Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0010662

Physical Location & Seq

Genomic Coordinates Reverse (-)

37570855 .. 37582963

Gene Structure 12109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG344800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAGATTTAGCGCATTTTTTTTGCAGGATTTAACATTTTTATTCTTGACATCTGGTCGAGATCCTGGGATAATCCCTAGAAATTCAAATCCTCCTGAATCAGATGAAGCATTTAATGTAACCACCCCATCCATGGAGTGGGTTAACGGAAGAACTCCTCATCTGAAACTACCGCGAACAAAAGAGGTCAATATTAATGGTCACTCGGTAAAAGTGAAGTACTGTGATACTTGTTTTCTTTATCGGCCTCCCCGTGCATCTCATTGTTCTATCTGCAACAATTGTGTTCAGCGGTTTGATCATCATTGTCCATGGGTTGGTCAGTGCATTGGAATTCGTAACTATCGATTTTTCTTAATGTTCATATCAACATCAACCATACTGTGCATATATGTGTTCTCCTTCACTTGGGTGAACATAATTGAGACCAAGAATATCCGGACAGCTATGTCAAAAGATATTCTATCAGATTTTCTTTTAGCTTACTGCTTCATTGCTGTTTGGTTTGTGGGTGGCCTTACAATTTTCCATTCCTACTTGATATGCACCAACCAGACGACGTATGAGAACTTCCGGTATCGTTATGATCAGAAGGAGAACCCATATAACAAAGGAGTGATTTGGAACTTCAAAGAAATTTTTTTCTCCAGCATCCCTCCTTCAGTGATTAGATTCCGATCATTTATTGACACAGATGAACAGGTGATTGTAGAATCCGTAGCACCAAATCTTGGAGAAGGTATTATGAGCTCAAAAGAGAAAATTGATATTGAAATGGGAACTGGGATAGTGGATGACAATGGCTTTGCAATTCCGGATATATTGCGAAATCTTGAATTTGTTGATTATGAGGAGGATTTGAAGAATCAAGGGGAAGAGCAAGAACCTGCTTCGTTTGACTCTTTTCAACCAGAAGGAAAAGAATCATTGAAATACTCGATAAATATAGATGAAAGTATAGAATCTGTGCATAGCTATACTATAAGGAATGAACTTAGAGAATCTATCCAGAGTACTATTTCCTTGGGGGGAGCAATTGAGAAAGGTGATTGTGAAAATAATTCTCATGAAACCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005886 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030154 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035618 GO:0040007 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0099402 GO:0120025 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04391 map04391

Pfam Domains

Protein Families

DHHC

Protein Analysis

359

Amino Acids

41.31

Weight (kDa)

