RLG00000005077

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0011346
Physical Location & Seq
Reverse (-)
64843469 .. 64844267
799 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005077

Sequence Viewer

Length: 708 bp
ATGGCAAACCCCAGAAGGAACAGCCAGAGCTCAGAGAACCCATTTCATGGTCAAAGCCAAAGCCGAAGCCTAAGCCTAAACCAAAGCGTTTCATGGTCATCACTTGTACACTTTCTGAAGAAGCCCCACGCCTTGCCTTTTCTGCTCTCAATCTTGCTTCTGCTTACATGGGTCTCTCTCAGGCTCCAGCAGCACTCCTCGTCCTCTCTTCGTTCTCATAATATCAATACACCATTACAGAAGAACATCAAGGACGACAGCAAGGCCAATCTCGTTAGGTTCGGTTCTGGGTTCCCCTCTCGGATTGCAAAAGACAAGCGGGGATGGTTGCTCGACCCCATTTCCCTTGCCCAACAATCTGGCATTTTGGGGGGAGCTGTGATTTGTGCTTCAATCCATCTTGGAGAAATCCGGCCTGGTGCTTTAAGGGGGAACCACAGACACCATTCTTGTAATGAAACATTTGTCATATGGGGAGCGGAAACAAGGTTTAGGCTGGAGAACGATGAGGTAGATGATAAAGGTTACGCTGAAGTCATCATTGGTGCAGATGAGGTTGCTGTTGCAGCTAGCCGAAGCGGAACTGCTCATGCTTTAATAAACATAGATCCGGTACGGACCACATACTTCATAGGGTGCCAGGACAGTGTCATAGATTATAACAGCTCAAGTACTGATTTTAATGTCTGGGAGAGTCCTAGGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

26.03

Weight (kDa)

8.86

Isoelectric Point (pI)

