Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005831

Physical Location & Seq

Genomic Coordinates Reverse (-)

58982434 .. 58991233

Gene Structure 8800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG363100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2118 bp

ATGGCGCGCTCAGCTCCAATTCTCAACCGCGACACCTCGCACTTGCTCTTCACCTTCAAACCTCCCCACTCTCCCTTCCACTCTCTCACTTCTCTCCGCCTCACCAAGCCTACTCTCCTCCCTACTCTTCTATCTTCTTCTTCTTCTTCGCCTGGTTCTTGTGTCACGCGCGTCACCACCGTCCCGGTAGAGTACGCGCCGCCGGCTTCCGAATTCGAGTTCCACAGCGAGCTCGCGCGCCTCAAGTCTCTCCGCTCCCGCCTCGCCGGCGCCAAATCGCTACGCGCCAAAACCAGAGTGATCGACGGAGATTCCAGAGCGAAAAGATTCTTCAATTCCGGCAACAACCGAGTCTTCTCTGCGGTTTTGGCCTCGCTGGATTTGAGTCCGACCGAGTTGTTCTTGTTCAAGTGCCTCGTCGCCGCCGGCCAAGAGCACGTGCTCGGCTGGGGGTTTGAGTTCGCCGAGAGCGAGGCGGAGCCGGGCGGGAGCCCCGTGAAGACCGCGTTTTACGCCATTGTTGAAATGATTGAGAAATTGGATGTGAACAGTGACGGTTCGGGGAAGAAGAAGAAGAAGAAGGTTCGGTTTGCTTTGAATGATGAAGATTTTGAGGACTTGAAGAAGCTATTGAAGAATTTGGGAGAGGTTGAACAGTTCTATAACTGCATTGGAGGAGTGATTGGATATCAGATAACAGTAATGGAGCTTCTAGCGCAATCGAGAGTTGAAATGCAGACTACAAATTGGTATAACAACATACAAGAGCAGATGGAATGCCAGTTTTTGGAAATTCATGCACCTAGTGGACTTGATCTTTCTGAAAATGCAGAATATGCAGCTCAAGCTGCTCTATGGGGAATTCAGGGTTTGTCAGACCTAGGTGAAATTTATCCTCTGGGAGGCTCCGCCGACAGGCTTGGTTTGGTTGATCCTGATACAGGTGAATGTCTCCCAGCTGCAATGCTTCCTTATTGTGGGCGGACTTTATTGGAAGGTCTTATAAGAGATCTTCAGGCTAGAGAGTTTTTGTACTTCAAGATTTATGCGAAGCAGTGCATCACTCCTGTTGCTATCATGACAAGTGCTGCAAAGAACAACCATGAACACATAACTTGTCTTTGTGAAAAACTTGAATGGTTTAAGAGAGGTCGATCAAGTTTCCAACTTTTCGAACAGCCCCTTGTTCCAGCTGTTAGTGCAGAGGATGGGCAATGGATAATCAAGAAACCTTTTGCTCCCATTTGCAAGCCTGGTGGTCATGGTGTGATATGGAAACTTGCTTATGATAAAGGCATTTTCCAATGGTTTTATGATCATGGACGTAAAGGTGCAACTGTACGACAAGTTAGCAATGTTGTCGCCGCTACAGATTTGACTCTCTTGGCACTAGCAGGGATTGGTTTACACCATGGGAAGAAACTGGGGTTTGCTTCCTGTAAGAGGAACTCGGGGGCTACAGAAGGAATTAATGTTCTAATGGAGAAGAAAAATCTGGATGGAAGGTGGGCATATGGTTTGTCTTGCATTGAATACACAGAGTTTGATAAATTTGGGATAGCAGATGGACCTCATTCTCGTAATAGTTTGCAGGCAGAGTTCCCTGCCAATACAAACATTTTGTATGTAGACTTACCTTCCGCGGAGTTGGTGGGTTCCAGTAAGAATACAGACAGCTTACCTGGCATGGTGTTAAATGTTAAAAAGGCGATATCATTTGTAGACAATTTTGGAAATCCACACAGTGTTCCTGGTGGCAGGCTTGAATGCACAATGCAAAATATTGCCGACAATTTTCTTAATACACATCCATCTAGAGATTATAAAGGCATTGAAGATAAGCTTGATACCTTTATTGTTTTTAATAAAAGAAGACGGGTTACATCATCTACTAAGAGGAAAAGAAGGCATGCAGACAAATCTTTACACCAAACTCCGGATGGTTCGCTGTTGGATATCCTAAGAAATGCTCATGACCTTCTGTCTCAGTGTGATATTCAACTTCCTGAGATTGGAAGTAATGACAAGTATCTAAATTCTGGACCACCATTTCTTATTCTTCTGCACCCTGCTCTTGGCCCCCTTTGGGAGGTCACCAGACAAAAGGTAAGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006629 