Rh7DG055800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011346
Physical Location & Seq
Forward (+)
4316311 .. 4317111
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG055800.1

Sequence Viewer

Length: 717 bp
ATGGCAAACCCCAGAAGGAACAGCCAGAGCTTAGAGAACCCATTTCATGGTCAAAGCCAAAGCCAAAGCCAAAGCCGAAGCCTAAGCCTAAACCAAAGCGTTTCATGGTCATCACTTGTACACTTTCTGAAGAAGCCCCATGCCTTGCCTTTTCTGCTCTCAATCTTCCTTCTGCTTACATGGGTCTCTCTCAGGCTCCAGCACTCCTCGTCCTCTCCTCATTCTCATAATATCAATACACCATTACAGAAGAGCATCAAGGACGACAGCAAGGCCAATCTCGTTAGGTTCGGTTCTGGGTTCCCCTCTCGGATTGCAAAAGATAAGCGGGGATGGTTGCTCGACCCCATTTCCCTTGCCCAACAATCTGGCATTTTGGGTGGAGCTGTGATTTGTGCTTCAATCCATCTTGGAGAAATCCGGCCTGGTGCTTTAAGGGGAAACCACAGACACCATTCTTGTAATGAAACGTTTGTCATATGGGGAGCAGAAACAAGGTTTAGGCTGGAGAATGATGAGGTAGATGATAAGGGTTACGCTGAAGTCACCATTGCTGCAGATGAGGTTGCTGTTGCAGCTAGTCGAAGCGGAACTGCCCACGCTTTAATAAACATAGATCCGGTTCGGACCACGTACTTCATAGGGTGCCAGGACAGTGTCATAGATTATAACAGCTCAAGTACTGATTTTAATGTCTGGGAAAGTCTTAAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

26.32

Weight (kDa)

8.49

Isoelectric Point (pI)

