AT3G56820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011346
Physical Location & Seq
Reverse (-)
21039745 .. 21041760
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56820.1

Sequence Viewer

Length: 663 bp
ATGGCAAACCCTAGAAGAGTAGTGATCGAGAACCAGAGATTGTCACCTTTAATCAACCTACTGAAGAAGCCTCAAGCGATTCCTCTGCTTCTCTCGTTGTTCCTCTTGCTCACATGGATCTCCCTCAGGTTACAACACTCTTCACAATCACACGTCTCTTCGTCCTCTTCACATCCGAAATCGACGGTAAATAGTCATCCCGATTTGAAAGTTTACGACGACGACGATAAGGCTAATTTGGTCCGGTTCGGTTTGGCGTCGCTTTCTCCTGCTCGGAAAGACGACCGTGGTTGGTTGCTTGATCCCGTTATCCTTGCTCGTGATTCTGAGCTCAAAGGTGGAGCCGCATCGTGTGTTTCCATTCATGTTGGTGAAATACGGCCTGGTGGATTGAGGGGAAACCATAGACACCATACCTGTAATGAGACGTTTGTCATATGGGGAGCCAAGACAAAATTCAGGCTGGAAAACCACGAAGTCGATAAAGGTTACGCCGAAGTGTTAATTGGAGAGGATGAGGTAGCTGTAGCTGTTAGTCAGAGTGGCACGGCTCATGCTCTAGTAAATGTAGATCCTGTGCGTTCTACTTTCTTCATAGGCTGCCAAGACCATATGCAGAACAACAGCTCAACTAGCGACTACAAAGTATGGAATGATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

24.37

Weight (kDa)