GO:0006725 GO:0006790 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009225 GO:0009226 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046505 GO:0046506 GO:0051748 GO:0055086 GO:0070569 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGP

Protein Analysis

705

Amino Acids

78.11

Weight (kDa)

8.37

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56040
fragaria_vesca	FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830
malus_domestica	MD01G1156200.v1.1 MD01G1156300.v1.1 MD07G1224900.v1.1
prunus_persica	Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1
pyrus_communis	pycom07g20360
rosa_chinensis	RchiOBHm_Chr1g0370701
rosa_laevigata	RLG00000027016
rosa_multiflora	Rmu_sc0004550.1_g000012
rosa_roxburghii	Rroxscaffold_4G00286290
rosa_rugosa	Rorug01G0358600
rosa_samantha	Rh1AG368300 Rh1BG331700 Rh1CG345700 Rh1DG363100
rosa_wichuraiana	Rw1G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1004, 1824
AccB1I	GGYRCC	1 cut(s)	269
AccB7I	CCANNNNNTGG	1 cut(s)	787
AccBSI	CCGCTC	1 cut(s)	255
AccI	GTMKAC	2 cut(s)	1629, 1722
AccIII	TCCGGA	1 cut(s)	1936
AclWI	GGATC	1 cut(s)	926
AcoI	YGGCCR	1 cut(s)	427
AcsI	RAATTY	7 cut(s)	212, 637, 792, 861, 888, 1550, 2035
AcuI	CTGAAG	1 cut(s)	998
AcvI	CACGTG	1 cut(s)	439
AcyI	GRCGYC	1 cut(s)	270
AdeI	CACNNNGTG	2 cut(s)	806, 1745
AfaI	GTAC	3 cut(s)	194, 1034, 1341
AhdI	GACNNNNNGTC	1 cut(s)	1981
AjnI	CCWGG	4 cut(s)	151, 1252, 1681, 1750
AloI	GAACNNNNNNTCC	2 cut(s)	1458, 1490
Alw21I	GWGCWC	3 cut(s)	234, 438, 444
Alw26I	GTCTC	3 cut(s)	252, 956, 1989
AlwI	GGATC	1 cut(s)	926
Ama87I	CYCGRG	1 cut(s)	1450
Aor13HI	TCCGGA	1 cut(s)	1936
AoxI	GGCC	3 cut(s)	369, 427, 2077
ApeKI	GCWGC	4 cut(s)	839, 848, 959, 1088
ApoI	RAATTY	7 cut(s)	212, 637, 792, 861, 888, 1550, 2035
ArsI	GACNNNNNNTTYG	1 cut(s)	2095
AseI	ATTAAT	1 cut(s)	1470
Asp700I	GAANNNNTTC	1 cut(s)	326
AspA2I	CCTAGG	1 cut(s)	880
AspLEI	GCGC	9 cut(s)	7, 9, 171, 199, 238, 240, 272, 287, 718