61.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56820 AT3G56820 AT3G56820
fragaria_vesca FvH4_1g29600 FvH4_1g29600 FvH4_1g29600 FvH4_1g29600
malus_domestica MD12G1111100.v1.1
prunus_persica Prupe.7G023500_v2.0.a1 Prupe.7G023500_v2.0.a1
pyrus_communis pycom12g09330
rosa_chinensis RchiOBHm_Chr7g0183121
rosa_laevigata RLG00000005077
rosa_multiflora Rmu_ssc0000111.1_g000009
rosa_roxburghii Rroxscaffold_3G00270740
rosa_rugosa Rorug06G0453300
rosa_samantha Rh7AG056300 Rh7BG055600 Rh7DG055800
rosa_wichuraiana Rw7G004590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 660
AccB1I GGYRCC 1 cut(s) 636
AccB7I CCANNNNNTGG 1 cut(s) 47
AccBSI CCGCTC 1 cut(s) 479
AciI CCGC 3 cut(s) 319, 479, 579
AclWI GGATC 1 cut(s) 602
AcuI CTGAAG 2 cut(s) 137, 552
AfaI GTAC 3 cut(s) 108, 615, 673
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 1 cut(s) 393
AjnI CCWGG 2 cut(s) 415, 639
AjuI GAANNNNNNNTTGG 2 cut(s) 525, 557
AluBI AGCT 4 cut(s) 30, 377, 569, 666
AluI AGCT 4 cut(s) 30, 377, 569, 666
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 1 cut(s) 602
AoxI GGCC 2 cut(s) 264, 413
ApeKI GCWGC 2 cut(s) 190, 566
AspA2I CCTAGG 1 cut(s) 698
AspS9I GGNCC 1 cut(s) 618
AsuNHI GCTAGC 1 cut(s) 569
AvaII GGWCC 1 cut(s) 618
AvrII CCTAGG 1 cut(s) 698
BanI GGYRCC 1 cut(s) 636
BanII GRGCYC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 202, 578
BccI CCATC 2 cut(s) 318, 405
BciT130I CCWGG 2 cut(s) 417, 641
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 2 cut(s) 570, 699
BisI GCNGC 2 cut(s) 191, 567
BlnI CCTAGG 1 cut(s) 698
BlsI GCNGC 2 cut(s) 192, 568
BmcAI AGTACT 1 cut(s) 673
Bme1390I CCNGG 2 cut(s) 417, 641
Bme18I GGWCC 1 cut(s) 618
BmgT120I GGNCC 1 cut(s) 618
BmiI GGNNCC 4 cut(s) 185, 293, 434, 638
BmrFI CCNGG 2 cut(s) 417, 641
BmtI GCTAGC 1 cut(s) 573
BpmI CTGGAG 2 cut(s) 170, 518
Bpu10I CCTNAGC 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 652
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 698
BsaWI WCCGGW 1 cut(s) 610
Bsc4I CCNNNNNNNGG 1 cut(s) 47
BseBI CCWGG 2 cut(s) 417, 641
BseDI CCNNGG 1 cut(s) 698
BseGI GGATG 1 cut(s) 329
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 2 cut(s) 45, 193
BseRI GAGGAG 1 cut(s) 187
BseXI GCAGC 2 cut(s) 202, 578
BsgI GTGCAG 1 cut(s) 567
BshFI GGCC 2 cut(s) 266, 415
BshNI GGYRCC 1 cut(s) 636
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 2 cut(s) 412, 611
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 178
BsnI GGCC 2 cut(s) 266, 415
Bso31I GGTCTC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 32
Bsp1407I TGTACA 1 cut(s) 106
Bsp143I GATC 1 cut(s) 607
BspACI CCGC 3 cut(s) 319, 479, 579
BspANI GGCC 2 cut(s) 266, 415
BspCNI CTCAG 2 cut(s) 44, 192
BspLI GGNNCC 4 cut(s) 185, 293, 434, 638
BspOI GCTAGC 1 cut(s) 573
BspPI GGATC 1 cut(s) 602
BspT107I GGYRCC 1 cut(s) 636
BspTNI GGTCTC 1 cut(s) 178
BsrBI CCGCTC 1 cut(s) 479
BsrGI TGTACA 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 698
BssMI GATC 1 cut(s) 607
BssT1I CCWWGG 1 cut(s) 698
Bst2UI CCWGG 2 cut(s) 417, 641
Bst4CI ACNGT 1 cut(s) 647
Bst6I CTCTTC 1 cut(s) 213
BstAUI TGTACA 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 571
BstDEI CTNAG 3 cut(s) 31, 71, 179
BstF5I GGATG 1 cut(s) 329
BstKTI GATC 1 cut(s) 610
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 1 cut(s) 607
BstMWI GCNNNNNNNGC 3 cut(s) 142, 190, 566
BstNI CCWGG 2 cut(s) 417, 641
BstSCI CCNGG 2 cut(s) 415, 639
BstV1I GCAGC 2 cut(s) 202, 578
BstX2I RGATCY 1 cut(s) 607
BstXI CCANNNNNNTGG 1 cut(s) 359
BstYI RGATCY 1 cut(s) 607
BsuRI GGCC 2 cut(s) 266, 415
BtsCI GGATG 1 cut(s) 329
BtsIMutI CAGTG 1 cut(s) 652
Cac8I GCNNGC 1 cut(s) 571
Cfr13I GGNCC 1 cut(s) 618
