Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010662

Physical Location & Seq

Genomic Coordinates Forward (+)

21073330 .. 21076315

Gene Structure 2986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGGCTTGGAATGAGACCAAACTCAAGAGGCTCTATCAAGTTTGGAGAGGAAGCAATAAATTTCTATGTGGCGGGAGGCTAATATTTGGTCCTGATGCATCATCTCTATATCTATCAACCATCTTGATCCTTGGTCCTGCTGTAATGTTCTTTGTCAAAATGTACACTAAAATGGCTGATCCTCGTACCAAGAATCCAAATCTATGTATTCCAATTCTCTGTGTGTCTTGGATACTCACAATTTTGGATATATTTTTCCTCTTAATGACATCTAGTAGAGATCCCGGGATTGTGCCAAGAAGTTTTAGGCCTCCGGAAACCGATGATGCACCGGATTCAACTACTCCATCGATGGAATGGGTTAGCGGTAGAACCCCTAATATAAGAATACCACGGGTCAAAGATGTAACTGTTAATGGACATACCGTAAAAGTGAAATTCTGTGACACTTGTTTGCTTTACCGTCCACCTAGAGCTTCTCATTGTTCCATATGCAACAACTGTGTCCAGAGATTTGATCATCACTGCCCTTGGGTTGGCCAGTGCATTGGAGTGCGAAATTACCGGTTCTTCTTCATGTTCATATCAACATCAACCACTCTGTGCATATATGTGTTTGCCTTTTCTTGGTTGAACATATTTCAAAGACATATGGATGAAAAGATTAGCATCTGGAAAGCTATATCCAAAGATGTTCTATCGGATATTCTCATAGTTTACTGCTTCATTACTGTTTGGTTTGTTGGAGGACTCACAATATTTCATTCCTATCTCATCTGTACTAACCAGACGACTTATGAGAATTTCCGATACCGTTATGATAAGAAGGAGAATCCATACAACAAAGGAATTTTGGGGAACATATGGGAAATATTTCTGTCTAAGATTCCTCCATCAATGAACAAGTTTAGATCATTTGTCAAGGAAGAAGATTATATGATGATGATGGTTGAAACTCCTACTTCAAATCTAGGTGAAAGTCTAGTTAGCTCGAAAGAGAAGATTGATATCGAAATGGGAGGAGGAAGGATTGTTGATGAGAGTGGAAAGAGCTACTCTCTACCTGAGATTCTCCGGAATCTAAACTATGAAGATCTTGAGGATGATTGTGAGGAAGATGACTTGAAGGCTAAGGATCATCACCACCACCATCACCATCAACATCAACATAATGAGGGAATCATCCCTCCTTTTGACCCTTTTTTTACCAATGAGATTGGTAGTAACAAAGATGAGAGAAATGGAGAAGAATCAGGAGGATCTTCAAGTGATGGTGAAAATACAGGGAAACGCGTTCGGGTCTCAGATGAAGATGAAGAGAAAGTTGAAGGGTATGAACGAAATTGGAGTACAGATAAAGGTATGAATATAAACGCAGGATCTGAAGATGGAGCAAGCTCTCCTGTATCCACTTCACCAATGCTTCGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005886 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030154 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035618 GO:0040007 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0099402 GO:0120025 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04391 map04391

Pfam Domains

Protein Families

DHHC

Protein Analysis

477

Amino Acids

54.78

Weight (kDa)

