Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005831

Physical Location & Seq

Genomic Coordinates Reverse (-)

22488425 .. 22492479

Gene Structure 4055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20360.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGTCTCCCTGCTGCAATGCTTCCTTATTGTGGACGGACTTTATTGGAAGGTCTTATAAGATCGATCTTCAGGCTAGAGAGTTCTTGTACTTCAAGATGTACGGGAAACAATGCATCACCCCTGTTGCAATTATGACAAGCTCTGCAAAGAACAACCATGAACACATAACTTCTCTTTGTGAAAAGCTTGAATGGTTTAGAAGAGATCGATCAAGTTTCCAACTTTTTGAACAGCCCCTTGTTCCAGCCATTGGTGCAGAAAATGGGCAATGGATAATCACAAAACCTTTTGCACCCGTATGCAAGCCTGGTGGTCATGGTGTAATATGGAAACTTGCTTATGATAAAGGCATTTTCAAATGGTTTTATGATCATGGACGGAAGGGTGCAACTGTACGTCAAGTTAGCAATGTTGTGGCCGCTACAGATTTGACTCTCTTGGCACTGGCAGGGATTGGTTTACATCACGGCAAGAAACTGGGGTTTGCATCCTGTAAGAGGAACTTGGGGGCTACAGAAGGAATTAATGTCCTAACTGAGAAAAAAAATCTTGATGGAAGGTGGGCATATGGTTTGTCGTGCATTGAGTATACAGAGTTCGACAAGTTTGGCATAGCAGATAGACCTCATTCTCGAAATAGGTTGCAGGCAGAGTTTCCCGCCAATACGAACATCTTGTATGTAGATTTACCTTCAGCAGAGTTGGTCGGGTCAAGTAACAGTGGAAACAGCTTACCAGGCATGGTGCTGAATGTTAAAAAGCCTATAACATTTGTAGACCAATTTGGAAAACAACACAGTGTCTCTGGTGGAAGGCTTGAATGCACGATGCAAAATATTGCTGACAGCTTTCTTAATACTTGTCCATCTCGATGTTATAAGGGTATTGAAGATAAGCTTGATACCTTCATTGTTTATAATGAACGAAGAAGGGTCACATCATCTGCTAAGAGGAAAAGAAGACATGCGGAGAAATCTTTACACCAAACTCCTGATGGTTCACTGTTGGATATCCTACGGAATGCCCATGATCTTCTTTCACAATGTGATATTGAACTTCCTGAGATTGGAAGTAATGAAAAATATCAAAGTTCGGGACCACCATTTCTTATTCTTCTGCACCCTGCTCTTGGCCCGCTTTGGGAGGTCACCAGACAAAAATTCTATGGAGGCTCAGTATCCGAGGGCTCTGAGTTACAAGTAGAAGTTGCAGAGTTTCTGTGGAGGAATGTTCAGCTTGATGGAAGCCTGATCGTAGAGGCTGATAACGTTATGGGCTCAACTAGGATTGATCAAAATGGTGAACCCATTTTACAATATGGGCACAGGTGTGGAAGATGTAAATTGCAAAATTTAAAAGTACTAAATGATGGAATTGACTGGAACTTTGAAGACAATGTGTACTGGAAGCATGATGTTCAACGCCTCGAGGCTTGGAAATCATACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006629 GO:0006725 GO:0006790 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009225 GO:0009226 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046505 GO:0046506 GO:0051748 GO:0055086 GO:0070569 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGP

Protein Analysis

484

Amino Acids

54.48

Weight (kDa)

