267, 1145
BssECI	CCNNGG	2 cut(s)	198, 896
BssMI	GATC	2 cut(s)	862, 1105
BssT1I	CCWWGG	2 cut(s)	198, 896
Bst4CI	ACNGT	2 cut(s)	439, 533
Bst6I	CTCTTC	1 cut(s)	306
BstBI	TTCGAA	1 cut(s)	658
BstC8I	GCNNGC	3 cut(s)	39, 582, 759
BstDEI	CTNAG	3 cut(s)	99, 360, 726
BstF5I	GGATG	5 cut(s)	493, 520, 906, 921, 1129
BstFNI	CGCG	2 cut(s)	757, 1080
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	2 cut(s)	160, 757
BstKTI	GATC	2 cut(s)	865, 1108
BstMAI	GTCTC	3 cut(s)	267, 560, 619
BstMBI	GATC	2 cut(s)	862, 1105
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 157, 488, 1086
BstNSI	RCATGY	1 cut(s)	296
BstUI	CGCG	2 cut(s)	757, 1080
BstV2I	GAAGAC	2 cut(s)	175, 834
BstXI	CCANNNNNNTGG	1 cut(s)	464
BsuRI	GGCC	3 cut(s)	44, 114, 197
BtgZI	GCGATG	1 cut(s)	377
BtsCI	GGATG	5 cut(s)	493, 520, 906, 921, 1129
BtsI	GCAGTG	1 cut(s)	491
BtsIMutI	CAGTG	2 cut(s)	491, 529
BtuMI	TCGCGA	1 cut(s)	1080
Cac8I	GCNNGC	3 cut(s)	39, 582, 759
CciI	TCATGA	1 cut(s)	979
CfoI	GCGC	2 cut(s)	160, 757
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	8 cut(s)	55, 234, 367, 382, 440, 523, 792, 1002
CviAII	CATG	7 cut(s)	293, 397, 652, 779, 944, 980, 1090
CviQI	GTAC	8 cut(s)	55, 234, 367, 382, 440, 523, 792, 1002
DdeI	CTNAG	3 cut(s)	99, 360, 726
DpnI	GATC	2 cut(s)	864, 1107
DpnII	GATC	2 cut(s)	862, 1105
EaeI	YGGCCR	3 cut(s)	42, 112, 195
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco130I	CCWWGG	2 cut(s)	198, 896
Eco31I	GGTCTC	1 cut(s)	267
Eco47III	AGCGCT	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	698
Eco88I	CYCGRG	1 cut(s)	270
EcoT14I	CCWWGG	2 cut(s)	198, 896
EcoT22I	ATGCAT	1 cut(s)	421
ErhI	CCWWGG	2 cut(s)	198, 896
FaeI	CATG	7 cut(s)	296, 400, 655, 782, 947, 983, 1093
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FatI	CATG	7 cut(s)	292, 396, 651, 778, 943, 979, 1089
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	5 cut(s)	500, 527, 913, 928, 1136
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	581
GlaI	GCGC	2 cut(s)	159, 756
GluI	GCNGC	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	3 cut(s)	44, 114, 197
HapII	CCGG	1 cut(s)	115
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	2 cut(s)	160, 757
Hin1II	CATG	7 cut(s)	296, 400, 655, 782, 947, 983, 1093
Hin6I	GCGC	2 cut(s)	158, 755
HinP1I	GCGC	2 cut(s)	158, 755
HindIII	AAGCTT	2 cut(s)	35, 1026
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	6 cut(s)	363, 743, 772, 853, 958, 1110
Hpy188III	TCNNGA	7 cut(s)	106, 165, 272, 350, 935, 980, 1079
Hpy99I	CGWCG	3 cut(s)	125, 234, 842
HpyAV	CCTTC	4 cut(s)	299, 935, 1109, 1142
HpyCH4III	ACNGT	2 cut(s)	439, 533
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	7 cut(s)	241, 296, 328, 391, 419, 491, 543
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 157, 488, 1086
