Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011346

Physical Location & Seq

Genomic Coordinates Reverse (-)

22847193 .. 22849420

Gene Structure 2228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g29600.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCAAACCCTAGAAGGAACAGCCAGAGCTCAGAAAACCCATTCCACATCCAAAGCCGAAGTTTAAGCCTAAATCTAAGCGTTTCATGGTCATCACTAGTACTCTTTCTGAAGAAGCCCCATGCCTTGCCTTTTCTGCTCTCAATCTTCCTTTTGCTTACATGGGTCTCTCTGAGGCTCCAGCACTCGTCCTCTCTTCATTCTCCTAATCTCAGTAAACCATTAGAAAAGAATATCAAGGACGACGGCAAAGCCAATCTCGTTAGATTCGGTTCTGGGTTCCCTTCTCAGATTGCAAAAGATAAGAGGGGATGGTTGCTCGACCCCATTTCCCTTGCCCAACACTATGGCATTTCTGGTGGAGCTGTTATTTGTGCTTCAGTCCATCTTGGAGAAGTCCGGCCTGGAGGTTTAAGGGGAAACCACAGACACCATTCTTGTAATGAAACATTTGTCATATGGGGAGCAGAAACAAGGTTTAGGCTGGAGAACAGTAAGGTAGATGATAAAGGTTATGCTGAAGTCACAATTGGTGCAGATGAGGTTGCTGTTGCAGCTAGTCGAAGCGGAACTGCCCATGCTATAATAAACATAGATCCGGTACGGACGGCATACTTTATAGGGTGCCAAGACAGTGTCATAGACTACAACAGCTCAAGTACTGATTTTAATGTCTGGGATAGTCTTAAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

25.46

Weight (kDa)