5.08

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	72 - 192	2.9e-36	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56930 AT3G56930
fragaria_vesca	FvH4_1g28800 FvH4_1g28800 FvH4_1g28800
malus_domestica	MD00G1107600.v1.1 MD14G1100600.v1.1
prunus_persica	Prupe.7G022600_v2.0.a1
pyrus_communis	pycom12g09230 pycom14g08900
rosa_chinensis	RchiOBHm_Chr3g0493221
rosa_laevigata	RLG00000022721
rosa_multiflora	Rmu_sc0003406.1_g000006
rosa_roxburghii	Rroxscaffold_6G00391740
rosa_rugosa	Rorug03G0259900
rosa_samantha	Rh3AG308800 Rh3BG344800 Rh3CG342000 Rh3DG344100
rosa_wichuraiana	Rw3G027150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1078
AasI	GACNNNNNNGTC	1 cut(s)	448
Acc36I	ACCTGC	1 cut(s)	895
AccB7I	CCANNNNNTGG	3 cut(s)	138, 317, 731
AccII	CGCG	1 cut(s)	175
AccIII	TCCGGA	2 cut(s)	438, 814
AciI	CCGC	2 cut(s)	173, 292
AclWI	GGATC	1 cut(s)	56
AcsI	RAATTY	4 cut(s)	82, 333, 636, 836
AcuI	CTGAAG	1 cut(s)	645
AfaI	GTAC	2 cut(s)	221, 1015
AfiI	CCNNNNNNNGG	5 cut(s)	133, 138, 317, 408, 731
AgsI	TTSAA	7 cut(s)	87, 631, 773, 836, 862, 908, 931
AhdI	GACNNNNNGTC	1 cut(s)	54
AjnI	CCWGG	1 cut(s)	64
AleI	CACNNNNGTG	1 cut(s)	410
AluBI	AGCT	4 cut(s)	446, 482, 750, 975
AluI	AGCT	4 cut(s)	446, 482, 750, 975
Alw21I	GWGCWC	1 cut(s)	752
Alw26I	GTCTC	1 cut(s)	419
AlwI	GGATC	1 cut(s)	56
Aor13HI	TCCGGA	2 cut(s)	438, 814
AoxI	GGCC	2 cut(s)	245, 514
ApoI	RAATTY	4 cut(s)	82, 333, 636, 836
ArsI	GACNNNNNNTTYG	2 cut(s)	788, 820
AseI	ATTAAT	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	14
AsuHPI	GGTGA	3 cut(s)	424, 715, 1058
BanII	GRGCYC	1 cut(s)	752
BarI	GAAGNNNNNNTAC	2 cut(s)	554, 586
Bbv12I	GWGCWC	1 cut(s)	752
BccI	CCATC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	66
BclI	TGATCA	2 cut(s)	298, 586
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	895
BmcAI	AGTACT	2 cut(s)	221, 1015
Bme1390I	CCNGG	1 cut(s)	66
BmeRI	GACNNNNNGTC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	66
BmrI	ACTGGG	1 cut(s)	792
BmsI	GCATC	2 cut(s)	266, 660
BmuI	ACTGGG	1 cut(s)	792
BpmI	CTGGAG	1 cut(s)	631
Bsa29I	ATCGAT	1 cut(s)	346
BsaBI	GATNNNNATC	1 cut(s)	676
BsaI	GGTCTC	1 cut(s)	419
BsaJI	CCNNGG	4 cut(s)	65, 132, 311, 1023
BsaWI	WCCGGW	3 cut(s)	438, 573, 814
Bsc4I	CCNNNNNNNGG	5 cut(s)	133, 138, 317, 408, 731
Bse1I	ACTGG	1 cut(s)	787
Bse3DI	GCAATG	1 cut(s)	492
Bse8I	GATNNNNATC	1 cut(s)	676
BseAI	TCCGGA	2 cut(s)	438, 814
BseBI	CCWGG	1 cut(s)	66
BseCI	ATCGAT	1 cut(s)	346
BseDI	CCNNGG	4 cut(s)	65, 132, 311, 1023
BseGI	GGATG	3 cut(s)	128, 651, 799
BseJI	GATNNNNATC	1 cut(s)	676
BseLI	CCNNNNNNNGG	5 cut(s)	133, 138, 317, 408, 731
BseMI	GCAATG	1 cut(s)	492
BseNI	ACTGG	1 cut(s)	787
BseRI	GAGGAG	2 cut(s)	147, 866
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	2 cut(s)	247, 516
BshVI	ATCGAT	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	752
BsiSI	CCGG	3 cut(s)	439, 574, 815
BslI	CCNNNNNNNGG	5 cut(s)	133, 138, 317, 408, 731
BsmAI	GTCTC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	247, 516
Bso31I	GGTCTC	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	752
