Rroxscaffold_3G00270740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011346
Physical Location & Seq
Reverse (-)
63272493 .. 63273430
938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00270740.1

Sequence Viewer

Length: 711 bp
ATGGCAAACCCCAGAAGGAACAGCCAGAGCTTAGAGAACCCATTTCATGGTCAAAGCCAAAGCCGAAGCCTAAGCCTAAGCCTAAACCAAAGCGTTTCATGGTCATCACTTGTACACTTTCTGAAGAAGCCCCATGCCTTGCCTTTTCTGCTCTCAATCTTCCTTCTGCTTACATGGGTCTCTCTCAGGCTCCAGCACTCCTCGTCCTCTCTTCATTCTCATAATATCAATACACCATTACAGAAGAACGTCAAGGACGACAGCAAGGCCAATCTCGTTAGGTTCGGTTCTGGGTTCCCCTCTCGGATTGCAAAAGATAAGCGGGGATGGTTGCTCGACCCCATTTCCCTTGCCCAACAATCTGGCATTTTGGGTGGAGCTGTGATTTGTGCTTCAATCCATCTTGGAGAAATCCGGCCTGGTGCTTTAAGGGGAAACCACAGACACCATTCTTGTAATGAAACATTTGTGATATGGGGAGCAGAAACAAGGTTCAGGCTGGAGAACGATGAGGTAGATGATAAAGGTTACGCTGAAGTCATCATTGGTGCAGATGAGGTTGCTGTTGCAGCTAGTCGAAGCGGAACTGCTCATGCTTTAATAAACATAGATCCGGTTCGGACCACATACTTCATAGGGTGCCAGGACAGTGTCATAGATTATAACAGCTCAAGTACTGATTTTAATGTCTGGGAAAGTCTTAAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

26.12

Weight (kDa)

