Rmu_ssc0000111.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000111.1
OG0011346
Physical Location & Seq
Forward (+)
34499 .. 35905
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000111.1_g000009.1.cds

Sequence Viewer

Length: 996 bp
atgaccatatcctatgtgcaatgtcaaaggagtattgagaagcgaattcgacaagacagagcggaggaagtgatggcaaaccccagaaggaacagccagagcttagagaacccatttcatggtcaaagccaaagccaaagccaaagccgaagcctaagcctaaaccaaagcgtttcatggtcatcacttgtacactttctgaagaagccccatgccttgccttttctgctctcaatcttccttctgcttacatgggtctctctcaggctccagcactcctcgtcctctcctcattctcataatatcaatacaccattacagaagaacatcaaggatgacagcaaggccaatctcgttaggttcggttctgggttcccctctcggattgcaaaagataagcggggatggttgctcgaccccatttcccttgcccaacaatctggcattttgggtggagctgtgatttgtgcttcaatccatcttggagaaatccggcctggtgctttaaggggaaaccacagacaccattcttgtaatgaaacgtttgtcatatggggagcagaaacaaggtttaggctggagaatgatgaggtagatgataagggttacgctgaagtcaccattgctgcagatgaggttgctgttgcagctagtcgaagcggaactgcgcatgctttaataaacatagatccggttcggaccacatacttcatagggggaaaccacagacaccattcttgtaatgaaacgtttgtcatatggggagcagaaacaaggtttaggctggagaatgatgaggtagatgataagggttacgctgaagtcaccattgctgcagatgaggttgctgttgcagctagtcgaagcggaactgcccacgctttaataaacatagatccggctcggaccacgtacttcatagggtgccaggacagtgtcatagattataacagctcaagtactgattttaatgtctgggaaagtcttaagcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

36.84

Weight (kDa)

6.76

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56820 AT3G56820 AT3G56820
fragaria_vesca FvH4_1g29600 FvH4_1g29600 FvH4_1g29600 FvH4_1g29600
malus_domestica MD12G1111100.v1.1
prunus_persica Prupe.7G023500_v2.0.a1 Prupe.7G023500_v2.0.a1
pyrus_communis pycom12g09330
rosa_chinensis RchiOBHm_Chr7g0183121
rosa_laevigata RLG00000005077
rosa_multiflora Rmu_ssc0000111.1_g000009
rosa_roxburghii Rroxscaffold_3G00270740
rosa_rugosa Rorug06G0453300
rosa_samantha Rh7AG056300 Rh7BG055600 Rh7DG055800
rosa_wichuraiana Rw7G004590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 948
Acc16I TGCGCA 1 cut(s) 669
AccB1I GGYRCC 1 cut(s) 924
AccB7I CCANNNNNTGG 1 cut(s) 119
AccBSI CCGCTC 1 cut(s) 62
AciI CCGC 4 cut(s) 62, 400, 660, 867
AclI AACGTT 2 cut(s) 542, 749
AclWI GGATC 2 cut(s) 683, 890
AcsI RAATTY 1 cut(s) 45
AcuI CTGAAG 3 cut(s) 221, 633, 840
AfaI GTAC 3 cut(s) 192, 914, 961
AfiI CCNNNNNNNGG 1 cut(s) 119
AflII CTTAAG 1 cut(s) 986
AgsI TTSAA 1 cut(s) 474
AjnI CCWGG 2 cut(s) 496, 927