8.44

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56040
fragaria_vesca	FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830
malus_domestica	MD01G1156200.v1.1 MD01G1156300.v1.1 MD07G1224900.v1.1
prunus_persica	Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1
pyrus_communis	pycom07g20360
rosa_chinensis	RchiOBHm_Chr1g0370701
rosa_laevigata	RLG00000027016
rosa_multiflora	Rmu_sc0004550.1_g000012
rosa_roxburghii	Rroxscaffold_4G00286290
rosa_rugosa	Rorug01G0358600
rosa_samantha	Rh1AG368300 Rh1BG331700 Rh1CG345700 Rh1DG363100
rosa_wichuraiana	Rw1G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	57, 879, 918
AbsI	CCTCGAGG	1 cut(s)	1427
AccB7I	CCANNNNNTGG	1 cut(s)	251
AccI	GTMKAC	2 cut(s)	590, 777
AciI	CCGC	4 cut(s)	420, 660, 968, 1136
AclI	AACGTT	1 cut(s)	1269
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	2 cut(s)	1160, 1351
AcuI	CTGAAG	2 cut(s)	53, 678
AdeI	CACNNNGTG	1 cut(s)	1046
AfaI	GTAC	5 cut(s)	89, 101, 396, 1362, 1403
AfiI	CCNNNNNNNGG	6 cut(s)	30, 251, 498, 1067, 1130, 1141
AgsI	TTSAA	9 cut(s)	94, 191, 230, 358, 821, 890, 1055, 1391, 1421
AjnI	CCWGG	2 cut(s)	307, 736
AleI	CACNNNNGTG	1 cut(s)	1329
AluBI	AGCT	6 cut(s)	141, 187, 732, 849, 898, 1237
AluI	AGCT	6 cut(s)	141, 187, 732, 849, 898, 1237
Alw26I	GTCTC	2 cut(s)	9, 808
Ama87I	CYCGRG	1 cut(s)	1427
AoxI	GGCC	2 cut(s)	417, 1132
ApeKI	GCWGC	1 cut(s)	12
ApoI	RAATTY	2 cut(s)	1160, 1351
ArsI	GACNNNNNNTTYG	2 cut(s)	1370, 1402
AseI	ATTAAT	1 cut(s)	525
AspS9I	GGNCC	2 cut(s)	1097, 1133
AsuHPI	GGTGA	3 cut(s)	109, 1141, 1313
AvaI	CYCGRG	1 cut(s)	1427
AvaII	GGWCC	1 cut(s)	1097
BaeGI	GKGCMC	1 cut(s)	1326
BanII	GRGCYC	2 cut(s)	1190, 1280
BbsI	GAAGAC	2 cut(s)	967, 1398
BccI	CCATC	5 cut(s)	548, 874, 989, 1235, 1364
BceAI	ACGGC	1 cut(s)	484
BciT130I	CCWGG	2 cut(s)	309, 738
BciVI	GTATCC	1 cut(s)	1189
BclI	TGATCA	2 cut(s)	370, 1291
BcoDI	GTCTC	2 cut(s)	9, 808
BfaI	CTAG	2 cut(s)	75, 1284
BfmI	CTRYAG	2 cut(s)	423, 513
BfuI	GTATCC	1 cut(s)	1189
BisI	GCNGC	2 cut(s)	13, 420
BlsI	GCNGC	2 cut(s)	14, 421
BmcAI	AGTACT	1 cut(s)	1362
Bme1390I	CCNGG	2 cut(s)	309, 738
Bme18I	GGWCC	1 cut(s)	1097
BmeT110I	CYCGRG	1 cut(s)	1427
BmgT120I	GGNCC	2 cut(s)	1097, 1133
BmiI	GGNNCC	1 cut(s)	1098
BmrFI	CCNGG	2 cut(s)	309, 738
BmrI	ACTGGG	1 cut(s)	488
BmsI	GCATC	3 cut(s)	123, 497, 819
BmuI	ACTGGG	1 cut(s)	488
BpiI	GAAGAC	2 cut(s)	967, 1398
Bsa29I	ATCGAT	2 cut(s)	63, 208
BsaJI	CCNNGG	1 cut(s)	1182
BsaXI	ACNNNNNCTCC	2 cut(s)	1161, 1191
Bsc4I	CCNNNNNNNGG	6 cut(s)	30, 251, 498, 1067, 1130, 1141
Bse1I	ACTGG	4 cut(s)	450, 483, 1385, 1409
Bse3DI	GCAATG	3 cut(s)	22, 275, 415