6.13

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	145 - 270	2.7e-36	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56930 AT3G56930
fragaria_vesca	FvH4_1g28800 FvH4_1g28800 FvH4_1g28800
malus_domestica	MD00G1107600.v1.1 MD14G1100600.v1.1
prunus_persica	Prupe.7G022600_v2.0.a1
pyrus_communis	pycom12g09230 pycom14g08900
rosa_chinensis	RchiOBHm_Chr3g0493221
rosa_laevigata	RLG00000022721
rosa_multiflora	Rmu_sc0003406.1_g000006
rosa_roxburghii	Rroxscaffold_6G00391740
rosa_rugosa	Rorug03G0259900
rosa_samantha	Rh3AG308800 Rh3BG344800 Rh3CG342000 Rh3DG344100
rosa_wichuraiana	Rw3G027150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1293
AccIII	TCCGGA	2 cut(s)	313, 1074
AciI	CCGC	2 cut(s)	72, 366
AclWI	GGATC	6 cut(s)	121, 173, 275, 1143, 1267, 1387
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	4 cut(s)	59, 437, 802, 849
AcuI	CTGAAG	1 cut(s)	1404
AdeI	CACNNNGTG	1 cut(s)	603
AfaI	GTAC	4 cut(s)	164, 187, 781, 1351
AfiI	CCNNNNNNNGG	2 cut(s)	536, 627
AflIII	ACRYGT	1 cut(s)	1291
AgeI	ACCGGT	1 cut(s)	564
AgsI	TTSAA	8 cut(s)	339, 634, 644, 953, 966, 1126, 1266, 1328
AluBI	AGCT	5 cut(s)	476, 680, 990, 1053, 1398
AluI	AGCT	5 cut(s)	476, 680, 990, 1053, 1398
Alw26I	GTCTC	2 cut(s)	8, 1306
AlwI	GGATC	6 cut(s)	121, 173, 275, 1143, 1267, 1387
AlwNI	CAGNNNCTG	1 cut(s)	1382
Ama87I	CYCGRG	1 cut(s)	284
Aor13HI	TCCGGA	2 cut(s)	313, 1074
AoxI	GGCC	2 cut(s)	308, 538
ApoI	RAATTY	4 cut(s)	59, 437, 802, 849
AsiGI	ACCGGT	1 cut(s)	564
Asp700I	GAANNNNTTC	1 cut(s)	873
AspS9I	GGNCC	2 cut(s)	89, 134
AsuC2I	CCSGG	2 cut(s)	285, 286
AsuHPI	GGTGA	5 cut(s)	986, 1133, 1145, 1286, 1407
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	2 cut(s)	89, 134
BalI	TGGCCA	1 cut(s)	540
BccI	CCATC	9 cut(s)	128, 346, 355, 901, 940, 1158, 1164, 1265, 1382
BciVI	GTATCC	2 cut(s)	225, 1417
BclI	TGATCA	1 cut(s)	517
BcnI	CCSGG	2 cut(s)	285, 286
BcoDI	GTCTC	2 cut(s)	8, 1306
BfaI	CTAG	4 cut(s)	273, 471, 971, 983
BfuI	GTATCC	2 cut(s)	225, 1417
BglII	AGATCT	1 cut(s)	1093
Bme1390I	CCNGG	2 cut(s)	285, 286
Bme18I	GGWCC	2 cut(s)	89, 134
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	89, 134
BmrFI	CCNGG	2 cut(s)	285, 286
BmsI	GCATC	4 cut(s)	85, 107, 316, 678
BplI	GAGNNNNNCTC	2 cut(s)	1042, 1074
Bpu10I	CCTNAGC	1 cut(s)	1131
BpuEI	CTTGAG	2 cut(s)	8, 1118
BpuMI	CCSGG	2 cut(s)	285, 286
Bsa29I	ATCGAT	1 cut(s)	350
BsaBI	GATNNNNATC	2 cut(s)	668, 1007
BsaI	GGTCTC	2 cut(s)	8, 1306