AluBI AGCT 5 cut(s) 102, 458, 650, 857, 954
AluI AGCT 5 cut(s) 102, 458, 650, 857, 954
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 2 cut(s) 683, 890
AoxI GGCC 2 cut(s) 345, 494
ApeKI GCWGC 4 cut(s) 626, 647, 833, 854
ApoI RAATTY 1 cut(s) 45
AspLEI GCGC 1 cut(s) 670
AspS9I GGNCC 2 cut(s) 699, 906
AsuHPI GGTGA 2 cut(s) 610, 817
AvaII GGWCC 2 cut(s) 699, 906
BanI GGYRCC 1 cut(s) 924
BbvI GCAGC 4 cut(s) 613, 659, 820, 866
BccI CCATC 3 cut(s) 67, 399, 486
BciT130I CCWGG 2 cut(s) 498, 929
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 2 cut(s) 651, 858
BfmI CTRYAG 2 cut(s) 627, 834
BfrI CTTAAG 1 cut(s) 986
BisI GCNGC 4 cut(s) 627, 648, 834, 855
BlsI GCNGC 4 cut(s) 628, 649, 835, 856
BmcAI AGTACT 1 cut(s) 961
Bme1390I CCNGG 2 cut(s) 498, 929
Bme18I GGWCC 2 cut(s) 699, 906
BmgT120I GGNCC 2 cut(s) 699, 906
BmiI GGNNCC 3 cut(s) 269, 374, 926
BmrFI CCNGG 2 cut(s) 498, 929
BpmI CTGGAG 3 cut(s) 254, 599, 806
Bpu10I CCTNAGC 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 940
BsaAI YACGTR 1 cut(s) 912
BsaI GGTCTC 1 cut(s) 262
BsaWI WCCGGW 1 cut(s) 691
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse3DI GCAATG 3 cut(s) 26, 621, 828
BseBI CCWGG 2 cut(s) 498, 929
BseGI GGATG 2 cut(s) 340, 410
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 3 cut(s) 26, 621, 828
BseMII CTCAG 1 cut(s) 277
BseRI GAGGAG 2 cut(s) 268, 279
BseXI GCAGC 4 cut(s) 613, 659, 820, 866
BshFI GGCC 2 cut(s) 347, 496
BshNI GGYRCC 1 cut(s) 924
BsiSI CCGG 3 cut(s) 493, 692, 899
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 262
BsnI GGCC 2 cut(s) 347, 496
Bso31I GGTCTC 1 cut(s) 262
Bsp1407I TGTACA 1 cut(s) 190
Bsp143I GATC 2 cut(s) 688, 895
BspACI CCGC 4 cut(s) 62, 400, 660, 867
BspANI GGCC 2 cut(s) 347, 496
BspCNI CTCAG 1 cut(s) 276
BspLI GGNNCC 3 cut(s) 269, 374, 926
BspMAI CTGCAG 2 cut(s) 631, 838
BspPI GGATC 2 cut(s) 683, 890
BspT107I GGYRCC 1 cut(s) 924
BspTI CTTAAG 1 cut(s) 986
BspTNI GGTCTC 1 cut(s) 262
BsrBI CCGCTC 1 cut(s) 62
BsrDI GCAATG 3 cut(s) 26, 621, 828
BsrGI TGTACA 1 cut(s) 190
BssMI GATC 2 cut(s) 688, 895
Bst2UI CCWGG 2 cut(s) 498, 929
Bst4CI ACNGT 1 cut(s) 935
BstAFI CTTAAG 1 cut(s) 986
BstAUI TGTACA 1 cut(s) 190
BstBAI YACGTR 1 cut(s) 912
BstC8I GCNNGC 1 cut(s) 672
BstDEI CTNAG 3 cut(s) 103, 155, 263
BstF5I GGATG 2 cut(s) 340, 410