BseBI	CCWGG	2 cut(s)	309, 738
BseCI	ATCGAT	2 cut(s)	63, 208
BseDI	CCNNGG	1 cut(s)	1182
BseGI	GGATG	1 cut(s)	488
BseLI	CCNNNNNNNGG	6 cut(s)	30, 251, 498, 1067, 1130, 1141
BseMI	GCAATG	3 cut(s)	22, 275, 415
BseMII	CTCAG	4 cut(s)	528, 1053, 1182, 1188
BseNI	ACTGG	4 cut(s)	450, 483, 1385, 1409
BseSI	GKGCMC	1 cut(s)	1326
BsgI	GTGCAG	2 cut(s)	276, 1103
BshFI	GGCC	2 cut(s)	419, 1134
BshVI	ATCGAT	2 cut(s)	63, 208
BsiHKCI	CYCGRG	1 cut(s)	1427
BslFI	GGGAC	1 cut(s)	1110
BslI	CCNNNNNNNGG	6 cut(s)	30, 251, 498, 1067, 1130, 1141
BsmAI	GTCTC	2 cut(s)	9, 808
BsmFI	GGGAC	1 cut(s)	1110
BsmI	GAATGC	2 cut(s)	827, 1027
BsnI	GGCC	2 cut(s)	419, 1134
BsoBI	CYCGRG	1 cut(s)	1427
Bsp1286I	GDGCHC	3 cut(s)	1190, 1280, 1326
Bsp143I	GATC	8 cut(s)	60, 64, 205, 209, 370, 1030, 1251, 1291
BspACI	CCGC	4 cut(s)	420, 660, 968, 1136
BspANI	GGCC	2 cut(s)	419, 1134
BspCNI	CTCAG	4 cut(s)	529, 1054, 1183, 1187
BspDI	ATCGAT	2 cut(s)	63, 208
BspLI	GGNNCC	1 cut(s)	1098
BsrDI	GCAATG	3 cut(s)	22, 275, 415
BsrI	ACTGG	4 cut(s)	450, 483, 1385, 1409
BssECI	CCNNGG	1 cut(s)	1182
BssMI	GATC	8 cut(s)	60, 64, 205, 209, 370, 1030, 1251, 1291
BssNAI	GTATAC	1 cut(s)	591
Bst1107I	GTATAC	1 cut(s)	591
Bst2UI	CCWGG	2 cut(s)	309, 738
Bst4CI	ACNGT	4 cut(s)	394, 722, 800, 1005
Bst6I	CTCTTC	1 cut(s)	196
BstC8I	GCNNGC	3 cut(s)	305, 648, 1136
BstDEI	CTNAG	5 cut(s)	537, 948, 1062, 1174, 1191
BstEII	GGTNACC	1 cut(s)	1147
BstENI	CCTNNNNNAGG	1 cut(s)	496
BstF5I	GGATG	1 cut(s)	488
BstKTI	GATC	8 cut(s)	63, 67, 208, 212, 373, 1033, 1254, 1294
BstMAI	GTCTC	2 cut(s)	9, 808
BstMBI	GATC	8 cut(s)	60, 64, 205, 209, 370, 1030, 1251, 1291
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 738
BstNI	CCWGG	2 cut(s)	309, 738
BstNSI	RCATGY	1 cut(s)	968
BstPI	GGTNACC	1 cut(s)	1147
BstSCI	CCNGG	2 cut(s)	307, 736
BstSFI	CTRYAG	2 cut(s)	423, 513
BstSLI	GKGCMC	1 cut(s)	1326
BstV2I	GAAGAC	2 cut(s)	967, 1398
BstZ17I	GTATAC	1 cut(s)	591
Bsu15I	ATCGAT	2 cut(s)	63, 208
BsuI	GTATCC	1 cut(s)	1189
BsuRI	GGCC	2 cut(s)	419, 1134
BsuTUI	ATCGAT	2 cut(s)	63, 208
BtsCI	GGATG	1 cut(s)	488
BtsIMutI	CAGTG	4 cut(s)	443, 727, 805, 1001
Cac8I	GCNNGC	3 cut(s)	305, 648, 1136
Cfr13I	GGNCC	2 cut(s)	1097, 1133
ClaI	ATCGAT	2 cut(s)	63, 208
Csp6I	GTAC	5 cut(s)	88, 100, 395, 1361, 1402
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	7 cut(s)	158, 317, 374, 742, 965, 1028, 1412
CviQI	GTAC	5 cut(s)	88, 100, 395, 1361, 1402
DdeI	CTNAG	5 cut(s)	537, 948, 1062, 1174, 1191
DpnI	GATC	8 cut(s)	62, 66, 207, 211, 372, 1032, 1253, 1293
DpnII	GATC	8 cut(s)	60, 64, 205, 209, 370, 1030, 1251, 1291
DraI	TTTAAA	1 cut(s)	1356