9.03

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56820 AT3G56820 AT3G56820
fragaria_vesca	FvH4_1g29600 FvH4_1g29600 FvH4_1g29600 FvH4_1g29600
malus_domestica	MD12G1111100.v1.1
prunus_persica	Prupe.7G023500_v2.0.a1 Prupe.7G023500_v2.0.a1
pyrus_communis	pycom12g09330
rosa_chinensis	RchiOBHm_Chr7g0183121
rosa_laevigata	RLG00000005077
rosa_multiflora	Rmu_ssc0000111.1_g000009
rosa_roxburghii	Rroxscaffold_3G00270740
rosa_rugosa	Rorug06G0453300
rosa_samantha	Rh7AG056300 Rh7BG055600 Rh7DG055800
rosa_wichuraiana	Rw7G004590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	624
AciI	CCGC	1 cut(s)	567
AclWI	GGATC	1 cut(s)	590
AcuI	CTGAAG	3 cut(s)	131, 363, 540
AfaI	GTAC	3 cut(s)	102, 603, 661
AhlI	ACTAGT	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	403
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
AluBI	AGCT	4 cut(s)	30, 365, 557, 654
AluI	AGCT	4 cut(s)	30, 365, 557, 654
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	590
AoxI	GGCC	1 cut(s)	401
ApeKI	GCWGC	1 cut(s)	554
BanI	GGYRCC	1 cut(s)	624
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	566
BccI	CCATC	2 cut(s)	306, 393
BceAI	ACGGC	2 cut(s)	262, 624
BciT130I	CCWGG	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	172
BcuI	ACTAGT	1 cut(s)	97
BfaI	CTAG	3 cut(s)	12, 98, 558
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
BmcAI	AGTACT	2 cut(s)	102, 661
Bme1390I	CCNGG	1 cut(s)	405
BmiI	GGNNCC	3 cut(s)	179, 281, 626
BmrFI	CCNGG	1 cut(s)	405
BpmI	CTGGAG	3 cut(s)	164, 426, 506
BpuEI	CTTGAG	1 cut(s)	640
BsaI	GGTCTC	1 cut(s)	172
BsaWI	WCCGGW	1 cut(s)	598
BseBI	CCWGG	1 cut(s)	405
BseGI	GGATG	2 cut(s)	48, 317
BseMII	CTCAG	4 cut(s)	45, 164, 226, 302
BseXI	GCAGC	1 cut(s)	566
BsgI	GTGCAG	1 cut(s)	555
BshFI	GGCC	1 cut(s)	403
BshNI	GGYRCC	1 cut(s)	624
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	400, 599
BsmAI	GTCTC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	403
Bso31I	GGTCTC	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	595
BspACI	CCGC	1 cut(s)	567
BspANI	GGCC	1 cut(s)	403
BspCNI	CTCAG	4 cut(s)	44, 165, 225, 301
BspLI	GGNNCC	3 cut(s)	179, 281, 626
BspPI	GGATC	1 cut(s)	590
BspT107I	GGYRCC	1 cut(s)	624
BspTNI	GGTCTC	1 cut(s)	172
BssMI	GATC	1 cut(s)	595
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	494, 635
Bst6I	CTCTTC	1 cut(s)	201
BstDEI	CTNAG	5 cut(s)	31, 77, 173, 212, 288
BstF5I	GGATG	2 cut(s)	48, 317
BstKTI	GATC	1 cut(s)	598
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	595
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 554
BstNI	CCWGG	1 cut(s)	405
BstSCI	CCNGG	1 cut(s)	403
BstV1I	GCAGC	1 cut(s)	566
BstX2I	RGATCY	1 cut(s)	595
BstXI	CCANNNNNNTGG	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	595
BsuRI	GGCC	1 cut(s)	403
BtsCI	GGATG	2 cut(s)	48, 317
BtsIMutI	CAGTG	1 cut(s)	640
Csp6I	GTAC	3 cut(s)	101, 602, 660
CviAII	CATG	4 cut(s)	87, 122, 162, 578
CviQI	GTAC	3 cut(s)	101, 602, 660
DdeI	CTNAG	5 cut(s)	31, 77, 173, 212, 288
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Ecl136II	GAGCTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	172
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	3 cut(s)	131, 363, 540
EcoICRI	GAGCTC	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	4 cut(s)	90, 125, 165, 581
FatI	CATG	4 cut(s)	86, 121, 161, 577
FauNDI	CATATG	1 cut(s)	458
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	2 cut(s)	35, 324
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	555
FspBI	CTAG	3 cut(s)	12, 98, 558
GluI	GCNGC	1 cut(s)	555
GsuI	CTGGAG	3 cut(s)	164, 426, 506
HaeIII	GGCC	1 cut(s)	403
HapII	CCGG	2 cut(s)	400, 599
Hin1II	CATG	4 cut(s)	90, 125, 165, 581
HinfI	GANTC	1 cut(s)	267
HpaII	CCGG	2 cut(s)	400, 599
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	4 cut(s)	34, 111, 174, 291
Hpy8I	GTNNAC	1 cut(s)	218
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	9, 294
HpyCH4III	ACNGT	2 cut(s)	494, 635
HpyCH4V	TGCA	3 cut(s)	296, 536, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 554
HpyF3I	CTNAG	5 cut(s)	31, 77, 173, 212, 288
Hsp92II	CATG	4 cut(s)	90, 125, 165, 581
Kzo9I	GATC	1 cut(s)	595
LmnI	GCTCC	3 cut(s)	183, 362, 464
Lsp1109I	GCAGC	1 cut(s)	566
MaeI	CTAG	3 cut(s)	12, 98, 558
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	1 cut(s)	597
MboI	GATC	1 cut(s)	595
MboII	GAAGA	3 cut(s)	124, 139, 188
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	1 cut(s)	528
MnlI	CCTC	5 cut(s)	168, 202, 300, 401, 535
MseI	TTAA	4 cut(s)	65, 413, 669, 687
MspI	CCGG	2 cut(s)	400, 599
MspR9I	CCNGG	1 cut(s)	405
MunI	CAATTG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	2 cut(s)	136, 554
NdeI	CATATG	1 cut(s)	458
NdeII	GATC	1 cut(s)	595
NlaIII	CATG	4 cut(s)	90, 125, 165, 581
NlaIV	GGNNCC	3 cut(s)	179, 281, 626
NmuCI	GTSAC	1 cut(s)	523
PfeI	GAWTC	1 cut(s)	267
PflFI	GACNNNGTC	1 cut(s)	635
PkrI	GCNGC	1 cut(s)	556
Psp124BI	GAGCTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	3 cut(s)	179, 281, 626
PsuI	RGATCY	1 cut(s)	595
PsyI	GACNNNGTC	1 cut(s)	635
RsaI	GTAC	3 cut(s)	102, 603, 661
RsaNI	GTAC	3 cut(s)	101, 602, 660
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	4 cut(s)	65, 413, 669, 687
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	1 cut(s)	595
ScaI	AGTACT	2 cut(s)	102, 661
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	9 cut(s)	32, 367, 412, 479, 501, 514, 546, 559, 656
SmlI	CTYRAG	1 cut(s)	655
SmoI	CTYRAG	1 cut(s)	655
SpeI	ACTAGT	1 cut(s)	97
Sse9I	AATT	1 cut(s)	528
SsiI	CCGC	1 cut(s)	567
SspMI	CTAG	3 cut(s)	12, 98, 558
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	403
TaaI	ACNGT	2 cut(s)	494, 635
TaqI	TCGA	2 cut(s)	321, 562
TasI	AATT	1 cut(s)	528
TatI	WGTACW	2 cut(s)	100, 659
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	4 cut(s)	65, 413, 669, 687
Tru9I	TTAA	4 cut(s)	65, 413, 669, 687
TscAI	CASTG	1 cut(s)	640
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	1 cut(s)	554
Tsp45I	GTSAC	1 cut(s)	523
TspDTI	ATGAA	3 cut(s)	75, 188, 459
TspGWI	ACGGA	1 cut(s)	619
TspRI	CASTG	1 cut(s)	640
Tth111I	GACNNNGTC	1 cut(s)	635
XspI	CTAG	3 cut(s)	12, 98, 558
ZrmI	AGTACT	2 cut(s)	102, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.