Csp6I GTAC 3 cut(s) 107, 614, 672
CviAII CATG 4 cut(s) 47, 93, 168, 590
CviQI GTAC 3 cut(s) 107, 614, 672
DdeI CTNAG 3 cut(s) 31, 71, 179
DpnI GATC 1 cut(s) 609
DpnII GATC 1 cut(s) 607
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Ecl136II GAGCTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 698
Eco24I GRGCYC 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 618
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 137, 552
EcoICRI GAGCTC 1 cut(s) 30
EcoRII CCWGG 2 cut(s) 415, 639
EcoT14I CCWWGG 1 cut(s) 698
EcoT38I GRGCYC 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 698
FaeI CATG 4 cut(s) 50, 96, 171, 593
FatI CATG 4 cut(s) 46, 92, 167, 589
FauI CCCGC 1 cut(s) 312
FauNDI CATATG 1 cut(s) 470
Fnu4HI GCNGC 2 cut(s) 191, 567
FokI GGATG 1 cut(s) 336
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 2 cut(s) 191, 567
FspBI CTAG 2 cut(s) 570, 699
GluI GCNGC 2 cut(s) 191, 567
GsuI CTGGAG 2 cut(s) 170, 518
HaeIII GGCC 2 cut(s) 266, 415
HapII CCGG 2 cut(s) 412, 611
Hin1II CATG 4 cut(s) 50, 96, 171, 593
HinfI GANTC 1 cut(s) 694
HpaII CCGG 2 cut(s) 412, 611
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 3 cut(s) 34, 117, 303
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 9
HpyCH4III ACNGT 1 cut(s) 647
HpyCH4V TGCA 3 cut(s) 308, 548, 566
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 190, 566
HpyF3I CTNAG 3 cut(s) 31, 71, 179
Hsp92II CATG 4 cut(s) 50, 96, 171, 593
Kzo9I GATC 1 cut(s) 607
LmnI GCTCC 3 cut(s) 189, 374, 476
Lsp1109I GCAGC 2 cut(s) 202, 578
MaeI CTAG 2 cut(s) 570, 699
MaeIII GTNAC 1 cut(s) 524
MalI GATC 1 cut(s) 609
MbiI CCGCTC 1 cut(s) 479
MboI GATC 1 cut(s) 607
MboII GAAGA 3 cut(s) 130, 200, 253
MflI RGATCY 1 cut(s) 607
MhlI GDGCHC 1 cut(s) 32
MlyI GAGTC 1 cut(s) 703
MnlI CCTC 5 cut(s) 208, 214, 307, 502, 547
MseI TTAA 3 cut(s) 425, 596, 681
MspI CCGG 2 cut(s) 412, 611
MspR9I CCNGG 2 cut(s) 417, 641
MvaI CCWGG 2 cut(s) 417, 641
MwoI GCNNNNNNNGC 3 cut(s) 142, 190, 566
NdeI CATATG 1 cut(s) 470
NdeII GATC 1 cut(s) 607
NheI GCTAGC 1 cut(s) 569
NlaIII CATG 4 cut(s) 50, 96, 171, 593
NlaIV GGNNCC 4 cut(s) 185, 293, 434, 638
PflFI GACNNNGTC 1 cut(s) 647
PflMI CCANNNNNTGG 1 cut(s) 47
PkrI GCNGC 2 cut(s) 192, 568
PleI GAGTC 1 cut(s) 702
PpsI GAGTC 1 cut(s) 702
PsiI TTATAA 1 cut(s) 660
Psp124BI GAGCTC 1 cut(s) 32
Psp6I CCWGG 2 cut(s) 415, 639
PspGI CCWGG 2 cut(s) 415, 639
PspN4I GGNNCC 4 cut(s) 185, 293, 434, 638
PspPI GGNCC 1 cut(s) 618
PsuI RGATCY 1 cut(s) 607
PsyI GACNNNGTC 1 cut(s) 647
RsaI GTAC 3 cut(s) 108, 615, 673
RsaNI GTAC 3 cut(s) 107, 614, 672
SacI GAGCTC 1 cut(s) 32
SaqAI TTAA 3 cut(s) 425, 596, 681
SatI GCNGC 2 cut(s) 191, 567
Sau3AI GATC 1 cut(s) 607
Sau96I GGNCC 1 cut(s) 618
ScaI AGTACT 1 cut(s) 673
SchI GAGTC 1 cut(s) 703
ScrFI CCNGG 2 cut(s) 417, 641
SduI GDGCHC 1 cut(s) 32
SetI ASST 9 cut(s) 32, 281, 379, 491, 513, 526, 558, 571, 668
SinI GGWCC 1 cut(s) 618
SmlI CTYRAG 1 cut(s) 667
SmoI CTYRAG 1 cut(s) 667
SsiI CCGC 3 cut(s) 319, 479, 579
SspMI CTAG 2 cut(s) 570, 699
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 2 cut(s) 415, 639
StyI CCWWGG 1 cut(s) 698
TaaI ACNGT 1 cut(s) 647
TaqI TCGA 1 cut(s) 333
TatI WGTACW 2 cut(s) 106, 671
Tru1I TTAA 3 cut(s) 425, 596, 681
Tru9I TTAA 3 cut(s) 425, 596, 681
TscAI CASTG 1 cut(s) 652
TseI GCWGC 2 cut(s) 190, 566
TspDTI ATGAA 4 cut(s) 35, 81, 471, 619
TspGWI ACGGA 1 cut(s) 631
TspRI CASTG 1 cut(s) 652
Tth111I GACNNNGTC 1 cut(s) 647
Van91I CCANNNNNTGG 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 618
XmaJI CCTAGG 1 cut(s) 698
XspI CTAG 2 cut(s) 570, 699
ZrmI AGTACT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.