BsaJI	CCNNGG	4 cut(s)	130, 284, 392, 530
BsaWI	WCCGGW	4 cut(s)	313, 331, 564, 1074
Bsc4I	CCNNNNNNNGG	2 cut(s)	536, 627
Bse118I	RCCGGY	1 cut(s)	564
Bse1I	ACTGG	1 cut(s)	541
Bse8I	GATNNNNATC	2 cut(s)	668, 1007
BseAI	TCCGGA	2 cut(s)	313, 1074
BseCI	ATCGAT	1 cut(s)	350
BseDI	CCNNGG	4 cut(s)	130, 284, 392, 530
BseGI	GGATG	3 cut(s)	661, 1108, 1182
BseJI	GATNNNNATC	2 cut(s)	668, 1007
BseLI	CCNNNNNNNGG	2 cut(s)	536, 627
BseMII	CTCAG	2 cut(s)	1056, 1317
BseNI	ACTGG	1 cut(s)	541
BseRI	GAGGAG	1 cut(s)	1035
Bsh1236I	CGCG	1 cut(s)	1293
BshFI	GGCC	2 cut(s)	310, 540
BshTI	ACCGGT	1 cut(s)	564
BshVI	ATCGAT	1 cut(s)	350
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	5 cut(s)	285, 314, 332, 565, 1075
BslI	CCNNNNNNNGG	2 cut(s)	536, 627
BsmAI	GTCTC	2 cut(s)	8, 1306
BsnI	GGCC	2 cut(s)	310, 540
Bso31I	GGTCTC	2 cut(s)	8, 1306
BsoBI	CYCGRG	1 cut(s)	284
Bsp13I	TCCGGA	2 cut(s)	313, 1074
Bsp1407I	TGTACA	1 cut(s)	162
Bsp143I	GATC	9 cut(s)	126, 178, 280, 517, 911, 1093, 1135, 1259, 1379
BspACI	CCGC	2 cut(s)	72, 366
BspANI	GGCC	2 cut(s)	310, 540
BspCNI	CTCAG	2 cut(s)	1057, 1316
BspDI	ATCGAT	1 cut(s)	350
BspEI	TCCGGA	2 cut(s)	313, 1074
BspFNI	CGCG	1 cut(s)	1293
BspPI	GGATC	6 cut(s)	121, 173, 275, 1143, 1267, 1387
BspTNI	GGTCTC	2 cut(s)	8, 1306
BsrFI	RCCGGY	1 cut(s)	564
BsrGI	TGTACA	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	541
BssAI	RCCGGY	1 cut(s)	564
BssECI	CCNNGG	4 cut(s)	130, 284, 392, 530
BssMI	GATC	9 cut(s)	126, 178, 280, 517, 911, 1093, 1135, 1259, 1379
BssT1I	CCWWGG	2 cut(s)	130, 530
Bst4CI	ACNGT	6 cut(s)	412, 427, 464, 503, 733, 815
Bst6I	CTCTTC	1 cut(s)	1311
BstAUI	TGTACA	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	1396
BstDEI	CTNAG	4 cut(s)	882, 1065, 1131, 1303
BstDSI	CCRYGG	1 cut(s)	392
BstF5I	GGATG	3 cut(s)	661, 1108, 1182
BstFNI	CGCG	1 cut(s)	1293
BstKTI	GATC	9 cut(s)	129, 181, 283, 520, 914, 1096, 1138, 1262, 1382
BstMAI	GTCTC	2 cut(s)	8, 1306
BstMBI	GATC	9 cut(s)	126, 178, 280, 517, 911, 1093, 1135, 1259, 1379
BstSCI	CCNGG	2 cut(s)	283, 284
BstUI	CGCG	1 cut(s)	1293
BstX2I	RGATCY	4 cut(s)	280, 1093, 1259, 1379
BstXI	CCANNNNNNTGG	1 cut(s)	548
BstYI	RGATCY	4 cut(s)	280, 1093, 1259, 1379
Bsu15I	ATCGAT	1 cut(s)	350
BsuI	GTATCC	2 cut(s)	225, 1417
BsuRI	GGCC	2 cut(s)	310, 540
BsuTUI	ATCGAT	1 cut(s)	350
BtgI	CCRYGG	1 cut(s)	392
BtsCI	GGATG	3 cut(s)	661, 1108, 1182
BtsI	GCAGTG	1 cut(s)	523
BtsIMutI	CAGTG	2 cut(s)	523, 548
Cac8I	GCNNGC	1 cut(s)	1396
CaiI	CAGNNNCTG	1 cut(s)	1382