8.49

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56820 AT3G56820 AT3G56820
fragaria_vesca FvH4_1g29600 FvH4_1g29600 FvH4_1g29600 FvH4_1g29600
malus_domestica MD12G1111100.v1.1
prunus_persica Prupe.7G023500_v2.0.a1 Prupe.7G023500_v2.0.a1
pyrus_communis pycom12g09330
rosa_chinensis RchiOBHm_Chr7g0183121
rosa_laevigata RLG00000005077
rosa_multiflora Rmu_ssc0000111.1_g000009
rosa_roxburghii Rroxscaffold_3G00270740
rosa_rugosa Rorug06G0453300
rosa_samantha Rh7AG056300 Rh7BG055600 Rh7DG055800
rosa_wichuraiana Rw7G004590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
AccB1I GGYRCC 1 cut(s) 639
AccB7I CCANNNNNTGG 1 cut(s) 47
AciI CCGC 2 cut(s) 322, 582
AclWI GGATC 1 cut(s) 605
AcuI CTGAAG 2 cut(s) 143, 555
AfaI GTAC 2 cut(s) 114, 676
AfiI CCNNNNNNNGG 1 cut(s) 47
AflII CTTAAG 1 cut(s) 701
AgsI TTSAA 1 cut(s) 396
AjnI CCWGG 2 cut(s) 418, 642
AjuI GAANNNNNNNTTGG 2 cut(s) 528, 560
AluBI AGCT 4 cut(s) 30, 380, 572, 669
AluI AGCT 4 cut(s) 30, 380, 572, 669
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 1 cut(s) 605
AoxI GGCC 2 cut(s) 267, 416
ApeKI GCWGC 1 cut(s) 569
AspS9I GGNCC 1 cut(s) 621
AvaII GGWCC 1 cut(s) 621
BanI GGYRCC 1 cut(s) 639
BbvI GCAGC 1 cut(s) 581
BccI CCATC 2 cut(s) 321, 408
BciT130I CCWGG 2 cut(s) 420, 644
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 1 cut(s) 573
BfrI CTTAAG 1 cut(s) 701
BisI GCNGC 1 cut(s) 570
BlsI GCNGC 1 cut(s) 571
BmcAI AGTACT 1 cut(s) 676
Bme1390I CCNGG 2 cut(s) 420, 644
Bme18I GGWCC 1 cut(s) 621
BmgT120I GGNCC 1 cut(s) 621
BmiI GGNNCC 3 cut(s) 191, 296, 641
BmrFI CCNGG 2 cut(s) 420, 644
BpmI CTGGAG 2 cut(s) 176, 521
Bpu10I CCTNAGC 2 cut(s) 71, 77
BpuEI CTTGAG 1 cut(s) 655
BsaI GGTCTC 1 cut(s) 184
BsaWI WCCGGW 1 cut(s) 613
Bsc4I CCNNNNNNNGG 1 cut(s) 47
BseBI CCWGG 2 cut(s) 420, 644
BseGI GGATG 1 cut(s) 332
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 581
BsgI GTGCAG 1 cut(s) 570
BshFI GGCC 2 cut(s) 269, 418
BshNI GGYRCC 1 cut(s) 639
BsiSI CCGG 2 cut(s) 415, 614
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 184
BsnI GGCC 2 cut(s) 269, 418
Bso31I GGTCTC 1 cut(s) 184
Bsp1407I TGTACA 1 cut(s) 112
Bsp143I GATC 1 cut(s) 610
BspACI CCGC 2 cut(s) 322, 582
BspANI GGCC 2 cut(s) 269, 418
BspCNI CTCAG 1 cut(s) 198
BspLI GGNNCC 3 cut(s) 191, 296, 641
BspPI GGATC 1 cut(s) 605
BspT107I GGYRCC 1 cut(s) 639
BspTI CTTAAG 1 cut(s) 701
BspTNI GGTCTC 1 cut(s) 184
BsrGI TGTACA 1 cut(s) 112
BssMI GATC 1 cut(s) 610
Bst2UI CCWGG 2 cut(s) 420, 644
Bst4CI ACNGT 1 cut(s) 650
Bst6I CTCTTC 1 cut(s) 216
BstAFI CTTAAG 1 cut(s) 701
BstAUI TGTACA 1 cut(s) 112
BstDEI CTNAG 4 cut(s) 31, 71, 77, 185
BstF5I GGATG 1 cut(s) 332
BstKTI GATC 1 cut(s) 613
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 1 cut(s) 610
BstMWI GCNNNNNNNGC 2 cut(s) 148, 569
BstNI CCWGG 2 cut(s) 420, 644
BstSCI CCNGG 2 cut(s) 418, 642
BstV1I GCAGC 1 cut(s) 581
BstX2I RGATCY 1 cut(s) 610
BstXI CCANNNNNNTGG 1 cut(s) 362
BstYI RGATCY 1 cut(s) 610
BsuRI GGCC 2 cut(s) 269, 418
BtsCI GGATG 1 cut(s) 332
BtsIMutI CAGTG 1 cut(s) 655
