Rh7AG056300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011346
Physical Location & Seq
Forward (+)
3884229 .. 3886797
2569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG056300.1

Sequence Viewer

Length: 795 bp
ATGACCATATCCTATGTGCAATGTCAAAGGAGTATTGAGAAGCGAATTCGACAAGACACAGCGGAGGAAGTGATGGCAAACCCCAGAAGGAACAGCCAGAGCTTAGAGAACCCATTTCATGGTCAAAGCCAAAGCCAAAGCCAAAGCCAAAGCCGAAGCCTAAGCCTAAACCAAAGCGTTTCATGGTCATCACTTGTACACTTTCTGAAGAAGCCCCATGCCTTGCCTTTTCTGCTCTCAATCTTCCTTCTGCTTACATGGGTCTCTCTCAGGCTCCAGCACTCCTCGTCCTCTCCTCATTCTCATAATATCAATACACCATTACAGAAGAACATCAAGGACGACAGCAAGGCCAATCTCGTTAGGTTCGGTTCTGGGTTCCCCTCTCGGATTGCAAAAGATAAGCGGGGATGGTTGCTCGACCCCATTTCCCTTGCCCAACAATCTGGCATTTTGGGTGGAGCTGTGATTTGTGCTTCAATCCATCTTGGAGAAATCCGGCCTGGTGCTTTAAGGGGAAACCACAGACACCATTCTTGTAATGAAACGTTTGTCATATGGGGAGCAGAAACAAGGTTTAGGCTGGAGAATGATGAGGTAGATGATAAAGGTTACGCTGAAGTCACCATTGCTGCAGATGAGGTTGCTGTTGCAGCTAGTCGAAGCGGAACTGCCCACGCTTTAATAAACATAGATCCGGTTCGGACCACATACTTCATAGGGTGCCAGGACAGTGTCATAGATTATAACAGCTCAAGTACTGATTTTAATGTCTGGGAAAGTCTTAAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

29.43

Weight (kDa)

8.37

Isoelectric Point (pI)