AspS9I	GGNCC	3 cut(s)	1568, 2042, 2078
AsuC2I	CCSGG	2 cut(s)	185, 483
AsuHPI	GGTGA	6 cut(s)	43, 94, 166, 896, 956, 2086
AsuII	TTCGAA	1 cut(s)	1173
AvaI	CYCGRG	1 cut(s)	1450
AvaII	GGWCC	2 cut(s)	1568, 2042
AvrII	CCTAGG	1 cut(s)	880
BanI	GGYRCC	1 cut(s)	269
BanII	GRGCYC	2 cut(s)	234, 494
BarI	GAAGNNNNNNTAC	4 cut(s)	693, 725, 1864, 1896
BbrPI	CACGTG	1 cut(s)	439
BbsI	GAAGAC	3 cut(s)	346, 506, 1879
Bbv12I	GWGCWC	3 cut(s)	234, 438, 444
BbvI	GCAGC	4 cut(s)	835, 851, 946, 1075
BccI	CCATC	6 cut(s)	766, 1202, 1493, 1559, 1819, 1934
BcgI	CGANNNNNNTGC	2 cut(s)	1342, 1376
BciT130I	CCWGG	4 cut(s)	153, 1254, 1683, 1752
BclI	TGATCA	1 cut(s)	1315
BcnI	CCSGG	2 cut(s)	185, 483
BcoDI	GTCTC	3 cut(s)	252, 956, 1989
BfaI	CTAG	6 cut(s)	713, 804, 881, 1020, 1391, 1815
BfmI	CTRYAG	2 cut(s)	1368, 1458
BfoI	RGCGCY	1 cut(s)	273
BglI	GCCNNNNNGGC	1 cut(s)	267
BglII	AGATCT	1 cut(s)	1009
BisI	GCNGC	7 cut(s)	200, 423, 840, 849, 960, 1089, 1365
BlnI	CCTAGG	1 cut(s)	880
BlpI	GCTNAGC	1 cut(s)	10
BlsI	GCNGC	7 cut(s)	201, 424, 841, 850, 961, 1090, 1366
Bme1390I	CCNGG	6 cut(s)	153, 185, 483, 1254, 1683, 1752
Bme18I	GGWCC	2 cut(s)	1568, 2042
BmeRI	GACNNNNNGTC	1 cut(s)	1981
BmeT110I	CYCGRG	1 cut(s)	1450
BmgT120I	GGNCC	3 cut(s)	1568, 2042, 2078
BmiI	GGNNCC	6 cut(s)	271, 480, 491, 907, 1657, 2080
BmrFI	CCNGG	6 cut(s)	153, 185, 483, 1254, 1683, 1752
BmrI	ACTGGG	1 cut(s)	1433
BmsI	GCATC	1 cut(s)	1068
BmuI	ACTGGG	1 cut(s)	1433
BpiI	GAAGAC	3 cut(s)	346, 506, 1879
Bpu1102I	GCTNAGC	1 cut(s)	10
Bpu14I	TTCGAA	1 cut(s)	1173
BpuEI	CTTGAG	2 cut(s)	227, 828
BpuMI	CCSGG	2 cut(s)	185, 483
BsaAI	YACGTR	1 cut(s)	439
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	3 cut(s)	880, 1411, 1641
BsaWI	WCCGGW	1 cut(s)	1936
Bse118I	RCCGGY	3 cut(s)	202, 266, 425
Bse1I	ACTGG	3 cut(s)	781, 1428, 1659
Bse3DI	GCAATG	3 cut(s)	969, 1220, 1360
BseAI	TCCGGA	1 cut(s)	1936
BseBI	CCWGG	4 cut(s)	153, 1254, 1683, 1752
BseDI	CCNNGG	3 cut(s)	880, 1411, 1641
BseGI	GGATG	5 cut(s)	547, 1213, 1504, 1807, 1945
BseMI	GCAATG	3 cut(s)	969, 1220, 1360
BseMII	CTCAG	3 cut(s)	24, 1998, 2000
BseNI	ACTGG	3 cut(s)	781, 1428, 1659
BsePI	GCGCGC	2 cut(s)	5, 236
BseRI	GAGGAG	2 cut(s)	107, 690
BseXI	GCAGC	4 cut(s)	835, 851, 946, 1075
BseYI	CCCAGC	2 cut(s)	447, 955