Bsp13I	TCCGGA	2 cut(s)	438, 814
Bsp143I	GATC	4 cut(s)	61, 298, 586, 677
Bsp19I	CCATGG	2 cut(s)	132, 311
BspACI	CCGC	2 cut(s)	173, 292
BspANI	GGCC	2 cut(s)	247, 516
BspDI	ATCGAT	1 cut(s)	346
BspEI	TCCGGA	2 cut(s)	438, 814
BspFNI	CGCG	1 cut(s)	175
BspHI	TCATGA	1 cut(s)	1066
BspMI	ACCTGC	1 cut(s)	895
BspPI	GGATC	1 cut(s)	56
BspQI	GCTCTTC	1 cut(s)	870
BspTNI	GGTCTC	1 cut(s)	419
BsrDI	GCAATG	1 cut(s)	492
BsrI	ACTGG	1 cut(s)	787
BssECI	CCNNGG	4 cut(s)	65, 132, 311, 1023
BssMI	GATC	4 cut(s)	61, 298, 586, 677
BssT1I	CCWWGG	3 cut(s)	132, 311, 1023
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	2 cut(s)	224, 384
Bst6I	CTCTTC	1 cut(s)	870
BstDEI	CTNAG	1 cut(s)	995
BstDSI	CCRYGG	2 cut(s)	132, 311
BstF5I	GGATG	3 cut(s)	128, 651, 799
BstFNI	CGCG	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	4 cut(s)	64, 301, 589, 680
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	4 cut(s)	61, 298, 586, 677
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstUI	CGCG	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
Bsu15I	ATCGAT	1 cut(s)	346
BsuRI	GGCC	2 cut(s)	247, 516
BsuTUI	ATCGAT	1 cut(s)	346
BtgI	CCRYGG	2 cut(s)	132, 311
BtsCI	GGATG	3 cut(s)	128, 651, 799
BtsIMutI	CAGTG	2 cut(s)	329, 669
BveI	ACCTGC	1 cut(s)	895
CciI	TCATGA	1 cut(s)	1066
CfoI	GCGC	1 cut(s)	14
ClaI	ATCGAT	1 cut(s)	346
Csp6I	GTAC	2 cut(s)	220, 1014
CviAII	CATG	3 cut(s)	133, 312, 1067
CviJI	RGCY	7 cut(s)	247, 446, 482, 516, 750, 804, 975
CviKI_1	RGCY	7 cut(s)	247, 446, 482, 516, 750, 804, 975
CviQI	GTAC	2 cut(s)	220, 1014
DdeI	CTNAG	1 cut(s)	995
DpnI	GATC	4 cut(s)	63, 300, 588, 679
DpnII	GATC	4 cut(s)	61, 298, 586, 677
DrdI	GACNNNNNNGTC	1 cut(s)	448
DriI	GACNNNNNGTC	1 cut(s)	54
DseDI	GACNNNNNNGTC	1 cut(s)	448
Eam1104I	CTCTTC	1 cut(s)	870
Eam1105I	GACNNNNNGTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	870
Ecl136II	GAGCTC	1 cut(s)	750
Eco130I	CCWWGG	3 cut(s)	132, 311, 1023
Eco24I	GRGCYC	1 cut(s)	752
Eco31I	GGTCTC	1 cut(s)	419
Eco53kI	GAGCTC	1 cut(s)	750
Eco57I	CTGAAG	1 cut(s)	645
EcoICRI	GAGCTC	1 cut(s)	750
EcoRI	GAATTC	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	3 cut(s)	132, 311, 1023
EcoT38I	GRGCYC	1 cut(s)	752
ErhI	CCWWGG	3 cut(s)	132, 311, 1023
FaeI	CATG	3 cut(s)	136, 315, 1070
FatI	CATG	3 cut(s)	132, 311, 1066
FbaI	TGATCA	2 cut(s)	298, 586
FokI	GGATG	3 cut(s)	115, 638, 806
FriOI	GRGCYC	1 cut(s)	752
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	13
GsuI	CTGGAG	1 cut(s)	631
HaeIII	GGCC	2 cut(s)	247, 516
HapII	CCGG	3 cut(s)	439, 574, 815
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	3 cut(s)	136, 315, 1070
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	8 cut(s)	98, 672, 713, 865, 899, 923, 962, 1001
HpaI	GTTAAC	1 cut(s)	145
HpaII	CCGG	3 cut(s)	439, 574, 815
HphI	GGTGA	3 cut(s)	424, 715, 1058
Hpy166II	GTNNAC	2 cut(s)	145, 415
Hpy188I	TCNGA	5 cut(s)	103, 165, 469, 591, 677
Hpy188III	TCNNGA	8 cut(s)	46, 59, 95, 439, 815, 833, 1009, 1067
Hpy8I	GTNNAC	2 cut(s)	145, 415
Hpy99I	CGWCG	1 cut(s)	562