7.19

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56820 AT3G56820 AT3G56820
fragaria_vesca FvH4_1g29600 FvH4_1g29600 FvH4_1g29600 FvH4_1g29600
malus_domestica MD12G1111100.v1.1
prunus_persica Prupe.7G023500_v2.0.a1 Prupe.7G023500_v2.0.a1
pyrus_communis pycom12g09330
rosa_chinensis RchiOBHm_Chr7g0183121
rosa_laevigata RLG00000005077
rosa_multiflora Rmu_ssc0000111.1_g000009
rosa_roxburghii Rroxscaffold_3G00270740
rosa_rugosa Rorug06G0453300
rosa_samantha Rh7AG056300 Rh7BG055600 Rh7DG055800
rosa_wichuraiana Rw7G004590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 345
AclWI GGATC 3 cut(s) 125, 296, 566
AcsI RAATTY 1 cut(s) 455
AcuI CTGAAG 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 257
AflIII ACRYGT 1 cut(s) 151
AgsI TTSAA 1 cut(s) 208
AjiI CACGTC 1 cut(s) 154
AjnI CCWGG 1 cut(s) 382
AjuI GAANNNNNNNTTGG 4 cut(s) 440, 472, 489, 521
AluBI AGCT 4 cut(s) 331, 524, 530, 627
AluI AGCT 4 cut(s) 331, 524, 530, 627
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 2 cut(s) 160, 419
AlwI GGATC 3 cut(s) 125, 296, 566
AoxI GGCC 1 cut(s) 380
ApeKI GCWGC 1 cut(s) 600
ApoI RAATTY 1 cut(s) 455
AspS9I GGNCC 1 cut(s) 241
AsuHPI GGTGA 2 cut(s) 36, 383
AvaII GGWCC 1 cut(s) 241
AxyI CCTNAGG 1 cut(s) 125
BanII GRGCYC 1 cut(s) 333
BauI CACGAG 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 587
BceAI ACGGC 2 cut(s) 395, 564
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BciT130I CCWGG 1 cut(s) 384
BcoDI GTCTC 2 cut(s) 160, 419
BfaI CTAG 3 cut(s) 12, 560, 633
BfmI CTRYAG 1 cut(s) 525
BisI GCNGC 2 cut(s) 345, 601
BlsI GCNGC 2 cut(s) 346, 602
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 1 cut(s) 241
BmgBI CACGTC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 2 cut(s) 343, 445
BmrFI CCNGG 1 cut(s) 384
BmsI GCATC 1 cut(s) 356
BoxI GACNNNNGTC 1 cut(s) 431
BpuEI CTTGAG 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 286
BsaWI WCCGGW 1 cut(s) 243
Bse21I CCTNAGG 1 cut(s) 125
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 3 cut(s) 172, 196, 520
BseMII CTCAG 2 cut(s) 139, 318
BseXI GCAGC 1 cut(s) 587
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 1 cut(s) 382
BsiEI CGRYCG 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 1 cut(s) 244
BsmAI GTCTC 2 cut(s) 160, 419
BsmBI CGTCTC 2 cut(s) 160, 419
BsnI GGCC 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 5 cut(s) 24, 117, 301, 571, 655
BspACI CCGC 1 cut(s) 345
BspANI GGCC 1 cut(s) 382
BspCNI CTCAG 2 cut(s) 138, 319
BspLI GGNNCC 2 cut(s) 343, 445
BspPI GGATC 3 cut(s) 125, 296, 566
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 5 cut(s) 24, 117, 301, 571, 655
BssNI GRCGYC 1 cut(s) 257
BssSI CACGAG 1 cut(s) 318
Bst2BI CACGAG 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 2 cut(s) 187, 287
Bst6I CTCTTC 4 cut(s) 10, 145, 163, 172
BstACI GRCGYC 1 cut(s) 257
BstDEI CTNAG 2 cut(s) 125, 327
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 3 cut(s) 172, 196, 520
BstKTI GATC 5 cut(s) 27, 120, 304, 574, 658
BstMAI GTCTC 2 cut(s) 160, 419
BstMBI GATC 5 cut(s) 24, 117, 301, 571, 655
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 1 cut(s) 633
BstNI CCWGG 1 cut(s) 384
BstPAI GACNNNNGTC 1 cut(s) 431
BstSCI CCNGG 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 525
BstV1I GCAGC 1 cut(s) 587
BstX2I RGATCY 2 cut(s) 117, 571
BstYI RGATCY 2 cut(s) 117, 571
Bsu36I CCTNAGG 1 cut(s) 125
BsuRI GGCC 1 cut(s) 382
BtgI CCRYGG 1 cut(s) 286
BtrI CACGTC 1 cut(s) 154
BtsCI GGATG 3 cut(s) 172, 196, 520
Cfr13I GGNCC 1 cut(s) 241
CseI GACGC 1 cut(s) 246