BstHHI GCGC 1 cut(s) 670
BstKTI GATC 2 cut(s) 691, 898
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 2 cut(s) 688, 895
BstMWI GCNNNNNNNGC 3 cut(s) 226, 647, 854
BstNI CCWGG 2 cut(s) 498, 929
BstNSI RCATGY 1 cut(s) 674
BstSCI CCNGG 2 cut(s) 496, 927
BstSFI CTRYAG 2 cut(s) 627, 834
BstV1I GCAGC 4 cut(s) 613, 659, 820, 866
BstX2I RGATCY 2 cut(s) 688, 895
BstXI CCANNNNNNTGG 1 cut(s) 440
BstYI RGATCY 2 cut(s) 688, 895
BsuRI GGCC 2 cut(s) 347, 496
BtsCI GGATG 2 cut(s) 340, 410
BtsIMutI CAGTG 1 cut(s) 940
Cac8I GCNNGC 1 cut(s) 672
CfoI GCGC 1 cut(s) 670
Cfr13I GGNCC 2 cut(s) 699, 906
Csp6I GTAC 3 cut(s) 191, 913, 960
CviAII CATG 5 cut(s) 119, 177, 212, 252, 671
CviQI GTAC 3 cut(s) 191, 913, 960
DdeI CTNAG 3 cut(s) 103, 155, 263
DpnI GATC 2 cut(s) 690, 897
DpnII GATC 2 cut(s) 688, 895
Eco31I GGTCTC 1 cut(s) 262
Eco47I GGWCC 2 cut(s) 699, 906
Eco57I CTGAAG 3 cut(s) 221, 633, 840
EcoRI GAATTC 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 496, 927
FaeI CATG 5 cut(s) 122, 180, 215, 255, 674
FatI CATG 5 cut(s) 118, 176, 211, 251, 670
FauI CCCGC 1 cut(s) 393
FauNDI CATATG 2 cut(s) 551, 758
Fnu4HI GCNGC 4 cut(s) 627, 648, 834, 855
FokI GGATG 2 cut(s) 347, 417
Fsp4HI GCNGC 4 cut(s) 627, 648, 834, 855
FspBI CTAG 2 cut(s) 651, 858
FspI TGCGCA 1 cut(s) 669
GlaI GCGC 1 cut(s) 669
GluI GCNGC 4 cut(s) 627, 648, 834, 855
GsuI CTGGAG 3 cut(s) 254, 599, 806
HaeIII GGCC 2 cut(s) 347, 496
HapII CCGG 3 cut(s) 493, 692, 899
HhaI GCGC 1 cut(s) 670
Hin1II CATG 5 cut(s) 122, 180, 215, 255, 674
Hin6I GCGC 1 cut(s) 668
HinP1I GCGC 1 cut(s) 668
HpaII CCGG 3 cut(s) 493, 692, 899
HphI GGTGA 2 cut(s) 610, 817
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 4 cut(s) 201, 384, 699, 906
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 81, 251
HpyCH4III ACNGT 1 cut(s) 935
HpyCH4IV ACGT 3 cut(s) 542, 749, 911
HpyCH4V TGCA 6 cut(s) 19, 389, 629, 647, 836, 854
HpyF10VI GCNNNNNNNGC 3 cut(s) 226, 647, 854
HpyF3I CTNAG 3 cut(s) 103, 155, 263
HpySE526I ACGT 3 cut(s) 542, 749, 911
Hsp92II CATG 5 cut(s) 122, 180, 215, 255, 674
HspAI GCGC 1 cut(s) 668
Kzo9I GATC 2 cut(s) 688, 895
LmnI GCTCC 4 cut(s) 273, 455, 557, 764
Lsp1109I GCAGC 4 cut(s) 613, 659, 820, 866
MaeI CTAG 2 cut(s) 651, 858
MaeII ACGT 3 cut(s) 542, 749, 911
MaeIII GTNAC 4 cut(s) 605, 616, 812, 823
MalI GATC 2 cut(s) 690, 897