HpyAV	CCTTC	5 cut(s)	412, 586, 669, 731, 908
HpyCH4III	ACNGT	2 cut(s)	224, 384
HpyCH4IV	ACGT	1 cut(s)	560
HpyCH4V	TGCA	8 cut(s)	25, 257, 276, 327, 387, 546, 809, 970
HpyF3I	CTNAG	1 cut(s)	995
HpySE526I	ACGT	1 cut(s)	560
Hsp92II	CATG	3 cut(s)	136, 315, 1070
HspAI	GCGC	1 cut(s)	12
Kpn2I	TCCGGA	2 cut(s)	438, 814
Ksp22I	TGATCA	2 cut(s)	298, 586
KspAI	GTTAAC	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	61, 298, 586, 677
LguI	GCTCTTC	1 cut(s)	870
LmnI	GCTCC	1 cut(s)	1031
LweI	GCATC	2 cut(s)	266, 660
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	560
MaeIII	GTNAC	3 cut(s)	118, 200, 338
MalI	GATC	4 cut(s)	63, 300, 588, 679
MboI	GATC	4 cut(s)	61, 298, 586, 677
MboII	GAAGA	3 cut(s)	162, 874, 887
MfeI	CAATTG	2 cut(s)	280, 1035
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	752
MlyI	GAGTC	1 cut(s)	893
MnlI	CCTC	7 cut(s)	102, 168, 178, 258, 666, 844, 847
MroI	TCCGGA	2 cut(s)	438, 814
MseI	TTAA	5 cut(s)	32, 114, 144, 195, 356
MslI	CAYNNNNRTG	2 cut(s)	392, 410
MspA1I	CMGCKG	1 cut(s)	292
MspI	CCGG	3 cut(s)	439, 574, 815
MspR9I	CCNGG	1 cut(s)	66
MunI	CAATTG	2 cut(s)	280, 1035
MvaI	CCWGG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	175
NcoI	CCATGG	2 cut(s)	132, 311
NdeII	GATC	4 cut(s)	61, 298, 586, 677
NlaIII	CATG	3 cut(s)	136, 315, 1070
NmuCI	GTSAC	1 cut(s)	200
OliI	CACNNNNGTG	1 cut(s)	410
PagI	TCATGA	1 cut(s)	1066
PciSI	GCTCTTC	1 cut(s)	870
PcsI	WCGNNNNNNNCGW	2 cut(s)	250, 343
PfeI	GAWTC	7 cut(s)	98, 672, 713, 865, 923, 962, 1001
PflMI	CCANNNNNTGG	3 cut(s)	138, 317, 731
PleI	GAGTC	1 cut(s)	893
PpsI	GAGTC	1 cut(s)	893
PshBI	ATTAAT	1 cut(s)	195
PsiI	TTATAA	1 cut(s)	1078
Psp124BI	GAGCTC	1 cut(s)	752
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	2 cut(s)	221, 1015
RsaNI	GTAC	2 cut(s)	220, 1014
RseI	CAYNNNNRTG	2 cut(s)	392, 410
SacI	GAGCTC	1 cut(s)	752
SapI	GCTCTTC	1 cut(s)	870
SaqAI	TTAA	5 cut(s)	32, 114, 144, 195, 356
Sau3AI	GATC	4 cut(s)	61, 298, 586, 677
ScaI	AGTACT	2 cut(s)	221, 1015
SchI	GAGTC	1 cut(s)	893
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	752
SfaNI	GCATC	2 cut(s)	266, 660
SmiMI	CAYNNNNRTG	2 cut(s)	392, 410
SsiI	CCGC	2 cut(s)	173, 292
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	1 cut(s)	78
SstI	GAGCTC	1 cut(s)	752
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	3 cut(s)	132, 311, 1023
TaaI	ACNGT	2 cut(s)	224, 384
TaiI	ACGT	1 cut(s)	563
TaqI	TCGA	3 cut(s)	58, 346, 938
TatI	WGTACW	2 cut(s)	219, 1013
TfiI	GAWTC	7 cut(s)	98, 672, 713, 865, 923, 962, 1001
Tru1I	TTAA	5 cut(s)	32, 114, 144, 195, 356
Tru9I	TTAA	5 cut(s)	32, 114, 144, 195, 356
TscAI	CASTG	2 cut(s)	329, 669
TseFI	GTSAC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	6 cut(s)	120, 352, 481, 711, 966, 1005
TspGWI	ACGGA	2 cut(s)	162, 706
TspRI	CASTG	2 cut(s)	329, 669
Van91I	CCANNNNNTGG	3 cut(s)	138, 317, 731
VspI	ATTAAT	1 cut(s)	195
XapI	RAATTY	4 cut(s)	82, 333, 636, 836
XcmI	CCANNNNNNNNNTGG	2 cut(s)	130, 135
XspI	CTAG	1 cut(s)	78
ZrmI	AGTACT	2 cut(s)	221, 1015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.