RchiOBHm_Chr7g0183121

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011346
Physical Location & Seq
Forward (+)
4141383 .. 4142269
887 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16336

Sequence Viewer

Length: 789 bp
ATGACCATATCCTATGTGCAATGTCAAAGGAGTATTGAGAAGCGAATTCGACAAGACAGAGCGGAGGAAGTGATGGCAAACCCCAGAAGGAACAGCCAGAGCTTAGAGAACCCATTTCATGGTCAAAGCCAAAGCCAAAGCCAAAGCCGAAGCCTAAGCCTAAACCAAAGCGTTTCATGGTCATCACTTGTACACTTTCTGAAGAAGCCCCATGCCTTGCCTTTTCTGCTCTCAATCTTCCTTCTGCTTACATGGGTCTCTCTCAGGCTCCAGCACTCCTCGTCCTCTCCTCATTCTCATAATATCAATACACCATTACAGAAGAGCATCAAGGACGACAGCAAGGCCAATCTCGTTAGGTTCGGTTCTGGGTTCCCCTCTCGGATTGCAAAAGATAAGCGGGGATGGTTGCTCGACCCCATTTCCCTTGCCCAACAATCTGGCATTTTGGGTGGAGCTGTGATTTGTGCTTCAATCCATCTTGGAGAAATCCGGCCTGGTGCTTTAAGGGGAAACCACAGACACCATTCTTGTAATGAAACGTTTGTCATATGGGGAGCAGAAACAAGGTTTAGGCTGGAGAATGATGAGGTAGATGATAAGGGTTACGCTGAAGTCACCATTGCTGCAGATGAGGTTGCTGTTGCAGCTAGTCGAAGCGGAACTGCCCACGCTTTAATAAACATAGATCCGGTTCGGACCACGTACTTCATAGGGTGCCAGGACAGTGTCATAGATTATAACAGCTCAAGTACTGATTTTAATGTCTGGGAAAGTCTTAAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

29.24

Weight (kDa)

8.71

Isoelectric Point (pI)

