Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010662

Physical Location & Seq

Genomic Coordinates Forward (+)

15502043 .. 15508709

Gene Structure 6667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1100600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGCACAGAATAAAACCAAGAGGCTCTACCAAGTTTGGAAAGGAAGCAATAACTTTTTCTGTGGCGGGAGATTAATTTTTGGTCCTGATGTGGCATCTCTTCTTCTGTCTACACTCCTTATTGCCGGCCCAGCAGTTGCATTCTGTTTGAAGGTTTATCTTAAAATCAAAGATGAGAAGAACAAGAATGAGAATCTATGGCTTCCTGTATTAGTTATTGGCTCAGTCCTTACAATATTGGATTTAACCTTTCTCTTCTTGACTTCTGGTAGAGATCCTGGAATAATCCCTCGAAATTCAAGGCCTCCAGAATCAGATGAAGTATTTGATCTAGCTACCCCATCCATGGAGTGGGTTAATGAAAGAACTCCTCATTTGAAGCTACCTCGAACAAGAGATGTGATTGTAAATGGTCACACAGTAAAAGTGAAGTATTGCGATACTTGTTTGCTTTATCGTCCTCCCCGTGTATCTCACTGTTCTATCTGCAACAATTGCGTTCAGAGATTCGATCATCACTGTCCATGGGTTGGTCAGTGCATTGGAATTCGTAACTATCCATTCTTCTTCATGTTCATATCAACCTCAACCATACTGTGCATATATGTTTTTGTCTTCTCTTGGATAAACATAGTTCAACATGGCAGTCTTCCAAAAGCTTTTTCCAAAGATATCGTTTCAGATATCCTTTTAGGGTACTGTTTTATCGCTATCTGGTTTGTTGGTGGCCTTACAATCTTCCATTCCTACTTGATATGCACAAACCAGACAACATATGAAAACTTCCGGTACCGATATGATAAGAAGGAGAACCCGTATGATAAAGGAATGATTTGGAATGTCAATGAAGTTTTTTTCACCAAAATCCCTCCTTCAATGAATAGATTCCGATCATTCATTGAGATGGATGAACAGATGATTGCAGGATCTGGGACTCCAACTCACAGGGAAGGTACTATGAGCTCAAAGGAGAAAATAGATATTGAAATGGGAACTAGGCATGCGGAGGACAATGGTTTATCACTTCCAAACATTTTGCGGAATTTTGACTATGATGATTTGGAGGATGATTTGAAGGATGCAGGGGAACAACGCGGGCCTGCTTTTGACCCCCTTTTTCCCAATCAGCGAGAAGTAAAAGAATCTGTGCAATACTCGGCAGATGGAGATAAAATTACAGAAAGTGTTGCTACAAGGGATGCAGTGAAATATTCTGTGCGAAGCACACCTCTGGAAGATGAATTGCGAGCATCAGTCCATAGCACCACTTACTTTGATGGAGCAAATGAGGAAACTGATTGCGGAAATAAAAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005886 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030154 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035618 GO:0040007 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0099402 GO:0120025 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04391 map04391

Pfam Domains

Protein Families

DHHC

Protein Analysis

440

Amino Acids

50.12

Weight (kDa)