BsgI	GTGCAG	2 cut(s)	1221, 2048
Bsh1285I	CGRYCG	1 cut(s)	393
BshFI	GGCC	3 cut(s)	371, 429, 2079
BshNI	GGYRCC	1 cut(s)	269
BsiEI	CGRYCG	1 cut(s)	393
BsiHKAI	GWGCWC	3 cut(s)	234, 438, 444
BsiHKCI	CYCGRG	1 cut(s)	1450
BsiSI	CCGG	7 cut(s)	185, 203, 267, 339, 426, 482, 1937
BslFI	GGGAC	1 cut(s)	167
BsmAI	GTCTC	3 cut(s)	252, 956, 1989
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	2 cut(s)	782, 1772
BsnI	GGCC	3 cut(s)	371, 429, 2079
BsoBI	CYCGRG	1 cut(s)	1450
Bsp119I	TTCGAA	1 cut(s)	1173
Bsp1286I	GDGCHC	4 cut(s)	234, 438, 444, 494
Bsp13I	TCCGGA	1 cut(s)	1936
Bsp143I	GATC	6 cut(s)	300, 814, 931, 1009, 1154, 1315
Bsp1720I	GCTNAGC	1 cut(s)	10
Bsp19I	CCATGG	1 cut(s)	1411
BspANI	GGCC	3 cut(s)	371, 429, 2079
BspCNI	CTCAG	3 cut(s)	23, 1999, 1999
BspEI	TCCGGA	1 cut(s)	1936
BspHI	TCATGA	2 cut(s)	1077, 1972
BspLI	GGNNCC	6 cut(s)	271, 480, 491, 907, 1657, 2080
BspPI	GGATC	1 cut(s)	926
BspQI	GCTCTTC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	1173
BspT107I	GGYRCC	1 cut(s)	269
BsrBI	CCGCTC	1 cut(s)	255
BsrDI	GCAATG	3 cut(s)	969, 1220, 1360
BsrFI	RCCGGY	3 cut(s)	202, 266, 425
BsrI	ACTGG	3 cut(s)	781, 1428, 1659
BssAI	RCCGGY	3 cut(s)	202, 266, 425
BssECI	CCNNGG	3 cut(s)	880, 1411, 1641
BssHII	GCGCGC	2 cut(s)	5, 236
BssMI	GATC	6 cut(s)	300, 814, 931, 1009, 1154, 1315
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	2 cut(s)	880, 1411
Bst2UI	CCWGG	4 cut(s)	153, 1254, 1683, 1752
Bst4CI	ACNGT	7 cut(s)	181, 551, 557, 657, 700, 1339, 1745
Bst6I	CTCTTC	2 cut(s)	53, 132
BstACI	GRCGYC	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	836
BstBAI	YACGTR	1 cut(s)	439
BstBI	TTCGAA	1 cut(s)	1173
BstDEI	CTNAG	5 cut(s)	10, 1893, 1961, 1986, 2007
BstDSI	CCRYGG	2 cut(s)	1411, 1641
BstEII	GGTNACC	1 cut(s)	2092
BstENI	CCTNNNNNAGG	4 cut(s)	900, 939, 1441, 2087
BstF5I	GGATG	5 cut(s)	547, 1213, 1504, 1807, 1945
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	9 cut(s)	7, 9, 171, 199, 238, 240, 272, 287, 718
BstKTI	GATC	6 cut(s)	303, 817, 934, 1012, 1157, 1318
BstMAI	GTCTC	3 cut(s)	252, 956, 1989
BstMBI	GATC	6 cut(s)	300, 814, 931, 1009, 1154, 1315
BstMCI	CGRYCG	1 cut(s)	393
BstNI	CCWGG	4 cut(s)	153, 1254, 1683, 1752
BstNSI	RCATGY	1 cut(s)	1913
BstPI	GGTNACC	1 cut(s)	2092