HpyF3I	CTNAG	3 cut(s)	99, 360, 726
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	7 cut(s)	296, 400, 655, 782, 947, 983, 1093
HspAI	GCGC	2 cut(s)	158, 755
Kzo9I	GATC	2 cut(s)	862, 1105
LmnI	GCTCC	1 cut(s)	117
LweI	GCATC	5 cut(s)	18, 400, 406, 478, 530
MaeI	CTAG	1 cut(s)	581
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	2 cut(s)	265, 811
MalI	GATC	2 cut(s)	864, 1107
MboI	GATC	2 cut(s)	862, 1105
MfeI	CAATTG	1 cut(s)	460
MhlI	GDGCHC	1 cut(s)	1042
MlsI	TGGCCA	1 cut(s)	197
MluCI	AATT	6 cut(s)	94, 242, 460, 696, 854, 885
MluNI	TGGCCA	1 cut(s)	197
Mox20I	TGGCCA	1 cut(s)	197
Mph1103I	ATGCAT	1 cut(s)	421
MscI	TGGCCA	1 cut(s)	197
MseI	TTAA	5 cut(s)	686, 699, 708, 822, 846
MslI	CAYNNNNRTG	1 cut(s)	462
Msp20I	TGGCCA	1 cut(s)	197
MspI	CCGG	1 cut(s)	115
MunI	CAATTG	1 cut(s)	460
MvnI	CGCG	2 cut(s)	757, 1080
MwoI	GCNNNNNNNGC	4 cut(s)	47, 157, 488, 1086
NdeII	GATC	2 cut(s)	862, 1105
NheI	GCTAGC	1 cut(s)	580
NlaIII	CATG	7 cut(s)	296, 400, 655, 782, 947, 983, 1093
NmuCI	GTSAC	1 cut(s)	265
NruI	TCGCGA	1 cut(s)	1080
NsiI	ATGCAT	1 cut(s)	421
NspI	RCATGY	1 cut(s)	296
NspV	TTCGAA	1 cut(s)	658
OliI	CACNNNNGTG	1 cut(s)	462
PaeR7I	CTCGAG	1 cut(s)	270
PagI	TCATGA	1 cut(s)	979
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	135
PkrI	GCNGC	1 cut(s)	43
PshBI	ATTAAT	1 cut(s)	699
PsiI	TTATAA	1 cut(s)	1023
RruI	TCGCGA	1 cut(s)	1080
RsaI	GTAC	8 cut(s)	56, 235, 368, 383, 441, 524, 793, 1003
RsaNI	GTAC	8 cut(s)	55, 234, 367, 382, 440, 523, 792, 1002
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	5 cut(s)	686, 699, 708, 822, 846
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	2 cut(s)	862, 1105
ScaI	AGTACT	2 cut(s)	524, 1003
SduI	GDGCHC	1 cut(s)	1042
SfaNI	GCATC	5 cut(s)	18, 400, 406, 478, 530
Sfr274I	CTCGAG	1 cut(s)	270
SfuI	TTCGAA	1 cut(s)	658
SlaI	CTCGAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	2 cut(s)	104, 270
SmoI	CTYRAG	2 cut(s)	104, 270
Sse9I	AATT	6 cut(s)	94, 242, 460, 696, 854, 885
SsiI	CCGC	1 cut(s)	41
SspI	AATATT	2 cut(s)	616, 1075
SspMI	CTAG	1 cut(s)	581
StyI	CCWWGG	2 cut(s)	198, 896
TaaI	ACNGT	2 cut(s)	439, 533
TaiI	ACGT	1 cut(s)	77
TasI	AATT	6 cut(s)	94, 242, 460, 696, 854, 885
TatI	WGTACW	3 cut(s)	439, 522, 1001
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	5 cut(s)	686, 699, 708, 822, 846
Tru9I	TTAA	5 cut(s)	686, 699, 708, 822, 846
TscAI	CASTG	2 cut(s)	498, 536
TseFI	GTSAC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	8 cut(s)	69, 413, 618, 917, 932, 996, 1106, 1140
TspRI	CASTG	2 cut(s)	498, 536
VspI	ATTAAT	1 cut(s)	699
XceI	RCATGY	1 cut(s)	296
XhoI	CTCGAG	1 cut(s)	270
XspI	CTAG	1 cut(s)	581
ZrmI	AGTACT	2 cut(s)	524, 1003
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.