Rw7G004590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0011346
Physical Location & Seq
Forward (+)
3849054 .. 3850587
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G004590.1

Sequence Viewer

Length: 705 bp
ATGGCAAACCCCAGAAGGAACAGCCAGAGCTTAGAGAACCCATTTCATGGTCAAAGCCAAAGCCGAAGCCTAAGCCTAAACCAAAGCGTTTCATGGTCATCACTTGTACACTTTCTGAAGAAGCCCCATGCCTTGCCTTTTCTGCTCTCAATCTTCCTTCTGCTTACATGGGTCTCTCTCAGGCTCCAGCACTCCTCGTCCTCTCCTCATTCTCATAATATCAATACACCATTACAGAAGAACATCAAGGACGACAGCAAGGCCAATCTCGTTAGGTTCGGTTCTGGGTTCCCCTCTCGGATTGCAAAAGATAAGCGGGGATGGTTGCTCGACCCCATTTCCCTTGCCCAACAATCTGGCATTTTGGGTGGAGCTGTGATTTGTGCTTCAATCCATCTTGGAGAAATCCGGCCTGGTGCTTTAAGGGGAAACCACAGACACCATTCTTGTAATGAAACGTTTGTCATATGGGGAGCAGAAACAAGGTTTAGGCTGGAGAATGATGAGGTAGATGATAAAGGTTACGCTGAAGTCACCATTGCTGCAGATGAGGTTGCTGTTGCAGCTAGTCGAAGCGGAACTGCGCATGCTTTAATAAACATAGATCCGGTTCGGACCACATACTTCATAGGGTGCCAGGACAGTGTCATAGATTATAACAGCTCAAGTACTGATTTTAATGTCTGGGAAAGTCTTAAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

25.92

Weight (kDa)

8.49

Isoelectric Point (pI)