MbiI CCGCTC 1 cut(s) 62
MboI GATC 2 cut(s) 688, 895
MboII GAAGA 3 cut(s) 214, 229, 334
MflI RGATCY 2 cut(s) 688, 895
MluCI AATT 1 cut(s) 45
MnlI CCTC 9 cut(s) 58, 289, 295, 300, 388, 583, 628, 790, 835
MseI TTAA 5 cut(s) 506, 677, 884, 969, 987
MspCI CTTAAG 1 cut(s) 986
MspI CCGG 3 cut(s) 493, 692, 899
MspR9I CCNGG 2 cut(s) 498, 929
MvaI CCWGG 2 cut(s) 498, 929
MwoI GCNNNNNNNGC 3 cut(s) 226, 647, 854
NdeI CATATG 2 cut(s) 551, 758
NdeII GATC 2 cut(s) 688, 895
NlaIII CATG 5 cut(s) 122, 180, 215, 255, 674
NlaIV GGNNCC 3 cut(s) 269, 374, 926
NmuCI GTSAC 2 cut(s) 616, 823
NsbI TGCGCA 1 cut(s) 669
NspI RCATGY 1 cut(s) 674
PaeI GCATGC 1 cut(s) 674
PflFI GACNNNGTC 1 cut(s) 935
PflMI CCANNNNNTGG 1 cut(s) 119
PkrI GCNGC 4 cut(s) 628, 649, 835, 856
Ppu21I YACGTR 1 cut(s) 912
PsiI TTATAA 1 cut(s) 948
Psp1406I AACGTT 2 cut(s) 542, 749
Psp6I CCWGG 2 cut(s) 496, 927
PspGI CCWGG 2 cut(s) 496, 927
PspN4I GGNNCC 3 cut(s) 269, 374, 926
PspPI GGNCC 2 cut(s) 699, 906
PstI CTGCAG 2 cut(s) 631, 838
PsuI RGATCY 2 cut(s) 688, 895
PsyI GACNNNGTC 1 cut(s) 935
RsaI GTAC 3 cut(s) 192, 914, 961
RsaNI GTAC 3 cut(s) 191, 913, 960
SaqAI TTAA 5 cut(s) 506, 677, 884, 969, 987
SatI GCNGC 4 cut(s) 627, 648, 834, 855
Sau3AI GATC 2 cut(s) 688, 895
Sau96I GGNCC 2 cut(s) 699, 906
ScaI AGTACT 1 cut(s) 961
ScrFI CCNGG 2 cut(s) 498, 929
SfcI CTRYAG 2 cut(s) 627, 834
SinI GGWCC 2 cut(s) 699, 906
SmlI CTYRAG 2 cut(s) 955, 986
SmoI CTYRAG 2 cut(s) 955, 986
SphI GCATGC 1 cut(s) 674
Sse9I AATT 1 cut(s) 45
SsiI CCGC 4 cut(s) 62, 400, 660, 867
SspMI CTAG 2 cut(s) 651, 858
StyD4I CCNGG 2 cut(s) 496, 927
TaaI ACNGT 1 cut(s) 935
TaiI ACGT 3 cut(s) 545, 752, 914
TaqI TCGA 4 cut(s) 49, 414, 655, 862
TasI AATT 1 cut(s) 45
TatI WGTACW 2 cut(s) 190, 959
Tru1I TTAA 5 cut(s) 506, 677, 884, 969, 987
Tru9I TTAA 5 cut(s) 506, 677, 884, 969, 987
TscAI CASTG 1 cut(s) 940
TseFI GTSAC 2 cut(s) 616, 823
TseI GCWGC 4 cut(s) 626, 647, 833, 854
Tsp45I GTSAC 2 cut(s) 616, 823
TspDTI ATGAA 6 cut(s) 107, 165, 552, 700, 759, 907
TspRI CASTG 1 cut(s) 940
Tth111I GACNNNGTC 1 cut(s) 935
Van91I CCANNNNNTGG 1 cut(s) 119
Vha464I CTTAAG 1 cut(s) 986
VpaK11BI GGWCC 2 cut(s) 699, 906
XapI RAATTY 1 cut(s) 45
XceI RCATGY 1 cut(s) 674
XspI CTAG 2 cut(s) 651, 858
ZrmI AGTACT 1 cut(s) 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.