63.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polysacc_synt_C PF14667 162 - 233 9.9e-06 Polysaccharide biosynthesis C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56820 AT3G56820 AT3G56820
fragaria_vesca FvH4_1g29600 FvH4_1g29600 FvH4_1g29600 FvH4_1g29600
malus_domestica MD12G1111100.v1.1
prunus_persica Prupe.7G023500_v2.0.a1 Prupe.7G023500_v2.0.a1
pyrus_communis pycom12g09330
rosa_chinensis RchiOBHm_Chr7g0183121
rosa_laevigata RLG00000005077
rosa_multiflora Rmu_ssc0000111.1_g000009
rosa_roxburghii Rroxscaffold_3G00270740
rosa_rugosa Rorug06G0453300
rosa_samantha Rh7AG056300 Rh7BG055600 Rh7DG055800
rosa_wichuraiana Rw7G004590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 747
AccB1I GGYRCC 1 cut(s) 723
AccB7I CCANNNNNTGG 1 cut(s) 119
AciI CCGC 3 cut(s) 62, 406, 666
AclI AACGTT 1 cut(s) 548
AclWI GGATC 1 cut(s) 689
AcsI RAATTY 1 cut(s) 45
AcuI CTGAAG 2 cut(s) 227, 639
AfaI GTAC 2 cut(s) 198, 760
AfiI CCNNNNNNNGG 1 cut(s) 119
AflII CTTAAG 1 cut(s) 785
AgsI TTSAA 1 cut(s) 480
AjnI CCWGG 2 cut(s) 502, 726
AluBI AGCT 4 cut(s) 102, 464, 656, 753
AluI AGCT 4 cut(s) 102, 464, 656, 753
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 1 cut(s) 689
AoxI GGCC 2 cut(s) 351, 500
ApeKI GCWGC 2 cut(s) 632, 653
ApoI RAATTY 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 705
AsuHPI GGTGA 1 cut(s) 616
AvaII GGWCC 1 cut(s) 705
BanI GGYRCC 1 cut(s) 723
BbvI GCAGC 2 cut(s) 619, 665
BccI CCATC 3 cut(s) 67, 405, 492
BciT130I CCWGG 2 cut(s) 504, 728
BcoDI GTCTC 1 cut(s) 268
BfaI CTAG 1 cut(s) 657
BfmI CTRYAG 1 cut(s) 633
BfrI CTTAAG 1 cut(s) 785
BisI GCNGC 2 cut(s) 633, 654
BlsI GCNGC 2 cut(s) 634, 655
BmcAI AGTACT 1 cut(s) 760
Bme1390I CCNGG 2 cut(s) 504, 728
Bme18I GGWCC 1 cut(s) 705
BmgT120I GGNCC 1 cut(s) 705
BmiI GGNNCC 3 cut(s) 275, 380, 725
BmrFI CCNGG 2 cut(s) 504, 728
BpmI CTGGAG 2 cut(s) 260, 605
Bpu10I CCTNAGC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 739
BsaI GGTCTC 1 cut(s) 268
BsaWI WCCGGW 1 cut(s) 697
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse3DI GCAATG 2 cut(s) 26, 627
BseBI CCWGG 2 cut(s) 504, 728
BseGI GGATG 1 cut(s) 416
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 2 cut(s) 26, 627
BseMII CTCAG 1 cut(s) 283
BseRI GAGGAG 2 cut(s) 274, 285
BseXI GCAGC 2 cut(s) 619, 665
BshFI GGCC 2 cut(s) 353, 502
BshNI GGYRCC 1 cut(s) 723
BsiSI CCGG 2 cut(s) 499, 698
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 268
BsnI GGCC 2 cut(s) 353, 502
Bso31I GGTCTC 1 cut(s) 268
Bsp1407I TGTACA 1 cut(s) 196
Bsp143I GATC 1 cut(s) 694
BspACI CCGC 3 cut(s) 62, 406, 666
BspANI GGCC 2 cut(s) 353, 502
BspCNI CTCAG 1 cut(s) 282
BspLI GGNNCC 3 cut(s) 275, 380, 725
BspMAI CTGCAG 1 cut(s) 637
BspPI GGATC 1 cut(s) 689
BspT107I GGYRCC 1 cut(s) 723
BspTI CTTAAG 1 cut(s) 785
BspTNI GGTCTC 1 cut(s) 268
BsrDI GCAATG 2 cut(s) 26, 627
BsrGI TGTACA 1 cut(s) 196
BssMI GATC 1 cut(s) 694
Bst2UI CCWGG 2 cut(s) 504, 728
Bst4CI ACNGT 1 cut(s) 734
BstAFI CTTAAG 1 cut(s) 785
BstAUI TGTACA 1 cut(s) 196
BstDEI CTNAG 3 cut(s) 103, 161, 269
BstF5I GGATG 1 cut(s) 416
BstKTI GATC 1 cut(s) 697
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 1 cut(s) 694
BstMWI GCNNNNNNNGC 2 cut(s) 232, 653
BstNI CCWGG 2 cut(s) 504, 728
BstSCI CCNGG 2 cut(s) 502, 726
BstSFI CTRYAG 1 cut(s) 633
BstV1I GCAGC 2 cut(s) 619, 665
BstX2I RGATCY 1 cut(s) 694
BstXI CCANNNNNNTGG 1 cut(s) 446
BstYI RGATCY 1 cut(s) 694
BsuRI GGCC 2 cut(s) 353, 502
BtsCI GGATG 1 cut(s) 416