DraIII	CACNNNGTG	1 cut(s)	1046
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Eco24I	GRGCYC	2 cut(s)	1190, 1280
Eco32I	GATATC	1 cut(s)	1012
Eco47I	GGWCC	1 cut(s)	1097
Eco57I	CTGAAG	2 cut(s)	53, 678
Eco88I	CYCGRG	1 cut(s)	1427
Eco91I	GGTNACC	1 cut(s)	1147
EcoNI	CCTNNNNNAGG	1 cut(s)	496
EcoO65I	GGTNACC	1 cut(s)	1147
EcoRII	CCWGG	2 cut(s)	307, 736
EcoRV	GATATC	1 cut(s)	1012
EcoT22I	ATGCAT	1 cut(s)	116
EcoT38I	GRGCYC	2 cut(s)	1190, 1280
FaeI	CATG	7 cut(s)	161, 320, 377, 745, 968, 1031, 1415
FalI	AAGNNNNNCTT	4 cut(s)	488, 520, 882, 914
FaqI	GGGAC	1 cut(s)	1110
FatI	CATG	7 cut(s)	157, 316, 373, 741, 964, 1027, 1411
FauI	CCCGC	2 cut(s)	667, 1143
FauNDI	CATATG	1 cut(s)	568
FbaI	TGATCA	2 cut(s)	370, 1291
FblI	GTMKAC	2 cut(s)	590, 777
Fnu4HI	GCNGC	2 cut(s)	13, 420
FokI	GGATG	1 cut(s)	475
FriOI	GRGCYC	2 cut(s)	1190, 1280
Fsp4HI	GCNGC	2 cut(s)	13, 420
FspBI	CTAG	2 cut(s)	75, 1284
GluI	GCNGC	2 cut(s)	13, 420
HaeIII	GGCC	2 cut(s)	419, 1134
Hin1II	CATG	7 cut(s)	161, 320, 377, 745, 968, 1031, 1415
HindIII	AAGCTT	2 cut(s)	185, 896
HinfI	GANTC	1 cut(s)	433
HphI	GGTGA	3 cut(s)	109, 1141, 1313
Hpy166II	GTNNAC	7 cut(s)	33, 461, 591, 778, 1001, 1304, 1402
Hpy188I	TCNGA	2 cut(s)	1183, 1192
Hpy188III	TCNNGA	7 cut(s)	94, 551, 633, 870, 992, 1061, 1095
Hpy8I	GTNNAC	7 cut(s)	33, 461, 591, 778, 1001, 1304, 1402
HpyAV	CCTTC	8 cut(s)	42, 376, 512, 552, 702, 807, 916, 924
HpyCH4III	ACNGT	4 cut(s)	394, 722, 800, 1005
HpyCH4IV	ACGT	2 cut(s)	397, 1269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 738
HpyF3I	CTNAG	5 cut(s)	537, 948, 1062, 1174, 1191
HpySE526I	ACGT	2 cut(s)	397, 1269
Hsp92II	CATG	7 cut(s)	161, 320, 377, 745, 968, 1031, 1415
Ksp22I	TGATCA	2 cut(s)	370, 1291
Kzo9I	GATC	8 cut(s)	60, 64, 205, 209, 370, 1030, 1251, 1291
LweI	GCATC	3 cut(s)	123, 497, 819
MaeI	CTAG	2 cut(s)	75, 1284
MaeII	ACGT	2 cut(s)	397, 1269
MaeIII	GTNAC	4 cut(s)	716, 934, 1147, 1194
MalI	GATC	8 cut(s)	62, 66, 207, 211, 372, 1032, 1253, 1293
MboI	GATC	8 cut(s)	60, 64, 205, 209, 370, 1030, 1251, 1291
MboII	GAAGA	9 cut(s)	59, 213, 902, 939, 972, 1025, 1106, 1347, 1403
MhlI	GDGCHC	3 cut(s)	1190, 1280, 1326
MluCI	AATT	7 cut(s)	129, 522, 782, 1160, 1343, 1351, 1374
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	2 cut(s)	244, 987
Mph1103I	ATGCAT	1 cut(s)	116
MseI	TTAA	4 cut(s)	525, 756, 855, 1355
MslI	CAYNNNNRTG	3 cut(s)	298, 871, 1329
MspR9I	CCNGG	2 cut(s)	309, 738
Mva1269I	GAATGC	2 cut(s)	827, 1027
MvaI	CCWGG	2 cut(s)	309, 738
MwoI	GCNNNNNNNGC	2 cut(s)	254, 738
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	8 cut(s)	60, 64, 205, 209, 370, 1030, 1251, 1291