Cfr10I	RCCGGY	1 cut(s)	564
Cfr13I	GGNCC	2 cut(s)	89, 134
Cfr9I	CCCGGG	1 cut(s)	284
ClaI	ATCGAT	1 cut(s)	350
Csp6I	GTAC	4 cut(s)	163, 186, 780, 1350
CspAI	ACCGGT	1 cut(s)	564
CviAII	CATG	1 cut(s)	577
CviQI	GTAC	4 cut(s)	163, 186, 780, 1350
DdeI	CTNAG	4 cut(s)	882, 1065, 1131, 1303
DpnI	GATC	9 cut(s)	128, 180, 282, 519, 913, 1095, 1137, 1261, 1381
DpnII	GATC	9 cut(s)	126, 178, 280, 517, 911, 1093, 1135, 1259, 1379
DraIII	CACNNNGTG	1 cut(s)	603
EaeI	YGGCCR	1 cut(s)	538
Eam1104I	CTCTTC	1 cut(s)	1311
EarI	CTCTTC	1 cut(s)	1311
Eco130I	CCWWGG	2 cut(s)	130, 530
Eco147I	AGGCCT	1 cut(s)	310
Eco31I	GGTCTC	2 cut(s)	8, 1306
Eco32I	GATATC	1 cut(s)	1009
Eco47I	GGWCC	2 cut(s)	89, 134
Eco57I	CTGAAG	1 cut(s)	1404
Eco88I	CYCGRG	1 cut(s)	284
EcoRV	GATATC	1 cut(s)	1009
EcoT14I	CCWWGG	2 cut(s)	130, 530
EcoT22I	ATGCAT	1 cut(s)	100
ErhI	CCWWGG	2 cut(s)	130, 530
FaeI	CATG	1 cut(s)	580
FatI	CATG	1 cut(s)	576
FauI	CCCGC	1 cut(s)	65
FauNDI	CATATG	3 cut(s)	491, 651, 863
FbaI	TGATCA	1 cut(s)	517
FokI	GGATG	3 cut(s)	668, 1115, 1169
FspBI	CTAG	4 cut(s)	273, 471, 971, 983
HaeIII	GGCC	2 cut(s)	310, 540
HapII	CCGG	5 cut(s)	285, 314, 332, 565, 1075
Hin1II	CATG	1 cut(s)	580
HinfI	GANTC	9 cut(s)	193, 335, 750, 832, 886, 1069, 1078, 1179, 1250
HpaII	CCGG	5 cut(s)	285, 314, 332, 565, 1075
HphI	GGTGA	5 cut(s)	986, 1133, 1145, 1286, 1407
Hpy166II	GTNNAC	3 cut(s)	165, 467, 718
Hpy188I	TCNGA	4 cut(s)	703, 809, 1306, 1384
Hpy188III	TCNNGA	9 cut(s)	25, 92, 124, 314, 508, 673, 1075, 1097, 1254
Hpy8I	GTNNAC	3 cut(s)	165, 467, 718
HpyAV	CCTTC	4 cut(s)	820, 1020, 1120, 1322
HpyCH4III	ACNGT	6 cut(s)	412, 427, 464, 503, 733, 815
HpyCH4V	TGCA	5 cut(s)	98, 329, 495, 546, 606
HpyF3I	CTNAG	4 cut(s)	882, 1065, 1131, 1303
Hsp92II	CATG	1 cut(s)	580
Kpn2I	TCCGGA	2 cut(s)	313, 1074
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	9 cut(s)	126, 178, 280, 517, 911, 1093, 1135, 1259, 1379
LmnI	GCTCC	1 cut(s)	1391
LweI	GCATC	4 cut(s)	85, 107, 316, 678
MaeI	CTAG	4 cut(s)	273, 471, 971, 983
MaeIII	GTNAC	3 cut(s)	406, 443, 1223
MalI	GATC	9 cut(s)	128, 180, 282, 519, 913, 1095, 1137, 1261, 1381
MboI	GATC	9 cut(s)	126, 178, 280, 517, 911, 1093, 1135, 1259, 1379
MflI	RGATCY	4 cut(s)	280, 1093, 1259, 1379
MlsI	TGGCCA	1 cut(s)	540
MluCI	AATT	8 cut(s)	59, 213, 240, 437, 559, 802, 849, 1342
MluI	ACGCGT	1 cut(s)	1291
MluNI	TGGCCA	1 cut(s)	540
MlyI	GAGTC	1 cut(s)	744
MmeI	TCCRAC	1 cut(s)	724
Mox20I	TGGCCA	1 cut(s)	540