BstSCI	CCNGG	6 cut(s)	151, 183, 481, 1252, 1681, 1750
BstSFI	CTRYAG	2 cut(s)	1368, 1458
BstV1I	GCAGC	4 cut(s)	835, 851, 946, 1075
BstV2I	GAAGAC	3 cut(s)	346, 506, 1879
BstX2I	RGATCY	1 cut(s)	1009
BstYI	RGATCY	1 cut(s)	1009
BsuRI	GGCC	3 cut(s)	371, 429, 2079
BtgI	CCRYGG	2 cut(s)	1411, 1641
BtsCI	GGATG	5 cut(s)	547, 1213, 1504, 1807, 1945
BtsI	GCAGTG	1 cut(s)	1061
BtsIMutI	CAGTG	4 cut(s)	556, 1061, 1750, 1994
CciI	TCATGA	2 cut(s)	1077, 1972
CfoI	GCGC	9 cut(s)	7, 9, 171, 199, 238, 240, 272, 287, 718
Cfr10I	RCCGGY	3 cut(s)	202, 266, 425
Cfr13I	GGNCC	3 cut(s)	1568, 2042, 2078
Cfr42I	CCGCGG	1 cut(s)	1644
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	3 cut(s)	193, 1033, 1340
CspCI	CAANNNNNGTGG	2 cut(s)	1237, 1272
CviAII	CATG	9 cut(s)	797, 1078, 1103, 1262, 1319, 1412, 1687, 1910, 1973
CviQI	GTAC	3 cut(s)	193, 1033, 1340
DdeI	CTNAG	5 cut(s)	10, 1893, 1961, 1986, 2007
DinI	GGCGCC	1 cut(s)	271
DpnI	GATC	6 cut(s)	302, 816, 933, 1011, 1156, 1317
DpnII	GATC	6 cut(s)	300, 814, 931, 1009, 1154, 1315
DraIII	CACNNNGTG	2 cut(s)	806, 1745
DriI	GACNNNNNGTC	1 cut(s)	1981
EaeI	YGGCCR	1 cut(s)	427
Eam1104I	CTCTTC	2 cut(s)	53, 132
Eam1105I	GACNNNNNGTC	1 cut(s)	1981
EarI	CTCTTC	2 cut(s)	53, 132
EciI	GGCGGA	4 cut(s)	86, 491, 898, 997
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	2 cut(s)	880, 1411
Eco24I	GRGCYC	2 cut(s)	234, 494
Eco32I	GATATC	3 cut(s)	689, 1713, 1957
Eco47I	GGWCC	2 cut(s)	1568, 2042
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	998
Eco72I	CACGTG	1 cut(s)	439
Eco88I	CYCGRG	1 cut(s)	1450
Eco91I	GGTNACC	1 cut(s)	2092
EcoICRI	GAGCTC	1 cut(s)	232
EcoNI	CCTNNNNNAGG	4 cut(s)	900, 939, 1441, 2087
EcoO65I	GGTNACC	1 cut(s)	2092
EcoRI	GAATTC	2 cut(s)	212, 861
EcoRII	CCWGG	4 cut(s)	151, 1252, 1681, 1750
EcoRV	GATATC	3 cut(s)	689, 1713, 1957
EcoT14I	CCWWGG	2 cut(s)	880, 1411
EcoT38I	GRGCYC	2 cut(s)	234, 494
EgeI	GGCGCC	1 cut(s)	271
EheI	GGCGCC	1 cut(s)	271
ErhI	CCWWGG	2 cut(s)	880, 1411
FaeI	CATG	9 cut(s)	800, 1081, 1106, 1265, 1322, 1415, 1690, 1913, 1976
FalI	AAGNNNNNCTT	2 cut(s)	1827, 1859
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	9 cut(s)	796, 1077, 1102, 1261, 1318, 1411, 1686, 1909, 1972
FauI	CCCGC	2 cut(s)	266, 479
FauNDI	CATATG	1 cut(s)	1513
