Rroxscaffold_6G00391740

Belongs to the DHHC palmitoyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
10445617 .. 10446921
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00391740.1

Sequence Viewer

Length: 378 bp
ATGACCACGTATGAGAACTTCCGGTATAGTTATGATAAGAAGGAGAACCCATATAACAAAGGAGTGATTTGGAACTTCAAAGAAATTTTTTTCTCCAGCATCCCTCCTTCAGTGATTAGATTCCGATCATTCATTGACACAGATGAACAGGTGATTGTAGAATCCGTAGCTCCAAATCTTGGAGAAGGTATTATGAGCTCAAAAGAGAAAATTGATATTGAAATGGGAACTGGGATAGTGGATGACAATGGCTTTGCAATTCCGGATATATTGCGAAATCTTGAATTTGTTGATTATGAGGAGGATTTGAAGAATCAAGGGAAGAGCAAGAACCTGCTTCGTTTGACTCTTTTCAGCCAGAAGGAAAAGAATCATTGA

Protein Analysis

125

Amino Acids

14.54

Weight (kDa)

4.93

Isoelectric Point (pI)

27.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010662)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 342
AccB7I CCANNNNNTGG 1 cut(s) 179
AccIII TCCGGA 1 cut(s) 262
AcsI RAATTY 2 cut(s) 84, 284
AcuI CTGAAG 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 4 cut(s) 79, 221, 284, 310
AluBI AGCT 2 cut(s) 170, 198
AluI AGCT 2 cut(s) 170, 198
Alw21I GWGCWC 1 cut(s) 200
Aor13HI TCCGGA 1 cut(s) 262
ApoI RAATTY 2 cut(s) 84, 284
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AsuHPI GGTGA 1 cut(s) 163
BanII GRGCYC 1 cut(s) 200
BarI GAAGNNNNNNTAC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 342
BmrI ACTGGG 1 cut(s) 240
BmsI GCATC 1 cut(s) 108
BmuI ACTGGG 1 cut(s) 240
BpmI CTGGAG 1 cut(s) 79
BsaAI YACGTR 1 cut(s) 9
BsaBI GATNNNNATC 1 cut(s) 124
BsaWI WCCGGW 2 cut(s) 21, 262
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse1I ACTGG 1 cut(s) 235
Bse8I GATNNNNATC 1 cut(s) 124
BseAI TCCGGA 1 cut(s) 262
BseGI GGATG 2 cut(s) 99, 247
BseJI GATNNNNATC 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 179
BseNI ACTGG 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 200
BsiSI CCGG 2 cut(s) 22, 263
BslI CCNNNNNNNGG 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 200
Bsp13I TCCGGA 1 cut(s) 262
Bsp143I GATC 1 cut(s) 125
BspEI TCCGGA 1 cut(s) 262
BspMI ACCTGC 1 cut(s) 342
BspQI GCTCTTC 1 cut(s) 317
BsrI ACTGG 1 cut(s) 235
BssMI GATC 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 317
BstBAI YACGTR 1 cut(s) 9
BstF5I GGATG 2 cut(s) 99, 247
BstKTI GATC 1 cut(s) 128
BstMBI GATC 1 cut(s) 125
BtsCI GGATG 2 cut(s) 99, 247
BtsIMutI CAGTG 1 cut(s) 117
BveI ACCTGC 1 cut(s) 342
CviJI RGCY 4 cut(s) 170, 198, 252, 357
CviKI_1 RGCY 4 cut(s) 170, 198, 252, 357
DpnI GATC 1 cut(s) 127
DpnII GATC 1 cut(s) 125
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Ecl136II GAGCTC 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 200
FaiI YATR 8 cut(s) 12, 27, 33, 52, 54, 194, 269, 297
FokI GGATG 2 cut(s) 86, 254
FriOI GRGCYC 1 cut(s) 200
GsuI CTGGAG 1 cut(s) 79
HapII CCGG 2 cut(s) 22, 263
HinfI GANTC 5 cut(s) 120, 161, 313, 346, 370
HpaII CCGG 2 cut(s) 22, 263
HphI GGTGA 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 125
Hpy188III TCNNGA 2 cut(s) 263, 281
HpyAV CCTTC 4 cut(s) 34, 117, 179, 355
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 257
HpySE526I ACGT 1 cut(s) 8
Kpn2I TCCGGA 1 cut(s) 262
Kzo9I GATC 1 cut(s) 125
LguI GCTCTTC 1 cut(s) 317
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 7 cut(s) 35, 109, 134, 216, 276, 347, 371
LweI GCATC 1 cut(s) 108
MaeII ACGT 1 cut(s) 8
MalI GATC 1 cut(s) 127
MboI GATC 1 cut(s) 125
MboII GAAGA 2 cut(s) 322, 334
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 4 cut(s) 84, 210, 258, 284
MlyI GAGTC 1 cut(s) 340
MnlI CCTC 3 cut(s) 114, 292, 295
MroI TCCGGA 1 cut(s) 262
MspI CCGG 2 cut(s) 22, 263
NdeII GATC 1 cut(s) 125
PciSI GCTCTTC 1 cut(s) 317
PfeI GAWTC 4 cut(s) 120, 161, 313, 370
PflMI CCANNNNNTGG 1 cut(s) 179
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
Ppu21I YACGTR 1 cut(s) 9
Psp124BI GAGCTC 1 cut(s) 200
SacI GAGCTC 1 cut(s) 200
SapI GCTCTTC 1 cut(s) 317
Sau3AI GATC 1 cut(s) 125
SchI GAGTC 1 cut(s) 340
SduI GDGCHC 1 cut(s) 200
SetI ASST 6 cut(s) 11, 153, 172, 190, 200, 336
SfaNI GCATC 1 cut(s) 108
Sse9I AATT 4 cut(s) 84, 210, 258, 284
SstI GAGCTC 1 cut(s) 200
TaiI ACGT 1 cut(s) 11
TasI AATT 4 cut(s) 84, 210, 258, 284
TfiI GAWTC 4 cut(s) 120, 161, 313, 370
TscAI CASTG 1 cut(s) 117
TspDTI ATGAA 2 cut(s) 121, 159
TspGWI ACGGA 1 cut(s) 154
TspRI CASTG 1 cut(s) 117
Van91I CCANNNNNTGG 1 cut(s) 179
XapI RAATTY 2 cut(s) 84, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.