58.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polysacc_synt_C PF14667 136 - 207 7.9e-06 Polysaccharide biosynthesis C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56820 AT3G56820 AT3G56820
fragaria_vesca FvH4_1g29600 FvH4_1g29600 FvH4_1g29600 FvH4_1g29600
malus_domestica MD12G1111100.v1.1
prunus_persica Prupe.7G023500_v2.0.a1 Prupe.7G023500_v2.0.a1
pyrus_communis pycom12g09330
rosa_chinensis RchiOBHm_Chr7g0183121
rosa_laevigata RLG00000005077
rosa_multiflora Rmu_ssc0000111.1_g000009
rosa_roxburghii Rroxscaffold_3G00270740
rosa_rugosa Rorug06G0453300
rosa_samantha Rh7AG056300 Rh7BG055600 Rh7DG055800
rosa_wichuraiana Rw7G004590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
AccB1I GGYRCC 1 cut(s) 645
AccB7I CCANNNNNTGG 1 cut(s) 47
AciI CCGC 2 cut(s) 328, 588
AclI AACGTT 1 cut(s) 470
AclWI GGATC 1 cut(s) 611
AcuI CTGAAG 2 cut(s) 149, 561
AfaI GTAC 3 cut(s) 120, 635, 682
AfiI CCNNNNNNNGG 1 cut(s) 47
AflII CTTAAG 1 cut(s) 707
AgsI TTSAA 1 cut(s) 402
AjnI CCWGG 2 cut(s) 424, 648
AluBI AGCT 4 cut(s) 30, 386, 578, 675
AluI AGCT 4 cut(s) 30, 386, 578, 675
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 1 cut(s) 611
AoxI GGCC 2 cut(s) 273, 422
ApeKI GCWGC 2 cut(s) 554, 575
AspS9I GGNCC 1 cut(s) 627
AsuHPI GGTGA 1 cut(s) 538
AvaII GGWCC 1 cut(s) 627
BanI GGYRCC 1 cut(s) 645
BbvI GCAGC 2 cut(s) 541, 587
BccI CCATC 2 cut(s) 327, 414
BciT130I CCWGG 2 cut(s) 426, 650
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 1 cut(s) 579
BfmI CTRYAG 1 cut(s) 555
BfrI CTTAAG 1 cut(s) 707
BisI GCNGC 2 cut(s) 555, 576
BlsI GCNGC 2 cut(s) 556, 577
BmcAI AGTACT 1 cut(s) 682
Bme1390I CCNGG 2 cut(s) 426, 650
Bme18I GGWCC 1 cut(s) 627
BmgT120I GGNCC 1 cut(s) 627
BmiI GGNNCC 3 cut(s) 197, 302, 647
BmrFI CCNGG 2 cut(s) 426, 650
BmsI GCATC 1 cut(s) 264
BpmI CTGGAG 2 cut(s) 182, 527
Bpu10I CCTNAGC 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 661
BsaAI YACGTR 1 cut(s) 633
BsaI GGTCTC 1 cut(s) 190
BsaWI WCCGGW 1 cut(s) 619
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 549
BseBI CCWGG 2 cut(s) 426, 650
BseGI GGATG 1 cut(s) 338
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 1 cut(s) 205
BseRI GAGGAG 2 cut(s) 196, 207
BseXI GCAGC 2 cut(s) 541, 587
BshFI GGCC 2 cut(s) 275, 424
BshNI GGYRCC 1 cut(s) 645
BsiSI CCGG 2 cut(s) 421, 620
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 190
BsnI GGCC 2 cut(s) 275, 424
Bso31I GGTCTC 1 cut(s) 190
Bsp1407I TGTACA 1 cut(s) 118
Bsp143I GATC 1 cut(s) 616
BspACI CCGC 2 cut(s) 328, 588
BspANI GGCC 2 cut(s) 275, 424
BspCNI CTCAG 1 cut(s) 204
BspLI GGNNCC 3 cut(s) 197, 302, 647
BspMAI CTGCAG 1 cut(s) 559
BspPI GGATC 1 cut(s) 611
BspQI GCTCTTC 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 645
BspTI CTTAAG 1 cut(s) 707
BspTNI GGTCTC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 549
BsrGI TGTACA 1 cut(s) 118
BssMI GATC 1 cut(s) 616
Bst2UI CCWGG 2 cut(s) 426, 650
Bst4CI ACNGT 1 cut(s) 656
Bst6I CTCTTC 1 cut(s) 245
BstAFI CTTAAG 1 cut(s) 707
BstAUI TGTACA 1 cut(s) 118
BstBAI YACGTR 1 cut(s) 633
BstDEI CTNAG 3 cut(s) 31, 83, 191
BstF5I GGATG 1 cut(s) 338
BstKTI GATC 1 cut(s) 619
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 1 cut(s) 616
BstMWI GCNNNNNNNGC 2 cut(s) 154, 575
BstNI CCWGG 2 cut(s) 426, 650
BstSCI CCNGG 2 cut(s) 424, 648
BstSFI CTRYAG 1 cut(s) 555
BstV1I GCAGC 2 cut(s) 541, 587
BstX2I RGATCY 1 cut(s) 616
BstXI CCANNNNNNTGG 1 cut(s) 368
BstYI RGATCY 1 cut(s) 616
BsuRI GGCC 2 cut(s) 275, 424
BtsCI GGATG 1 cut(s) 338