CviAII CATG 3 cut(s) 114, 365, 554
DdeI CTNAG 2 cut(s) 125, 327
DpnI GATC 5 cut(s) 26, 119, 303, 573, 657
DpnII GATC 5 cut(s) 24, 117, 301, 571, 655
Eam1104I CTCTTC 4 cut(s) 10, 145, 163, 172
EarI CTCTTC 4 cut(s) 10, 145, 163, 172
Ecl136II GAGCTC 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 83
Eco81I CCTNAGG 1 cut(s) 125
EcoICRI GAGCTC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 382
EcoT38I GRGCYC 1 cut(s) 333
Esp3I CGTCTC 2 cut(s) 160, 419
FaeI CATG 3 cut(s) 117, 368, 557
FatI CATG 3 cut(s) 113, 364, 553
FauNDI CATATG 2 cut(s) 437, 612
Fnu4HI GCNGC 2 cut(s) 345, 601
FokI GGATG 3 cut(s) 159, 183, 527
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 2 cut(s) 345, 601
FspBI CTAG 3 cut(s) 12, 560, 633
GluI GCNGC 2 cut(s) 345, 601
HaeIII GGCC 1 cut(s) 382
HapII CCGG 1 cut(s) 244
HgaI GACGC 1 cut(s) 246
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 3 cut(s) 117, 368, 557
HinfI GANTC 2 cut(s) 79, 323
HpaII CCGG 1 cut(s) 244
HphI GGTGA 2 cut(s) 36, 383
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 4 cut(s) 177, 276, 328, 540
Hpy188III TCNNGA 3 cut(s) 28, 200, 320
Hpy8I GTNNAC 1 cut(s) 214
Hpy99I CGWCG 5 cut(s) 187, 221, 224, 227, 262
HpyCH4III ACNGT 2 cut(s) 187, 287
HpyCH4IV ACGT 2 cut(s) 153, 428
HpyCH4V TGCA 1 cut(s) 616
HpyF10VI GCNNNNNNNGC 1 cut(s) 633
HpyF3I CTNAG 2 cut(s) 125, 327
HpySE526I ACGT 2 cut(s) 153, 428
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 3 cut(s) 117, 368, 557
Kzo9I GATC 5 cut(s) 24, 117, 301, 571, 655
LmnI GCTCC 2 cut(s) 341, 443
Lsp1109I GCAGC 1 cut(s) 587
LweI GCATC 1 cut(s) 356
MaeI CTAG 3 cut(s) 12, 560, 633
MaeII ACGT 2 cut(s) 153, 428
MaeIII GTNAC 3 cut(s) 42, 129, 488
MalI GATC 5 cut(s) 26, 119, 303, 573, 657
MboI GATC 5 cut(s) 24, 117, 301, 571, 655
MboII GAAGA 6 cut(s) 27, 76, 132, 150, 159, 583
MflI RGATCY 2 cut(s) 117, 571
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 3 cut(s) 235, 455, 504
MnlI CCTC 8 cut(s) 81, 93, 113, 134, 175, 387, 505, 511
MseI TTAA 2 cut(s) 50, 503
MslI CAYNNNNRTG 1 cut(s) 369
MspI CCGG 1 cut(s) 244
MspR9I CCNGG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 633
NdeI CATATG 2 cut(s) 437, 612
NdeII GATC 5 cut(s) 24, 117, 301, 571, 655
NlaIII CATG 3 cut(s) 117, 368, 557
NlaIV GGNNCC 2 cut(s) 343, 445
NmuCI GTSAC 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 2 cut(s) 79, 323
PkrI GCNGC 2 cut(s) 346, 602
PshAI GACNNNNGTC 1 cut(s) 431
Psp124BI GAGCTC 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 2 cut(s) 343, 445
PspPI GGNCC 1 cut(s) 241
PsuI RGATCY 2 cut(s) 117, 571
RseI CAYNNNNRTG 1 cut(s) 369
SacI GAGCTC 1 cut(s) 333
SaqAI TTAA 2 cut(s) 50, 503
SatI GCNGC 2 cut(s) 345, 601
Sau3AI GATC 5 cut(s) 24, 117, 301, 571, 655
Sau96I GGNCC 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 1 cut(s) 333
SfaNI GCATC 1 cut(s) 356
SfcI CTRYAG 1 cut(s) 525
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
Sse9I AATT 3 cut(s) 235, 455, 504
SsiI CCGC 1 cut(s) 345
SspMI CTAG 3 cut(s) 12, 560, 633
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 382
TaaI ACNGT 2 cut(s) 187, 287
TaiI ACGT 2 cut(s) 156, 431
TaqI TCGA 3 cut(s) 27, 182, 480
TasI AATT 3 cut(s) 235, 455, 504
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 2 cut(s) 79, 323
Tru1I TTAA 2 cut(s) 50, 503
Tru9I TTAA 2 cut(s) 50, 503
TseFI GTSAC 1 cut(s) 42
TseI GCWGC 1 cut(s) 600
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 353, 583
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 1 cut(s) 455
XspI CTAG 3 cut(s) 12, 560, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.