Prupe.7G023500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011346
Physical Location & Seq
Forward (+)
3722651 .. 3726011
3361 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G023500.1

Sequence Viewer

Length: 696 bp
ATGGCAAACCCTCGAAGGAACAGCCAGAGCTCAGAGAACCAATTCCATAGCCAAAGCATCCAATTCTCCTCATCACTTGTCCACTTTCTGAAGAAGCCGCATGCCTTCCCTTTTCTGCTCTCCATCCTCCTTTTGCTCACATGGGTCTCTCTCAGACTTCAACACTCCTCCTACCTCTCCTCTGCTCCTTCCCATATTTCTAAAGACAAAGACAAGCCCCTCACCCATAAAAAATGGAGCCAATTGAGTGATTCCAGCGCCAATGTCATTAGGTTCAGCTCTGGGTTTCCTTCTCGGATTGCAAAAGACAAGAGGGGATGGCTGCTCGACCCCATCTCCCTTGCCCTTGATTCTGGCATTTCAGGTGGAGCTGTGGGCTGTGTTTCAATTCATCTTGGAGAAATCCAACCTGGTGGTTTGAGGGGAAATCACAGGCACCATACTTGTAATGAAACATTTGTCATATGGGGTGCTGAAACCAAGTTTAGGCTGGAGAACCACCAGGTGGATGGTAAAGGCTATGCTGAAGTGACCATTGGTGCAGATGAGGTTGCTGTTGCAGGTAGCCCAAGCGGAACTGCCCATGCTTTAATAAATATAGATCCAGTACGGAGTTCATACTTCATAGGATGTCAAGACAGCATCATAAATTATAACAGCTCAAGTACAGATTTTAATGTCTGGAAAAATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.38

Weight (kDa)