Cfr13I GGNCC 1 cut(s) 621
Csp6I GTAC 2 cut(s) 113, 675
CviAII CATG 5 cut(s) 47, 99, 134, 174, 593
CviQI GTAC 2 cut(s) 113, 675
DdeI CTNAG 4 cut(s) 31, 71, 77, 185
DpnI GATC 1 cut(s) 612
DpnII GATC 1 cut(s) 610
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 621
Eco57I CTGAAG 2 cut(s) 143, 555
EcoRII CCWGG 2 cut(s) 418, 642
FaeI CATG 5 cut(s) 50, 102, 137, 177, 596
FatI CATG 5 cut(s) 46, 98, 133, 173, 592
FauI CCCGC 1 cut(s) 315
Fnu4HI GCNGC 1 cut(s) 570
FokI GGATG 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 570
FspBI CTAG 1 cut(s) 573
GluI GCNGC 1 cut(s) 570
GsuI CTGGAG 2 cut(s) 176, 521
HaeIII GGCC 2 cut(s) 269, 418
HapII CCGG 2 cut(s) 415, 614
Hin1II CATG 5 cut(s) 50, 102, 137, 177, 596
HpaII CCGG 2 cut(s) 415, 614
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 3 cut(s) 123, 306, 621
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 9, 173
HpyCH4III ACNGT 1 cut(s) 650
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 3 cut(s) 311, 551, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 569
HpyF3I CTNAG 4 cut(s) 31, 71, 77, 185
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 5 cut(s) 50, 102, 137, 177, 596
Kzo9I GATC 1 cut(s) 610
LmnI GCTCC 3 cut(s) 195, 377, 479
Lsp1109I GCAGC 1 cut(s) 581
MaeI CTAG 1 cut(s) 573
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 527
MalI GATC 1 cut(s) 612
MboI GATC 1 cut(s) 610
MboII GAAGA 4 cut(s) 136, 151, 203, 256
MflI RGATCY 1 cut(s) 610
MnlI CCTC 5 cut(s) 211, 217, 310, 505, 550
MseI TTAA 4 cut(s) 428, 599, 684, 702
MspCI CTTAAG 1 cut(s) 701
MspI CCGG 2 cut(s) 415, 614
MspR9I CCNGG 2 cut(s) 420, 644
MvaI CCWGG 2 cut(s) 420, 644
MwoI GCNNNNNNNGC 2 cut(s) 148, 569
NdeII GATC 1 cut(s) 610
NlaIII CATG 5 cut(s) 50, 102, 137, 177, 596
NlaIV GGNNCC 3 cut(s) 191, 296, 641
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PflFI GACNNNGTC 1 cut(s) 650
PflMI CCANNNNNTGG 1 cut(s) 47
PkrI GCNGC 1 cut(s) 571
PsiI TTATAA 1 cut(s) 663
Psp6I CCWGG 2 cut(s) 418, 642
PspGI CCWGG 2 cut(s) 418, 642
PspN4I GGNNCC 3 cut(s) 191, 296, 641
PspPI GGNCC 1 cut(s) 621
PsuI RGATCY 1 cut(s) 610
PsyI GACNNNGTC 1 cut(s) 650
RsaI GTAC 2 cut(s) 114, 676
RsaNI GTAC 2 cut(s) 113, 675
SaqAI TTAA 4 cut(s) 428, 599, 684, 702
SatI GCNGC 1 cut(s) 570
Sau3AI GATC 1 cut(s) 610
Sau96I GGNCC 1 cut(s) 621
ScaI AGTACT 1 cut(s) 676
ScrFI CCNGG 2 cut(s) 420, 644
SinI GGWCC 1 cut(s) 621
SmlI CTYRAG 2 cut(s) 670, 701
SmoI CTYRAG 2 cut(s) 670, 701
SsiI CCGC 2 cut(s) 322, 582
SspMI CTAG 1 cut(s) 573
StyD4I CCNGG 2 cut(s) 418, 642
TaaI ACNGT 1 cut(s) 650
TaiI ACGT 1 cut(s) 252
TaqI TCGA 2 cut(s) 336, 577
TatI WGTACW 2 cut(s) 112, 674
Tru1I TTAA 4 cut(s) 428, 599, 684, 702
Tru9I TTAA 4 cut(s) 428, 599, 684, 702
TscAI CASTG 1 cut(s) 655
TseI GCWGC 1 cut(s) 569
TspDTI ATGAA 5 cut(s) 35, 87, 203, 474, 622
TspRI CASTG 1 cut(s) 655
Tth111I GACNNNGTC 1 cut(s) 650
Van91I CCANNNNNTGG 1 cut(s) 47
Vha464I CTTAAG 1 cut(s) 701
VpaK11BI GGWCC 1 cut(s) 621
XspI CTAG 1 cut(s) 573
ZrmI AGTACT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.