55.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polysacc_synt_C PF14667 132 - 203 7.6e-06 Polysaccharide biosynthesis C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56820 AT3G56820 AT3G56820
fragaria_vesca FvH4_1g29600 FvH4_1g29600 FvH4_1g29600 FvH4_1g29600
malus_domestica MD12G1111100.v1.1
prunus_persica Prupe.7G023500_v2.0.a1 Prupe.7G023500_v2.0.a1
pyrus_communis pycom12g09330
rosa_chinensis RchiOBHm_Chr7g0183121
rosa_laevigata RLG00000005077
rosa_multiflora Rmu_ssc0000111.1_g000009
rosa_roxburghii Rroxscaffold_3G00270740
rosa_rugosa Rorug06G0453300
rosa_samantha Rh7AG056300 Rh7BG055600 Rh7DG055800
rosa_wichuraiana Rw7G004590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 657
Acc16I TGCGCA 1 cut(s) 585
AccB1I GGYRCC 1 cut(s) 633
AccB7I CCANNNNNTGG 1 cut(s) 47
AciI CCGC 2 cut(s) 316, 576
AclI AACGTT 1 cut(s) 458
AclWI GGATC 1 cut(s) 599
AcuI CTGAAG 2 cut(s) 137, 549
AfaI GTAC 2 cut(s) 108, 670
AfiI CCNNNNNNNGG 1 cut(s) 47
AflII CTTAAG 1 cut(s) 695
AgsI TTSAA 1 cut(s) 390
AjnI CCWGG 2 cut(s) 412, 636
AluBI AGCT 4 cut(s) 30, 374, 566, 663
AluI AGCT 4 cut(s) 30, 374, 566, 663
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 1 cut(s) 599
AoxI GGCC 2 cut(s) 261, 410
ApeKI GCWGC 2 cut(s) 542, 563
AspLEI GCGC 1 cut(s) 586
AspS9I GGNCC 1 cut(s) 615
AsuHPI GGTGA 1 cut(s) 526
AvaII GGWCC 1 cut(s) 615
BanI GGYRCC 1 cut(s) 633
BbvI GCAGC 2 cut(s) 529, 575
BccI CCATC 2 cut(s) 315, 402
BciT130I CCWGG 2 cut(s) 414, 638
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 1 cut(s) 567
BfmI CTRYAG 1 cut(s) 543
BfrI CTTAAG 1 cut(s) 695
BisI GCNGC 2 cut(s) 543, 564
BlsI GCNGC 2 cut(s) 544, 565
BmcAI AGTACT 1 cut(s) 670
Bme1390I CCNGG 2 cut(s) 414, 638
Bme18I GGWCC 1 cut(s) 615
BmgT120I GGNCC 1 cut(s) 615
BmiI GGNNCC 3 cut(s) 185, 290, 635
BmrFI CCNGG 2 cut(s) 414, 638
BpmI CTGGAG 2 cut(s) 170, 515
Bpu10I CCTNAGC 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 649
BsaI GGTCTC 1 cut(s) 178
BsaWI WCCGGW 1 cut(s) 607
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 537
BseBI CCWGG 2 cut(s) 414, 638
BseGI GGATG 1 cut(s) 326
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 1 cut(s) 193
BseRI GAGGAG 2 cut(s) 184, 195
BseXI GCAGC 2 cut(s) 529, 575
BshFI GGCC 2 cut(s) 263, 412
BshNI GGYRCC 1 cut(s) 633
BsiSI CCGG 2 cut(s) 409, 608
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 178
BsnI GGCC 2 cut(s) 263, 412
Bso31I GGTCTC 1 cut(s) 178
Bsp1407I TGTACA 1 cut(s) 106
Bsp143I GATC 1 cut(s) 604
BspACI CCGC 2 cut(s) 316, 576
BspANI GGCC 2 cut(s) 263, 412
BspCNI CTCAG 1 cut(s) 192
BspLI GGNNCC 3 cut(s) 185, 290, 635
BspMAI CTGCAG 1 cut(s) 547
BspPI GGATC 1 cut(s) 599
BspT107I GGYRCC 1 cut(s) 633
BspTI CTTAAG 1 cut(s) 695
BspTNI GGTCTC 1 cut(s) 178
BsrDI GCAATG 1 cut(s) 537
BsrGI TGTACA 1 cut(s) 106
BssMI GATC 1 cut(s) 604
Bst2UI CCWGG 2 cut(s) 414, 638
Bst4CI ACNGT 1 cut(s) 644
BstAFI CTTAAG 1 cut(s) 695
BstAUI TGTACA 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 588
BstDEI CTNAG 3 cut(s) 31, 71, 179
BstF5I GGATG 1 cut(s) 326
BstHHI GCGC 1 cut(s) 586
BstKTI GATC 1 cut(s) 607
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 1 cut(s) 604
BstMWI GCNNNNNNNGC 2 cut(s) 142, 563
BstNI CCWGG 2 cut(s) 414, 638
BstNSI RCATGY 1 cut(s) 590
BstSCI CCNGG 2 cut(s) 412, 636
BstSFI CTRYAG 1 cut(s) 543
BstV1I GCAGC 2 cut(s) 529, 575
BstX2I RGATCY 1 cut(s) 604
BstXI CCANNNNNNTGG 1 cut(s) 356
BstYI RGATCY 1 cut(s) 604
BsuRI GGCC 2 cut(s) 263, 412
BtsCI GGATG 1 cut(s) 326
BtsIMutI CAGTG 1 cut(s) 649
Cac8I GCNNGC 1 cut(s) 588