Mph1103I	ATGCAT	1 cut(s)	100
MroI	TCCGGA	2 cut(s)	313, 1074
MroXI	GAANNNNTTC	1 cut(s)	873
MscI	TGGCCA	1 cut(s)	540
MseI	TTAA	2 cut(s)	263, 414
MslI	CAYNNNNRTG	4 cut(s)	170, 551, 611, 654
Msp20I	TGGCCA	1 cut(s)	540
MspI	CCGG	5 cut(s)	285, 314, 332, 565, 1075
MspR9I	CCNGG	2 cut(s)	285, 286
MvnI	CGCG	1 cut(s)	1293
NciI	CCSGG	2 cut(s)	285, 286
NdeI	CATATG	3 cut(s)	491, 651, 863
NdeII	GATC	9 cut(s)	126, 178, 280, 517, 911, 1093, 1135, 1259, 1379
NlaIII	CATG	1 cut(s)	580
NmuCI	GTSAC	1 cut(s)	443
NsiI	ATGCAT	1 cut(s)	100
PceI	AGGCCT	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	873
PfeI	GAWTC	8 cut(s)	193, 335, 832, 886, 1069, 1078, 1179, 1250
PinAI	ACCGGT	1 cut(s)	564
PleI	GAGTC	1 cut(s)	744
PpsI	GAGTC	1 cut(s)	744
PspPI	GGNCC	2 cut(s)	89, 134
PstNI	CAGNNNCTG	1 cut(s)	1382
PsuI	RGATCY	4 cut(s)	280, 1093, 1259, 1379
RsaI	GTAC	4 cut(s)	164, 187, 781, 1351
RsaNI	GTAC	4 cut(s)	163, 186, 780, 1350
RseI	CAYNNNNRTG	4 cut(s)	170, 551, 611, 654
SaqAI	TTAA	2 cut(s)	263, 414
Sau3AI	GATC	9 cut(s)	126, 178, 280, 517, 911, 1093, 1135, 1259, 1379
Sau96I	GGNCC	2 cut(s)	89, 134
SchI	GAGTC	1 cut(s)	744
ScrFI	CCNGG	2 cut(s)	285, 286
SetI	ASST	9 cut(s)	472, 478, 682, 976, 992, 1055, 1066, 1363, 1400
SfaNI	GCATC	4 cut(s)	85, 107, 316, 678
SinI	GGWCC	2 cut(s)	89, 134
SmaI	CCCGGG	1 cut(s)	286
SmiMI	CAYNNNNRTG	4 cut(s)	170, 551, 611, 654
SmlI	CTYRAG	2 cut(s)	23, 1097
SmoI	CTYRAG	2 cut(s)	23, 1097
Sse9I	AATT	8 cut(s)	59, 213, 240, 437, 559, 802, 849, 1342
SseBI	AGGCCT	1 cut(s)	310
SsiI	CCGC	2 cut(s)	72, 366
SspI	AATATT	3 cut(s)	84, 759, 873
SspMI	CTAG	4 cut(s)	273, 471, 971, 983
StuI	AGGCCT	1 cut(s)	310
StyD4I	CCNGG	2 cut(s)	283, 284
StyI	CCWWGG	2 cut(s)	130, 530
TaaI	ACNGT	6 cut(s)	412, 427, 464, 503, 733, 815
TaqI	TCGA	3 cut(s)	350, 992, 1011
TasI	AATT	8 cut(s)	59, 213, 240, 437, 559, 802, 849, 1342
TatI	WGTACW	3 cut(s)	162, 779, 1349
TfiI	GAWTC	8 cut(s)	193, 335, 832, 886, 1069, 1078, 1179, 1250
Tru1I	TTAA	2 cut(s)	263, 414
Tru9I	TTAA	2 cut(s)	263, 414
TscAI	CASTG	2 cut(s)	530, 548
TseFI	GTSAC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	443
TspMI	CCCGGG	1 cut(s)	284
TspRI	CASTG	2 cut(s)	530, 548
VpaK11BI	GGWCC	2 cut(s)	89, 134
XapI	RAATTY	4 cut(s)	59, 437, 802, 849
XcmI	CCANNNNNNNNNTGG	1 cut(s)	354
XmaI	CCCGGG	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	873
XspI	CTAG	4 cut(s)	273, 471, 971, 983
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.