9.01

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56820 AT3G56820 AT3G56820
fragaria_vesca FvH4_1g29600 FvH4_1g29600 FvH4_1g29600 FvH4_1g29600
malus_domestica MD12G1111100.v1.1
prunus_persica Prupe.7G023500_v2.0.a1 Prupe.7G023500_v2.0.a1
pyrus_communis pycom12g09330
rosa_chinensis RchiOBHm_Chr7g0183121
rosa_laevigata RLG00000005077
rosa_multiflora Rmu_ssc0000111.1_g000009
rosa_roxburghii Rroxscaffold_3G00270740
rosa_rugosa Rorug06G0453300
rosa_samantha Rh7AG056300 Rh7BG055600 Rh7DG055800
rosa_wichuraiana Rw7G004590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 654
Acc36I ACCTGC 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 435
AccB7I CCANNNNNTGG 1 cut(s) 505
AciI CCGC 2 cut(s) 98, 573
AclWI GGATC 1 cut(s) 596
AcuI CTGAAG 2 cut(s) 110, 546
AdeI CACNNNGTG 1 cut(s) 505
AfaI GTAC 2 cut(s) 609, 667
AfiI CCNNNNNNNGG 2 cut(s) 486, 505
AgsI TTSAA 2 cut(s) 161, 387
AjnI CCWGG 2 cut(s) 409, 501
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
AluBI AGCT 4 cut(s) 30, 279, 371, 660
AluI AGCT 4 cut(s) 30, 279, 371, 660
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 1 cut(s) 596
ApeKI GCWGC 1 cut(s) 322
Asp700I GAANNNNTTC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 214
BanI GGYRCC 1 cut(s) 435
BanII GRGCYC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 309
BccI CCATC 4 cut(s) 131, 312, 341, 503
BciT130I CCWGG 2 cut(s) 411, 503
BcoDI GTCTC 1 cut(s) 151
BfoI RGCGCY 1 cut(s) 261
BfuAI ACCTGC 1 cut(s) 551
BisI GCNGC 2 cut(s) 98, 323
BlsI GCNGC 2 cut(s) 99, 324
Bme1390I CCNGG 2 cut(s) 411, 503
BmiI GGNNCC 2 cut(s) 239, 437
BmrFI CCNGG 2 cut(s) 411, 503
BmsI GCATC 2 cut(s) 66, 651
BpmI CTGGAG 1 cut(s) 512
BpuEI CTTGAG 1 cut(s) 646
BsaI GGTCTC 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 2 cut(s) 486, 505
Bse1I ACTGG 1 cut(s) 605
BseBI CCWGG 2 cut(s) 411, 503
BseGI GGATG 5 cut(s) 57, 123, 323, 514, 635
BseLI CCNNNNNNNGG 2 cut(s) 486, 505
BseMII CTCAG 2 cut(s) 45, 166
BseNI ACTGG 1 cut(s) 605
BseRI GAGGAG 3 cut(s) 58, 157, 169
BseXI GCAGC 1 cut(s) 309
BsgI GTGCAG 1 cut(s) 561
BshNI GGYRCC 1 cut(s) 435
BsiHKAI GWGCWC 1 cut(s) 32
BslI CCNNNNNNNGG 2 cut(s) 486, 505
BsmAI GTCTC 1 cut(s) 151
Bso31I GGTCTC 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 601
BspACI CCGC 2 cut(s) 98, 573
BspCNI CTCAG 2 cut(s) 44, 165
BspLI GGNNCC 2 cut(s) 239, 437
BspMI ACCTGC 1 cut(s) 551
BspPI GGATC 1 cut(s) 596
BspT107I GGYRCC 1 cut(s) 435
BspTNI GGTCTC 1 cut(s) 151
BsrI ACTGG 1 cut(s) 605
BssMI GATC 1 cut(s) 601
Bst2UI CCWGG 2 cut(s) 411, 503
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 31, 152
BstF5I GGATG 5 cut(s) 57, 123, 323, 514, 635
BstH2I RGCGCY 1 cut(s) 261
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 1 cut(s) 604
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 1 cut(s) 601
BstNI CCWGG 2 cut(s) 411, 503
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 2 cut(s) 409, 501
BstV1I GCAGC 1 cut(s) 309
BstX2I RGATCY 1 cut(s) 601
BstXI CCANNNNNNTGG 2 cut(s) 413, 509
BstYI RGATCY 1 cut(s) 601
BtsCI GGATG 5 cut(s) 57, 123, 323, 514, 635
BveI ACCTGC 1 cut(s) 551
Cac8I GCNNGC 1 cut(s) 102
CfoI GCGC 1 cut(s) 260
CsiI ACCWGGT 2 cut(s) 409, 501
Csp6I GTAC 2 cut(s) 608, 666
CviAII CATG 3 cut(s) 101, 141, 584
CviQI GTAC 2 cut(s) 608, 666
DdeI CTNAG 2 cut(s) 31, 152
DpnI GATC 1 cut(s) 603
DpnII GATC 1 cut(s) 601
DraIII CACNNNGTG 1 cut(s) 505
Ecl136II GAGCTC 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 110, 546
EcoICRI GAGCTC 1 cut(s) 30
EcoRII CCWGG 2 cut(s) 409, 501
EcoT38I GRGCYC 1 cut(s) 32
FaeI CATG 3 cut(s) 104, 144, 587
FatI CATG 3 cut(s) 100, 140, 583
FauNDI CATATG 1 cut(s) 464
Fnu4HI GCNGC 2 cut(s) 98, 323
FokI GGATG 5 cut(s) 44, 110, 330, 521, 642
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 2 cut(s) 98, 323
GlaI GCGC 1 cut(s) 259
GluI GCNGC 2 cut(s) 98, 323
GsuI CTGGAG 1 cut(s) 512
HaeII RGCGCY 1 cut(s) 261
HhaI GCGC 1 cut(s) 260
Hin1II CATG 3 cut(s) 104, 144, 587
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HinfI GANTC 2 cut(s) 251, 350
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 4 cut(s) 34, 90, 155, 297
Hpy188III TCNNGA 2 cut(s) 635, 682
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 4 cut(s) 9, 115, 198, 300
HpyCH4V TGCA 3 cut(s) 302, 542, 560
HpyF3I CTNAG 2 cut(s) 31, 152
Hsp92II CATG 3 cut(s) 104, 144, 587
HspAI GCGC 1 cut(s) 258
Kzo9I GATC 1 cut(s) 601
LmnI GCTCC 3 cut(s) 190, 237, 368
Lsp1109I GCAGC 1 cut(s) 309
LweI GCATC 2 cut(s) 66, 651
MabI ACCWGGT 2 cut(s) 409, 501
MaeIII GTNAC 1 cut(s) 529
MalI GATC 1 cut(s) 603
MboI GATC 1 cut(s) 601
MboII GAAGA 1 cut(s) 103
MfeI CAATTG 1 cut(s) 242
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 5 cut(s) 41, 62, 242, 387, 649
MmeI TCCRAC 1 cut(s) 430
MroXI GAANNNNTTC 1 cut(s) 41
MseI TTAA 3 cut(s) 590, 675, 694
MspR9I CCNGG 2 cut(s) 411, 503
MunI CAATTG 1 cut(s) 242
MvaI CCWGG 2 cut(s) 411, 503
NdeI CATATG 1 cut(s) 464
NdeII GATC 1 cut(s) 601
NlaIII CATG 3 cut(s) 104, 144, 587
NlaIV GGNNCC 2 cut(s) 239, 437
NmuCI GTSAC 1 cut(s) 529
NspI RCATGY 1 cut(s) 104
PaeI GCATGC 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 2 cut(s) 251, 350
PflMI CCANNNNNTGG 1 cut(s) 505
PkrI GCNGC 2 cut(s) 99, 324
PsiI TTATAA 1 cut(s) 654
Psp124BI GAGCTC 1 cut(s) 32
Psp6I CCWGG 2 cut(s) 409, 501
PspGI CCWGG 2 cut(s) 409, 501
PspN4I GGNNCC 2 cut(s) 239, 437
PsuI RGATCY 1 cut(s) 601
RsaI GTAC 2 cut(s) 609, 667
RsaNI GTAC 2 cut(s) 608, 666
SacI GAGCTC 1 cut(s) 32
SaqAI TTAA 3 cut(s) 590, 675, 694
SatI GCNGC 2 cut(s) 98, 323
Sau3AI GATC 1 cut(s) 601
ScrFI CCNGG 2 cut(s) 411, 503
SduI GDGCHC 1 cut(s) 32
SexAI ACCWGGT 2 cut(s) 409, 501
SfaNI GCATC 2 cut(s) 66, 651
SmlI CTYRAG 1 cut(s) 661
SmoI CTYRAG 1 cut(s) 661
SphI GCATGC 1 cut(s) 104
Sse9I AATT 5 cut(s) 41, 62, 242, 387, 649
SsiI CCGC 2 cut(s) 98, 573
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 2 cut(s) 409, 501
TaqI TCGA 2 cut(s) 13, 327
TasI AATT 5 cut(s) 41, 62, 242, 387, 649
TatI WGTACW 1 cut(s) 665
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 2 cut(s) 251, 350
Tru1I TTAA 3 cut(s) 590, 675, 694
Tru9I TTAA 3 cut(s) 590, 675, 694
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 529
TspDTI ATGAA 4 cut(s) 380, 465, 606, 613
TspGWI ACGGA 1 cut(s) 625
Van91I CCANNNNNTGG 1 cut(s) 505
XceI RCATGY 1 cut(s) 104
XcmI CCANNNNNNNNNTGG 2 cut(s) 487, 506
XmnI GAANNNNTTC 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.