FbaI	TGATCA	1 cut(s)	1315
FblI	GTMKAC	2 cut(s)	1629, 1722
Fnu4HI	GCNGC	7 cut(s)	200, 423, 840, 849, 960, 1089, 1365
FokI	GGATG	5 cut(s)	554, 1220, 1511, 1794, 1952
FriOI	GRGCYC	2 cut(s)	234, 494
Fsp4HI	GCNGC	7 cut(s)	200, 423, 840, 849, 960, 1089, 1365
FspBI	CTAG	6 cut(s)	713, 804, 881, 1020, 1391, 1815
GlaI	GCGC	9 cut(s)	6, 8, 170, 198, 237, 239, 271, 286, 717
GluI	GCNGC	7 cut(s)	200, 423, 840, 849, 960, 1089, 1365
GsaI	CCCAGC	2 cut(s)	451, 959
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	371, 429, 2079
HapII	CCGG	7 cut(s)	185, 203, 267, 339, 426, 482, 1937
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	9 cut(s)	7, 9, 171, 199, 238, 240, 272, 287, 718
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	9 cut(s)	800, 1081, 1106, 1265, 1322, 1415, 1690, 1913, 1976
Hin6I	GCGC	9 cut(s)	5, 7, 169, 197, 236, 238, 270, 285, 716
HinP1I	GCGC	9 cut(s)	5, 7, 169, 197, 236, 238, 270, 285, 716
HindIII	AAGCTT	1 cut(s)	1841
HinfI	GANTC	5 cut(s)	311, 327, 351, 385, 1378
HpaII	CCGG	7 cut(s)	185, 203, 267, 339, 426, 482, 1937
HphI	GGTGA	6 cut(s)	43, 94, 166, 896, 956, 2086
Hpy166II	GTNNAC	5 cut(s)	547, 809, 1406, 1630, 1723
Hpy188I	TCNGA	5 cut(s)	211, 390, 693, 823, 877
Hpy8I	GTNNAC	5 cut(s)	547, 809, 1406, 1630, 1723
Hpy99I	CGWCG	2 cut(s)	308, 422
HpyAV	CCTTC	9 cut(s)	64, 85, 574, 989, 1457, 1497, 1647, 1899, 1988
HpyCH4III	ACNGT	7 cut(s)	181, 551, 557, 657, 700, 1339, 1745
HpyCH4IV	ACGT	2 cut(s)	438, 1324
HpyF3I	CTNAG	5 cut(s)	10, 1893, 1961, 1986, 2007
HpySE526I	ACGT	2 cut(s)	438, 1324
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	9 cut(s)	800, 1081, 1106, 1265, 1322, 1415, 1690, 1913, 1976
HspAI	GCGC	9 cut(s)	5, 7, 169, 197, 236, 238, 270, 285, 716
KasI	GGCGCC	1 cut(s)	269
Kpn2I	TCCGGA	1 cut(s)	1936
KroI	GCCGGC	3 cut(s)	202, 266, 425
KroNI	GCCGGC	3 cut(s)	204, 268, 427
Ksp22I	TGATCA	1 cut(s)	1315
KspI	CCGCGG	1 cut(s)	1644
Kzo9I	GATC	6 cut(s)	300, 814, 931, 1009, 1154, 1315
LguI	GCTCTTC	1 cut(s)	53
LmnI	GCTCC	7 cut(s)	19, 260, 478, 489, 706, 911, 1243
Lsp1109I	GCAGC	4 cut(s)	835, 851, 946, 1075
LweI	GCATC	1 cut(s)	1068
MaeI	CTAG	6 cut(s)	713, 804, 881, 1020, 1391, 1815
MaeII	ACGT	2 cut(s)	438, 1324
MaeIII	GTNAC	5 cut(s)	163, 172, 551, 1879, 2092