CfoI GCGC 1 cut(s) 586
Cfr13I GGNCC 1 cut(s) 615
Csp6I GTAC 2 cut(s) 107, 669
CviAII CATG 5 cut(s) 47, 93, 128, 168, 587
CviQI GTAC 2 cut(s) 107, 669
DdeI CTNAG 3 cut(s) 31, 71, 179
DpnI GATC 1 cut(s) 606
DpnII GATC 1 cut(s) 604
Eco31I GGTCTC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 615
Eco57I CTGAAG 2 cut(s) 137, 549
EcoRII CCWGG 2 cut(s) 412, 636
FaeI CATG 5 cut(s) 50, 96, 131, 171, 590
FatI CATG 5 cut(s) 46, 92, 127, 167, 586
FauI CCCGC 1 cut(s) 309
FauNDI CATATG 1 cut(s) 467
Fnu4HI GCNGC 2 cut(s) 543, 564
FokI GGATG 1 cut(s) 333
Fsp4HI GCNGC 2 cut(s) 543, 564
FspBI CTAG 1 cut(s) 567
FspI TGCGCA 1 cut(s) 585
GlaI GCGC 1 cut(s) 585
GluI GCNGC 2 cut(s) 543, 564
GsuI CTGGAG 2 cut(s) 170, 515
HaeIII GGCC 2 cut(s) 263, 412
HapII CCGG 2 cut(s) 409, 608
HhaI GCGC 1 cut(s) 586
Hin1II CATG 5 cut(s) 50, 96, 131, 171, 590
Hin6I GCGC 1 cut(s) 584
HinP1I GCGC 1 cut(s) 584
HpaII CCGG 2 cut(s) 409, 608
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 3 cut(s) 117, 300, 615
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 2 cut(s) 9, 167
HpyCH4III ACNGT 1 cut(s) 644
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 3 cut(s) 305, 545, 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 563
HpyF3I CTNAG 3 cut(s) 31, 71, 179
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 5 cut(s) 50, 96, 131, 171, 590
HspAI GCGC 1 cut(s) 584
Kzo9I GATC 1 cut(s) 604
LmnI GCTCC 3 cut(s) 189, 371, 473
Lsp1109I GCAGC 2 cut(s) 529, 575
MaeI CTAG 1 cut(s) 567
MaeII ACGT 1 cut(s) 458
MaeIII GTNAC 2 cut(s) 521, 532
MalI GATC 1 cut(s) 606
MboI GATC 1 cut(s) 604
MboII GAAGA 3 cut(s) 130, 145, 250
MflI RGATCY 1 cut(s) 604
MnlI CCTC 6 cut(s) 205, 211, 216, 304, 499, 544
MseI TTAA 4 cut(s) 422, 593, 678, 696
MspCI CTTAAG 1 cut(s) 695
MspI CCGG 2 cut(s) 409, 608
MspR9I CCNGG 2 cut(s) 414, 638
MvaI CCWGG 2 cut(s) 414, 638
MwoI GCNNNNNNNGC 2 cut(s) 142, 563
NdeI CATATG 1 cut(s) 467
NdeII GATC 1 cut(s) 604
NlaIII CATG 5 cut(s) 50, 96, 131, 171, 590
NlaIV GGNNCC 3 cut(s) 185, 290, 635
NmuCI GTSAC 1 cut(s) 532
NsbI TGCGCA 1 cut(s) 585
NspI RCATGY 1 cut(s) 590
PaeI GCATGC 1 cut(s) 590
PflFI GACNNNGTC 1 cut(s) 644
PflMI CCANNNNNTGG 1 cut(s) 47
PkrI GCNGC 2 cut(s) 544, 565
PsiI TTATAA 1 cut(s) 657
Psp1406I AACGTT 1 cut(s) 458
Psp6I CCWGG 2 cut(s) 412, 636
PspGI CCWGG 2 cut(s) 412, 636
PspN4I GGNNCC 3 cut(s) 185, 290, 635
PspPI GGNCC 1 cut(s) 615
PstI CTGCAG 1 cut(s) 547
PsuI RGATCY 1 cut(s) 604
PsyI GACNNNGTC 1 cut(s) 644
RsaI GTAC 2 cut(s) 108, 670
RsaNI GTAC 2 cut(s) 107, 669
SaqAI TTAA 4 cut(s) 422, 593, 678, 696
SatI GCNGC 2 cut(s) 543, 564
Sau3AI GATC 1 cut(s) 604
Sau96I GGNCC 1 cut(s) 615
ScaI AGTACT 1 cut(s) 670
ScrFI CCNGG 2 cut(s) 414, 638
SfcI CTRYAG 1 cut(s) 543
SinI GGWCC 1 cut(s) 615
SmlI CTYRAG 2 cut(s) 664, 695
SmoI CTYRAG 2 cut(s) 664, 695
SphI GCATGC 1 cut(s) 590
SsiI CCGC 2 cut(s) 316, 576
SspMI CTAG 1 cut(s) 567
StyD4I CCNGG 2 cut(s) 412, 636
TaaI ACNGT 1 cut(s) 644
TaiI ACGT 1 cut(s) 461
TaqI TCGA 2 cut(s) 330, 571
TatI WGTACW 2 cut(s) 106, 668
Tru1I TTAA 4 cut(s) 422, 593, 678, 696
Tru9I TTAA 4 cut(s) 422, 593, 678, 696
TscAI CASTG 1 cut(s) 649
TseFI GTSAC 1 cut(s) 532
TseI GCWGC 2 cut(s) 542, 563
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 4 cut(s) 35, 81, 468, 616
TspRI CASTG 1 cut(s) 649
Tth111I GACNNNGTC 1 cut(s) 644
Van91I CCANNNNNTGG 1 cut(s) 47
Vha464I CTTAAG 1 cut(s) 695
VpaK11BI GGWCC 1 cut(s) 615
XceI RCATGY 1 cut(s) 590
XspI CTAG 1 cut(s) 567
ZrmI AGTACT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.