BtsIMutI CAGTG 1 cut(s) 661
Cfr13I GGNCC 1 cut(s) 627
Csp6I GTAC 3 cut(s) 119, 634, 681
CviAII CATG 4 cut(s) 47, 105, 140, 180
CviQI GTAC 3 cut(s) 119, 634, 681
DdeI CTNAG 3 cut(s) 31, 83, 191
DpnI GATC 1 cut(s) 618
DpnII GATC 1 cut(s) 616
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco31I GGTCTC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 627
Eco57I CTGAAG 2 cut(s) 149, 561
EcoRII CCWGG 2 cut(s) 424, 648
FaeI CATG 4 cut(s) 50, 108, 143, 183
FatI CATG 4 cut(s) 46, 104, 139, 179
FauI CCCGC 1 cut(s) 321
FauNDI CATATG 1 cut(s) 479
Fnu4HI GCNGC 2 cut(s) 555, 576
FokI GGATG 1 cut(s) 345
Fsp4HI GCNGC 2 cut(s) 555, 576
FspBI CTAG 1 cut(s) 579
GluI GCNGC 2 cut(s) 555, 576
GsuI CTGGAG 2 cut(s) 182, 527
HaeIII GGCC 2 cut(s) 275, 424
HapII CCGG 2 cut(s) 421, 620
Hin1II CATG 4 cut(s) 50, 108, 143, 183
HpaII CCGG 2 cut(s) 421, 620
HphI GGTGA 1 cut(s) 538
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 3 cut(s) 129, 312, 627
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 2 cut(s) 9, 179
HpyCH4III ACNGT 1 cut(s) 656
HpyCH4IV ACGT 2 cut(s) 470, 632
HpyCH4V TGCA 3 cut(s) 317, 557, 575
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 575
HpyF3I CTNAG 3 cut(s) 31, 83, 191
HpySE526I ACGT 2 cut(s) 470, 632
Hsp92II CATG 4 cut(s) 50, 108, 143, 183
Kzo9I GATC 1 cut(s) 616
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 3 cut(s) 201, 383, 485
Lsp1109I GCAGC 2 cut(s) 541, 587
LweI GCATC 1 cut(s) 264
MaeI CTAG 1 cut(s) 579
MaeII ACGT 2 cut(s) 470, 632
MaeIII GTNAC 2 cut(s) 533, 544
MalI GATC 1 cut(s) 618
MboI GATC 1 cut(s) 616
MboII GAAGA 3 cut(s) 142, 157, 262
MflI RGATCY 1 cut(s) 616
MnlI CCTC 6 cut(s) 217, 223, 228, 316, 511, 556
MseI TTAA 4 cut(s) 434, 605, 690, 708
MspCI CTTAAG 1 cut(s) 707
MspI CCGG 2 cut(s) 421, 620
MspR9I CCNGG 2 cut(s) 426, 650
MvaI CCWGG 2 cut(s) 426, 650
MwoI GCNNNNNNNGC 2 cut(s) 154, 575
NdeI CATATG 1 cut(s) 479
NdeII GATC 1 cut(s) 616
NlaIII CATG 4 cut(s) 50, 108, 143, 183
NlaIV GGNNCC 3 cut(s) 197, 302, 647
NmuCI GTSAC 1 cut(s) 544
PciSI GCTCTTC 1 cut(s) 245
PflFI GACNNNGTC 1 cut(s) 656
PflMI CCANNNNNTGG 1 cut(s) 47
PkrI GCNGC 2 cut(s) 556, 577
Ppu21I YACGTR 1 cut(s) 633
PsiI TTATAA 1 cut(s) 669
Psp1406I AACGTT 1 cut(s) 470
Psp6I CCWGG 2 cut(s) 424, 648
PspGI CCWGG 2 cut(s) 424, 648
PspN4I GGNNCC 3 cut(s) 197, 302, 647
PspPI GGNCC 1 cut(s) 627
PstI CTGCAG 1 cut(s) 559
PsuI RGATCY 1 cut(s) 616
PsyI GACNNNGTC 1 cut(s) 656
RsaI GTAC 3 cut(s) 120, 635, 682
RsaNI GTAC 3 cut(s) 119, 634, 681
SapI GCTCTTC 1 cut(s) 245
SaqAI TTAA 4 cut(s) 434, 605, 690, 708
SatI GCNGC 2 cut(s) 555, 576
Sau3AI GATC 1 cut(s) 616
Sau96I GGNCC 1 cut(s) 627
ScaI AGTACT 1 cut(s) 682
ScrFI CCNGG 2 cut(s) 426, 650
SfaNI GCATC 1 cut(s) 264
SfcI CTRYAG 1 cut(s) 555
SinI GGWCC 1 cut(s) 627
SmlI CTYRAG 2 cut(s) 676, 707
SmoI CTYRAG 2 cut(s) 676, 707
SsiI CCGC 2 cut(s) 328, 588
SspMI CTAG 1 cut(s) 579
StyD4I CCNGG 2 cut(s) 424, 648
TaaI ACNGT 1 cut(s) 656
TaiI ACGT 2 cut(s) 473, 635
TaqI TCGA 2 cut(s) 342, 583
TatI WGTACW 2 cut(s) 118, 680
Tru1I TTAA 4 cut(s) 434, 605, 690, 708
Tru9I TTAA 4 cut(s) 434, 605, 690, 708
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 1 cut(s) 544
TseI GCWGC 2 cut(s) 554, 575
Tsp45I GTSAC 1 cut(s) 544
TspDTI ATGAA 4 cut(s) 35, 93, 480, 628
TspRI CASTG 1 cut(s) 661
Tth111I GACNNNGTC 1 cut(s) 656
Van91I CCANNNNNTGG 1 cut(s) 47
Vha464I CTTAAG 1 cut(s) 707
VpaK11BI GGWCC 1 cut(s) 627
XspI CTAG 1 cut(s) 579
ZrmI AGTACT 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.