MalI	GATC	6 cut(s)	302, 816, 933, 1011, 1156, 1317
MbiI	CCGCTC	1 cut(s)	255
MboI	GATC	6 cut(s)	300, 814, 931, 1009, 1154, 1315
MflI	RGATCY	1 cut(s)	1009
MhlI	GDGCHC	4 cut(s)	234, 438, 444, 494
Mly113I	GGCGCC	1 cut(s)	270
MlyI	GAGTC	3 cut(s)	360, 394, 1372
MmeI	TCCRAC	3 cut(s)	413, 1189, 1932
MreI	CGCCGGCG	1 cut(s)	266
MroI	TCCGGA	1 cut(s)	1936
MroNI	GCCGGC	3 cut(s)	202, 266, 425
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	6 cut(s)	1143, 1470, 1694, 1701, 1800, 1863
MspA1I	CMGCKG	3 cut(s)	959, 1193, 1643
MspI	CCGG	7 cut(s)	185, 203, 267, 339, 426, 482, 1937
MspR9I	CCNGG	6 cut(s)	153, 185, 483, 1254, 1683, 1752
Mva1269I	GAATGC	2 cut(s)	782, 1772
MvaI	CCWGG	4 cut(s)	153, 1254, 1683, 1752
NaeI	GCCGGC	3 cut(s)	204, 268, 427
NarI	GGCGCC	1 cut(s)	270
NciI	CCSGG	2 cut(s)	185, 483
NcoI	CCATGG	1 cut(s)	1411
NdeI	CATATG	1 cut(s)	1513
NdeII	GATC	6 cut(s)	300, 814, 931, 1009, 1154, 1315
NgoMIV	GCCGGC	3 cut(s)	202, 266, 425
NlaIII	CATG	9 cut(s)	800, 1081, 1106, 1265, 1322, 1415, 1690, 1913, 1976
NlaIV	GGNNCC	6 cut(s)	271, 480, 491, 907, 1657, 2080
NmeAIII	GCCGAG	2 cut(s)	423, 490
NmuCI	GTSAC	4 cut(s)	163, 172, 551, 2092
NspI	RCATGY	1 cut(s)	1913
NspV	TTCGAA	1 cut(s)	1173
PaeI	GCATGC	1 cut(s)	1913
PagI	TCATGA	2 cut(s)	1077, 1972
PauI	GCGCGC	2 cut(s)	5, 236
PciSI	GCTCTTC	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PctI	GAATGC	2 cut(s)	782, 1772
PdiI	GCCGGC	3 cut(s)	204, 268, 427
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	2 cut(s)	311, 327
PflMI	CCANNNNNTGG	1 cut(s)	787
PkrI	GCNGC	7 cut(s)	201, 424, 841, 850, 961, 1090, 1366
PleI	GAGTC	3 cut(s)	359, 393, 1372
PluTI	GGCGCC	1 cut(s)	273
PmaCI	CACGTG	1 cut(s)	439
PmlI	CACGTG	1 cut(s)	439
PpsI	GAGTC	3 cut(s)	359, 393, 1372
Ppu21I	YACGTR	1 cut(s)	439
PshBI	ATTAAT	1 cut(s)	1470
PsiI	TTATAA	2 cut(s)	1004, 1824
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	4 cut(s)	151, 1252, 1681, 1750
PspCI	CACGTG	1 cut(s)	439
PspEI	GGTNACC	1 cut(s)	2092
PspFI	CCCAGC	2 cut(s)	447, 955
PspGI	CCWGG	4 cut(s)	151, 1252, 1681, 1750
PspN4I	GGNNCC	6 cut(s)	271, 480, 491, 907, 1657, 2080
PspPI	GGNCC	3 cut(s)	1568, 2042, 2078
PsuI	RGATCY	1 cut(s)	1009
PteI	GCGCGC	2 cut(s)	5, 236
PvuII	CAGCTG	2 cut(s)	959, 1193