59.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polysacc_synt_C PF14667 160 - 231 9.7e-06 Polysaccharide biosynthesis C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56820 AT3G56820 AT3G56820
fragaria_vesca FvH4_1g29600 FvH4_1g29600 FvH4_1g29600 FvH4_1g29600
malus_domestica MD12G1111100.v1.1
prunus_persica Prupe.7G023500_v2.0.a1 Prupe.7G023500_v2.0.a1
pyrus_communis pycom12g09330
rosa_chinensis RchiOBHm_Chr7g0183121
rosa_laevigata RLG00000005077
rosa_multiflora Rmu_ssc0000111.1_g000009
rosa_roxburghii Rroxscaffold_3G00270740
rosa_rugosa Rorug06G0453300
rosa_samantha Rh7AG056300 Rh7BG055600 Rh7DG055800
rosa_wichuraiana Rw7G004590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 741
AccB1I GGYRCC 1 cut(s) 717
AccB7I CCANNNNNTGG 1 cut(s) 119
AccBSI CCGCTC 1 cut(s) 62
AciI CCGC 3 cut(s) 62, 400, 660
AclI AACGTT 1 cut(s) 542
AclWI GGATC 1 cut(s) 683
AcsI RAATTY 1 cut(s) 45
AcuI CTGAAG 2 cut(s) 221, 633
AfaI GTAC 3 cut(s) 192, 707, 754
AfiI CCNNNNNNNGG 1 cut(s) 119
AflII CTTAAG 1 cut(s) 779
AgsI TTSAA 1 cut(s) 474
AjnI CCWGG 2 cut(s) 496, 720
AluBI AGCT 4 cut(s) 102, 458, 650, 747
AluI AGCT 4 cut(s) 102, 458, 650, 747
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 1 cut(s) 683
AoxI GGCC 2 cut(s) 345, 494
ApeKI GCWGC 2 cut(s) 626, 647
ApoI RAATTY 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 699
AsuHPI GGTGA 1 cut(s) 610
AvaII GGWCC 1 cut(s) 699
BanI GGYRCC 1 cut(s) 717
BbvI GCAGC 2 cut(s) 613, 659
BccI CCATC 3 cut(s) 67, 399, 486
BciT130I CCWGG 2 cut(s) 498, 722
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 1 cut(s) 651
BfmI CTRYAG 1 cut(s) 627
BfrI CTTAAG 1 cut(s) 779
BisI GCNGC 2 cut(s) 627, 648
BlsI GCNGC 2 cut(s) 628, 649
BmcAI AGTACT 1 cut(s) 754
Bme1390I CCNGG 2 cut(s) 498, 722
Bme18I GGWCC 1 cut(s) 699
BmgT120I GGNCC 1 cut(s) 699
BmiI GGNNCC 3 cut(s) 269, 374, 719
BmrFI CCNGG 2 cut(s) 498, 722
BmsI GCATC 1 cut(s) 336
BpmI CTGGAG 2 cut(s) 254, 599
Bpu10I CCTNAGC 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 733
BsaAI YACGTR 1 cut(s) 705
BsaI GGTCTC 1 cut(s) 262
BsaWI WCCGGW 1 cut(s) 691
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse3DI GCAATG 2 cut(s) 26, 621
BseBI CCWGG 2 cut(s) 498, 722
BseGI GGATG 1 cut(s) 410
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 2 cut(s) 26, 621
BseMII CTCAG 1 cut(s) 277
BseRI GAGGAG 2 cut(s) 268, 279
BseXI GCAGC 2 cut(s) 613, 659
BshFI GGCC 2 cut(s) 347, 496
BshNI GGYRCC 1 cut(s) 717
BsiSI CCGG 2 cut(s) 493, 692
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 262
BsnI GGCC 2 cut(s) 347, 496
Bso31I GGTCTC 1 cut(s) 262
Bsp1407I TGTACA 1 cut(s) 190
Bsp143I GATC 1 cut(s) 688
BspACI CCGC 3 cut(s) 62, 400, 660
BspANI GGCC 2 cut(s) 347, 496
BspCNI CTCAG 1 cut(s) 276
BspLI GGNNCC 3 cut(s) 269, 374, 719
BspMAI CTGCAG 1 cut(s) 631
BspPI GGATC 1 cut(s) 683
BspQI GCTCTTC 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 717
BspTI CTTAAG 1 cut(s) 779
BspTNI GGTCTC 1 cut(s) 262
BsrBI CCGCTC 1 cut(s) 62
BsrDI GCAATG 2 cut(s) 26, 621
BsrGI TGTACA 1 cut(s) 190
BssMI GATC 1 cut(s) 688
Bst2UI CCWGG 2 cut(s) 498, 722
Bst4CI ACNGT 1 cut(s) 728
Bst6I CTCTTC 1 cut(s) 317
BstAFI CTTAAG 1 cut(s) 779
BstAUI TGTACA 1 cut(s) 190
BstBAI YACGTR 1 cut(s) 705
BstDEI CTNAG 3 cut(s) 103, 155, 263
BstF5I GGATG 1 cut(s) 410
BstKTI GATC 1 cut(s) 691
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 1 cut(s) 688
BstMWI GCNNNNNNNGC 2 cut(s) 226, 647
BstNI CCWGG 2 cut(s) 498, 722
BstSCI CCNGG 2 cut(s) 496, 720
BstSFI CTRYAG 1 cut(s) 627
BstV1I GCAGC 2 cut(s) 613, 659
BstX2I RGATCY 1 cut(s) 688
BstXI CCANNNNNNTGG 1 cut(s) 440
BstYI RGATCY 1 cut(s) 688
BsuRI GGCC 2 cut(s) 347, 496
BtsCI GGATG 1 cut(s) 410