BtsIMutI CAGTG 1 cut(s) 739
Cfr13I GGNCC 1 cut(s) 705
Csp6I GTAC 2 cut(s) 197, 759
CviAII CATG 4 cut(s) 119, 183, 218, 258
CviQI GTAC 2 cut(s) 197, 759
DdeI CTNAG 3 cut(s) 103, 161, 269
DpnI GATC 1 cut(s) 696
DpnII GATC 1 cut(s) 694
Eco31I GGTCTC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 705
Eco57I CTGAAG 2 cut(s) 227, 639
EcoRI GAATTC 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 502, 726
FaeI CATG 4 cut(s) 122, 186, 221, 261
FatI CATG 4 cut(s) 118, 182, 217, 257
FauI CCCGC 1 cut(s) 399
FauNDI CATATG 1 cut(s) 557
Fnu4HI GCNGC 2 cut(s) 633, 654
FokI GGATG 1 cut(s) 423
Fsp4HI GCNGC 2 cut(s) 633, 654
FspBI CTAG 1 cut(s) 657
GluI GCNGC 2 cut(s) 633, 654
GsuI CTGGAG 2 cut(s) 260, 605
HaeIII GGCC 2 cut(s) 353, 502
HapII CCGG 2 cut(s) 499, 698
Hin1II CATG 4 cut(s) 122, 186, 221, 261
HpaII CCGG 2 cut(s) 499, 698
HphI GGTGA 1 cut(s) 616
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 3 cut(s) 207, 390, 705
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 2 cut(s) 81, 257
HpyCH4III ACNGT 1 cut(s) 734
HpyCH4IV ACGT 1 cut(s) 548
HpyCH4V TGCA 4 cut(s) 19, 395, 635, 653
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 653
HpyF3I CTNAG 3 cut(s) 103, 161, 269
HpySE526I ACGT 1 cut(s) 548
Hsp92II CATG 4 cut(s) 122, 186, 221, 261
Kzo9I GATC 1 cut(s) 694
LmnI GCTCC 3 cut(s) 279, 461, 563
Lsp1109I GCAGC 2 cut(s) 619, 665
MaeI CTAG 1 cut(s) 657
MaeII ACGT 1 cut(s) 548
MaeIII GTNAC 2 cut(s) 611, 622
MalI GATC 1 cut(s) 696
MboI GATC 1 cut(s) 694
MboII GAAGA 3 cut(s) 220, 235, 340
MflI RGATCY 1 cut(s) 694
MluCI AATT 1 cut(s) 45
MnlI CCTC 7 cut(s) 58, 295, 301, 306, 394, 589, 634
MseI TTAA 4 cut(s) 512, 683, 768, 786
MspA1I CMGCKG 1 cut(s) 62
MspCI CTTAAG 1 cut(s) 785
MspI CCGG 2 cut(s) 499, 698
MspR9I CCNGG 2 cut(s) 504, 728
MvaI CCWGG 2 cut(s) 504, 728
MwoI GCNNNNNNNGC 2 cut(s) 232, 653
NdeI CATATG 1 cut(s) 557
NdeII GATC 1 cut(s) 694
NlaIII CATG 4 cut(s) 122, 186, 221, 261
NlaIV GGNNCC 3 cut(s) 275, 380, 725
NmuCI GTSAC 1 cut(s) 622
PflFI GACNNNGTC 1 cut(s) 734
PflMI CCANNNNNTGG 1 cut(s) 119
PkrI GCNGC 2 cut(s) 634, 655
PsiI TTATAA 1 cut(s) 747
Psp1406I AACGTT 1 cut(s) 548
Psp6I CCWGG 2 cut(s) 502, 726
PspGI CCWGG 2 cut(s) 502, 726
PspN4I GGNNCC 3 cut(s) 275, 380, 725
PspPI GGNCC 1 cut(s) 705
PstI CTGCAG 1 cut(s) 637
PsuI RGATCY 1 cut(s) 694
PsyI GACNNNGTC 1 cut(s) 734
RsaI GTAC 2 cut(s) 198, 760
RsaNI GTAC 2 cut(s) 197, 759
SaqAI TTAA 4 cut(s) 512, 683, 768, 786
SatI GCNGC 2 cut(s) 633, 654
Sau3AI GATC 1 cut(s) 694
Sau96I GGNCC 1 cut(s) 705
ScaI AGTACT 1 cut(s) 760
ScrFI CCNGG 2 cut(s) 504, 728
SfcI CTRYAG 1 cut(s) 633
SinI GGWCC 1 cut(s) 705
SmlI CTYRAG 2 cut(s) 754, 785
SmoI CTYRAG 2 cut(s) 754, 785
Sse9I AATT 1 cut(s) 45
SsiI CCGC 3 cut(s) 62, 406, 666
SspMI CTAG 1 cut(s) 657
StyD4I CCNGG 2 cut(s) 502, 726
TaaI ACNGT 1 cut(s) 734
TaiI ACGT 1 cut(s) 551
TaqI TCGA 3 cut(s) 49, 420, 661
TasI AATT 1 cut(s) 45
TatI WGTACW 2 cut(s) 196, 758
Tru1I TTAA 4 cut(s) 512, 683, 768, 786
Tru9I TTAA 4 cut(s) 512, 683, 768, 786
TscAI CASTG 1 cut(s) 739
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 2 cut(s) 632, 653
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 4 cut(s) 107, 171, 558, 706
TspRI CASTG 1 cut(s) 739
Tth111I GACNNNGTC 1 cut(s) 734
Van91I CCANNNNNTGG 1 cut(s) 119
Vha464I CTTAAG 1 cut(s) 785
VpaK11BI GGWCC 1 cut(s) 705
XapI RAATTY 1 cut(s) 45
XspI CTAG 1 cut(s) 657
ZrmI AGTACT 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.