RsaI	GTAC	3 cut(s)	194, 1034, 1341
RsaNI	GTAC	3 cut(s)	193, 1033, 1340
SacI	GAGCTC	1 cut(s)	234
SacII	CCGCGG	1 cut(s)	1644
SapI	GCTCTTC	1 cut(s)	53
SaqAI	TTAA	6 cut(s)	1143, 1470, 1694, 1701, 1800, 1863
SatI	GCNGC	7 cut(s)	200, 423, 840, 849, 960, 1089, 1365
Sau3AI	GATC	6 cut(s)	300, 814, 931, 1009, 1154, 1315
Sau96I	GGNCC	3 cut(s)	1568, 2042, 2078
SchI	GAGTC	3 cut(s)	360, 394, 1372
ScrFI	CCNGG	6 cut(s)	153, 185, 483, 1254, 1683, 1752
SduI	GDGCHC	4 cut(s)	234, 438, 444, 494
SfaNI	GCATC	1 cut(s)	1068
SfcI	CTRYAG	2 cut(s)	1368, 1458
SfoI	GGCGCC	1 cut(s)	271
Sfr303I	CCGCGG	1 cut(s)	1644
SfuI	TTCGAA	1 cut(s)	1173
SgrAI	CRCCGGYG	1 cut(s)	266
SgrBI	CCGCGG	1 cut(s)	1644
SinI	GGWCC	2 cut(s)	1568, 2042
SmlI	CTYRAG	2 cut(s)	242, 843
SmoI	CTYRAG	2 cut(s)	242, 843
SphI	GCATGC	1 cut(s)	1913
SspDI	GGCGCC	1 cut(s)	269
SspI	AATATT	1 cut(s)	1783
SspMI	CTAG	6 cut(s)	713, 804, 881, 1020, 1391, 1815
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	6 cut(s)	151, 183, 481, 1252, 1681, 1750
StyI	CCWWGG	2 cut(s)	880, 1411
TaaI	ACNGT	7 cut(s)	181, 551, 557, 657, 700, 1339, 1745
TaiI	ACGT	2 cut(s)	441, 1327
TaqI	TCGA	6 cut(s)	216, 303, 722, 1153, 1173, 2113
TaqII	GACCGA	1 cut(s)	407
TatI	WGTACW	1 cut(s)	1032
TauI	GCSGC	3 cut(s)	202, 425, 1367
TfiI	GAWTC	2 cut(s)	311, 327
Tru1I	TTAA	6 cut(s)	1143, 1470, 1694, 1701, 1800, 1863
Tru9I	TTAA	6 cut(s)	1143, 1470, 1694, 1701, 1800, 1863
TscAI	CASTG	4 cut(s)	556, 1061, 1750, 1994
TseFI	GTSAC	4 cut(s)	163, 172, 551, 2092
TseI	GCWGC	4 cut(s)	839, 848, 959, 1088
Tsp45I	GTSAC	4 cut(s)	163, 172, 551, 2092
TspDTI	ATGAA	3 cut(s)	618, 785, 1119
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	4 cut(s)	556, 1061, 1750, 1994
Van91I	CCANNNNNTGG	1 cut(s)	787
VpaK11BI	GGWCC	2 cut(s)	1568, 2042
VspI	ATTAAT	1 cut(s)	1470
XagI	CCTNNNNNAGG	4 cut(s)	900, 939, 1441, 2087
XapI	RAATTY	7 cut(s)	212, 637, 792, 861, 888, 1550, 2035
XbaI	TCTAGA	1 cut(s)	1814
XceI	RCATGY	1 cut(s)	1913
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1937
XmaJI	CCTAGG	1 cut(s)	880
XmiI	GTMKAC	2 cut(s)	1629, 1722
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	6 cut(s)	713, 804, 881, 1020, 1391, 1815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.