BtsIMutI CAGTG 1 cut(s) 733
Cfr13I GGNCC 1 cut(s) 699
Csp6I GTAC 3 cut(s) 191, 706, 753
CviAII CATG 4 cut(s) 119, 177, 212, 252
CviQI GTAC 3 cut(s) 191, 706, 753
DdeI CTNAG 3 cut(s) 103, 155, 263
DpnI GATC 1 cut(s) 690
DpnII GATC 1 cut(s) 688
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco31I GGTCTC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 699
Eco57I CTGAAG 2 cut(s) 221, 633
EcoRI GAATTC 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 496, 720
FaeI CATG 4 cut(s) 122, 180, 215, 255
FatI CATG 4 cut(s) 118, 176, 211, 251
FauI CCCGC 1 cut(s) 393
FauNDI CATATG 1 cut(s) 551
Fnu4HI GCNGC 2 cut(s) 627, 648
FokI GGATG 1 cut(s) 417
Fsp4HI GCNGC 2 cut(s) 627, 648
FspBI CTAG 1 cut(s) 651
GluI GCNGC 2 cut(s) 627, 648
GsuI CTGGAG 2 cut(s) 254, 599
HaeIII GGCC 2 cut(s) 347, 496
HapII CCGG 2 cut(s) 493, 692
Hin1II CATG 4 cut(s) 122, 180, 215, 255
HpaII CCGG 2 cut(s) 493, 692
HphI GGTGA 1 cut(s) 610
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 3 cut(s) 201, 384, 699
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 81, 251
HpyCH4III ACNGT 1 cut(s) 728
HpyCH4IV ACGT 2 cut(s) 542, 704
HpyCH4V TGCA 4 cut(s) 19, 389, 629, 647
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 647
HpyF3I CTNAG 3 cut(s) 103, 155, 263
HpySE526I ACGT 2 cut(s) 542, 704
Hsp92II CATG 4 cut(s) 122, 180, 215, 255
Kzo9I GATC 1 cut(s) 688
LguI GCTCTTC 1 cut(s) 317
LmnI GCTCC 3 cut(s) 273, 455, 557
Lsp1109I GCAGC 2 cut(s) 613, 659
LweI GCATC 1 cut(s) 336
MaeI CTAG 1 cut(s) 651
MaeII ACGT 2 cut(s) 542, 704
MaeIII GTNAC 2 cut(s) 605, 616
MalI GATC 1 cut(s) 690
MbiI CCGCTC 1 cut(s) 62
MboI GATC 1 cut(s) 688
MboII GAAGA 3 cut(s) 214, 229, 334
MflI RGATCY 1 cut(s) 688
MluCI AATT 1 cut(s) 45
MnlI CCTC 7 cut(s) 58, 289, 295, 300, 388, 583, 628
MseI TTAA 4 cut(s) 506, 677, 762, 780
MspCI CTTAAG 1 cut(s) 779
MspI CCGG 2 cut(s) 493, 692
MspR9I CCNGG 2 cut(s) 498, 722
MvaI CCWGG 2 cut(s) 498, 722
MwoI GCNNNNNNNGC 2 cut(s) 226, 647
NdeI CATATG 1 cut(s) 551
NdeII GATC 1 cut(s) 688
NlaIII CATG 4 cut(s) 122, 180, 215, 255
NlaIV GGNNCC 3 cut(s) 269, 374, 719
NmuCI GTSAC 1 cut(s) 616
PciSI GCTCTTC 1 cut(s) 317
PflFI GACNNNGTC 1 cut(s) 728
PflMI CCANNNNNTGG 1 cut(s) 119
PkrI GCNGC 2 cut(s) 628, 649
Ppu21I YACGTR 1 cut(s) 705
PsiI TTATAA 1 cut(s) 741
Psp1406I AACGTT 1 cut(s) 542
Psp6I CCWGG 2 cut(s) 496, 720
PspGI CCWGG 2 cut(s) 496, 720
PspN4I GGNNCC 3 cut(s) 269, 374, 719
PspPI GGNCC 1 cut(s) 699
PstI CTGCAG 1 cut(s) 631
PsuI RGATCY 1 cut(s) 688
PsyI GACNNNGTC 1 cut(s) 728
RsaI GTAC 3 cut(s) 192, 707, 754
RsaNI GTAC 3 cut(s) 191, 706, 753
SapI GCTCTTC 1 cut(s) 317
SaqAI TTAA 4 cut(s) 506, 677, 762, 780
SatI GCNGC 2 cut(s) 627, 648
Sau3AI GATC 1 cut(s) 688
Sau96I GGNCC 1 cut(s) 699
ScaI AGTACT 1 cut(s) 754
ScrFI CCNGG 2 cut(s) 498, 722
SfaNI GCATC 1 cut(s) 336
SfcI CTRYAG 1 cut(s) 627
SinI GGWCC 1 cut(s) 699
SmlI CTYRAG 2 cut(s) 748, 779
SmoI CTYRAG 2 cut(s) 748, 779
Sse9I AATT 1 cut(s) 45
SsiI CCGC 3 cut(s) 62, 400, 660
SspMI CTAG 1 cut(s) 651
StyD4I CCNGG 2 cut(s) 496, 720
TaaI ACNGT 1 cut(s) 728
TaiI ACGT 2 cut(s) 545, 707
TaqI TCGA 3 cut(s) 49, 414, 655
TasI AATT 1 cut(s) 45
TatI WGTACW 2 cut(s) 190, 752
Tru1I TTAA 4 cut(s) 506, 677, 762, 780
Tru9I TTAA 4 cut(s) 506, 677, 762, 780
TscAI CASTG 1 cut(s) 733
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 2 cut(s) 626, 647
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 4 cut(s) 107, 165, 552, 700
TspRI CASTG 1 cut(s) 733
Tth111I GACNNNGTC 1 cut(s) 728
Van91I CCANNNNNTGG 1 cut(s) 119
Vha464I CTTAAG 1 cut(s) 779
VpaK11BI GGWCC 1 cut(s) 699
XapI RAATTY 1 cut(s) 45
XspI CTAG 1 cut(s) 651
ZrmI AGTACT 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.