NlaIII	CATG	7 cut(s)	161, 320, 377, 745, 968, 1031, 1415
NlaIV	GGNNCC	1 cut(s)	1098
NmuCI	GTSAC	2 cut(s)	934, 1147
NsiI	ATGCAT	1 cut(s)	116
NspI	RCATGY	1 cut(s)	968
OliI	CACNNNNGTG	1 cut(s)	1329
PaeR7I	CTCGAG	1 cut(s)	1427
PctI	GAATGC	2 cut(s)	827, 1027
PflMI	CCANNNNNTGG	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	14, 421
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PshBI	ATTAAT	1 cut(s)	525
PsiI	TTATAA	3 cut(s)	57, 879, 918
Psp1406I	AACGTT	1 cut(s)	1269
Psp6I	CCWGG	2 cut(s)	307, 736
PspEI	GGTNACC	1 cut(s)	1147
PspGI	CCWGG	2 cut(s)	307, 736
PspN4I	GGNNCC	1 cut(s)	1098
PspPI	GGNCC	2 cut(s)	1097, 1133
PspXI	VCTCGAGB	1 cut(s)	1427
PsrI	GAACNNNNNNTAC	4 cut(s)	581, 613, 1296, 1328
RsaI	GTAC	5 cut(s)	89, 101, 396, 1362, 1403
RsaNI	GTAC	5 cut(s)	88, 100, 395, 1361, 1402
RseI	CAYNNNNRTG	3 cut(s)	298, 871, 1329
SaqAI	TTAA	4 cut(s)	525, 756, 855, 1355
SatI	GCNGC	2 cut(s)	13, 420
Sau3AI	GATC	8 cut(s)	60, 64, 205, 209, 370, 1030, 1251, 1291
Sau96I	GGNCC	2 cut(s)	1097, 1133
ScaI	AGTACT	1 cut(s)	1362
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	2 cut(s)	309, 738
SduI	GDGCHC	3 cut(s)	1190, 1280, 1326
SfaNI	GCATC	3 cut(s)	123, 497, 819
SfcI	CTRYAG	2 cut(s)	423, 513
Sfr274I	CTCGAG	1 cut(s)	1427
SinI	GGWCC	1 cut(s)	1097
SlaI	CTCGAG	1 cut(s)	1427
SmiMI	CAYNNNNRTG	3 cut(s)	298, 871, 1329
SmlI	CTYRAG	1 cut(s)	1427
SmoI	CTYRAG	1 cut(s)	1427
Sse9I	AATT	7 cut(s)	129, 522, 782, 1160, 1343, 1351, 1374
SsiI	CCGC	4 cut(s)	420, 660, 968, 1136
SspI	AATATT	1 cut(s)	838
SspMI	CTAG	2 cut(s)	75, 1284
StyD4I	CCNGG	2 cut(s)	307, 736
TaaI	ACNGT	4 cut(s)	394, 722, 800, 1005
TaiI	ACGT	2 cut(s)	400, 1272
TaqI	TCGA	6 cut(s)	63, 208, 600, 634, 871, 1428
TasI	AATT	7 cut(s)	129, 522, 782, 1160, 1343, 1351, 1374
TatI	WGTACW	3 cut(s)	87, 1360, 1401
TauI	GCSGC	1 cut(s)	422
Tru1I	TTAA	4 cut(s)	525, 756, 855, 1355
Tru9I	TTAA	4 cut(s)	525, 756, 855, 1355
TscAI	CASTG	4 cut(s)	450, 727, 805, 1008
TseFI	GTSAC	2 cut(s)	934, 1147
TseI	GCWGC	1 cut(s)	12
Tsp45I	GTSAC	2 cut(s)	934, 1147
TspDTI	ATGAA	4 cut(s)	174, 898, 936, 1092
TspGWI	ACGGA	3 cut(s)	50, 394, 1033
TspRI	CASTG	4 cut(s)	450, 727, 805, 1008
Van91I	CCANNNNNTGG	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	1097
VspI	ATTAAT	1 cut(s)	525
XagI	CCTNNNNNAGG	1 cut(s)	496
XapI	RAATTY	2 cut(s)	1160, 1351
XceI	RCATGY	1 cut(s)	968
XcmI	CCANNNNNNNNNTGG	1 cut(s)	992
XhoI	CTCGAG	1 cut(s)	1427
XmiI	GTMKAC	2 cut(s)	590, 777
XspI	CTAG	2 cut(s)	75, 1284
ZrmI	AGTACT	1 cut(s)	1362
Zsp2I	ATGCAT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.