6.23

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	143 - 263	1e-34	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56930 AT3G56930
fragaria_vesca	FvH4_1g28800 FvH4_1g28800 FvH4_1g28800
malus_domestica	MD00G1107600.v1.1 MD14G1100600.v1.1
prunus_persica	Prupe.7G022600_v2.0.a1
pyrus_communis	pycom12g09230 pycom14g08900
rosa_chinensis	RchiOBHm_Chr3g0493221
rosa_laevigata	RLG00000022721
rosa_multiflora	Rmu_sc0003406.1_g000006
rosa_roxburghii	Rroxscaffold_6G00391740
rosa_rugosa	Rorug03G0259900
rosa_samantha	Rh3AG308800 Rh3BG344800 Rh3CG342000 Rh3DG344100
rosa_wichuraiana	Rw3G027150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	789
AccB1I	GGYRCC	1 cut(s)	789
AccB7I	CCANNNNNTGG	2 cut(s)	351, 530
AccI	GTMKAC	1 cut(s)	110
AccII	CGCG	1 cut(s)	1095
AciI	CCGC	5 cut(s)	66, 1004, 1039, 1095, 1302
AclWI	GGATC	2 cut(s)	269, 934
AcsI	RAATTY	3 cut(s)	295, 546, 1042
AfaI	GTAC	3 cut(s)	698, 791, 955
AfiI	CCNNNNNNNGG	3 cut(s)	346, 351, 530
AgsI	TTSAA	7 cut(s)	151, 300, 379, 638, 876, 986, 1075
AjnI	CCWGG	1 cut(s)	277
AjuI	GAANNNNNNNTTGG	2 cut(s)	646, 678
AluBI	AGCT	4 cut(s)	335, 382, 659, 963
AluI	AGCT	4 cut(s)	335, 382, 659, 963
Alw21I	GWGCWC	1 cut(s)	965
AlwI	GGATC	2 cut(s)	269, 934
AlwNI	CAGNNNCTG	1 cut(s)	929
AoxI	GGCC	4 cut(s)	127, 302, 727, 1097
ApoI	RAATTY	3 cut(s)	295, 546, 1042
AseI	ATTAAT	1 cut(s)	74
Asp700I	GAANNNNTTC	1 cut(s)	884
Asp718I	GGTACC	1 cut(s)	789
AspS9I	GGNCC	3 cut(s)	83, 128, 1097
AsuHPI	GGTGA	1 cut(s)	850
AvaII	GGWCC	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	789
BanII	GRGCYC	1 cut(s)	965
BbsI	GAAGAC	2 cut(s)	607, 641
Bbv12I	GWGCWC	1 cut(s)	965
BccI	CCATC	4 cut(s)	349, 898, 1157, 1271
BciT130I	CCWGG	1 cut(s)	279
BfaI	CTAG	2 cut(s)	332, 996
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	3 cut(s)	83, 128, 1097
BmiI	GGNNCC	1 cut(s)	791
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	4 cut(s)	104, 1069, 1189, 1259
BpiI	GAAGAC	2 cut(s)	607, 641
BpmI	CTGGAG	1 cut(s)	291
BsaBI	GATNNNNATC	1 cut(s)	889
BsaJI	CCNNGG	2 cut(s)	345, 524
BsaWI	WCCGGW	1 cut(s)	786
BsaXI	ACNNNNNCTCC	2 cut(s)	800, 830
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 351, 530
Bse118I	RCCGGY	1 cut(s)	125
Bse8I	GATNNNNATC	1 cut(s)	889
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	345, 524
BseGI	GGATG	5 cut(s)	341, 913, 1072, 1084, 1204
BseJI	GATNNNNATC	1 cut(s)	889
BseLI	CCNNNNNNNGG	3 cut(s)	346, 351, 530
BseMII	CTCAG	1 cut(s)	237
BseRI	GAGGAG	1 cut(s)	360
BseYI	CCCAGC	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	1095
BshFI	GGCC	4 cut(s)	129, 304, 729, 1099
BshNI	GGYRCC	1 cut(s)	789
BsiHKAI	GWGCWC	1 cut(s)	965
BsiSI	CCGG	2 cut(s)	126, 787
BslFI	GGGAC	1 cut(s)	946
BslI	CCNNNNNNNGG	3 cut(s)	346, 351, 530
BsmFI	GGGAC	1 cut(s)	946
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	4 cut(s)	129, 304, 729, 1099
Bsp1286I	GDGCHC	1 cut(s)	965
Bsp143I	GATC	5 cut(s)	274, 328, 511, 890, 926
Bsp19I	CCATGG	2 cut(s)	345, 524
BspACI	CCGC	5 cut(s)	66, 1004, 1039, 1095, 1302
BspANI	GGCC	4 cut(s)	129, 304, 729, 1099
BspCNI	CTCAG	1 cut(s)	236
BspFNI	CGCG	1 cut(s)	1095
BspLI	GGNNCC	1 cut(s)	791
BspPI	GGATC	2 cut(s)	269, 934
BspT107I	GGYRCC	1 cut(s)	789
BsrFI	RCCGGY	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	345, 524
BssMI	GATC	5 cut(s)	274, 328, 511, 890, 926
BssT1I	CCWWGG	2 cut(s)	345, 524
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	5 cut(s)	421, 479, 521, 597, 701
Bst6I	CTCTTC	2 cut(s)	105, 260
BstAPI	GCANNNNNTGC	1 cut(s)	495
BstC8I	GCNNGC	5 cut(s)	127, 1002, 1097, 1101, 1248
BstDEI	CTNAG	1 cut(s)	223
BstDSI	CCRYGG	2 cut(s)	345, 524
BstF5I	GGATG	5 cut(s)	341, 913, 1072, 1084, 1204
BstFNI	CGCG	1 cut(s)	1095
BstKTI	GATC	5 cut(s)	277, 331, 514, 893, 929
BstMBI	GATC	5 cut(s)	274, 328, 511, 890, 926
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 495
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	1004
BstSCI	CCNGG	1 cut(s)	277
BstUI	CGCG	1 cut(s)	1095
BstV2I	GAAGAC	2 cut(s)	607, 641
BstX2I	RGATCY	2 cut(s)	274, 926
BstYI	RGATCY	2 cut(s)	274, 926
BsuRI	GGCC	4 cut(s)	129, 304, 729, 1099
BtgI	CCRYGG	2 cut(s)	345, 524
BtsCI	GGATG	5 cut(s)	341, 913, 1072, 1084, 1204
BtsI	GCAGTG	1 cut(s)	1209
BtsIMutI	CAGTG	4 cut(s)	475, 517, 542, 1209
Cac8I	GCNNGC	5 cut(s)	127, 1002, 1097, 1101, 1248
CaiI	CAGNNNCTG	1 cut(s)	929
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	3 cut(s)	83, 128, 1097
Csp6I	GTAC	3 cut(s)	697, 790, 954
CspCI	CAANNNNNGTGG	2 cut(s)	1255, 1290
CviAII	CATG	5 cut(s)	346, 525, 571, 641, 1001
CviQI	GTAC	3 cut(s)	697, 790, 954
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	5 cut(s)	276, 330, 513, 892, 928
DpnII	GATC	5 cut(s)	274, 328, 511, 890, 926
Eam1104I	CTCTTC	2 cut(s)	105, 260
EarI	CTCTTC	2 cut(s)	105, 260
Ecl136II	GAGCTC	1 cut(s)	963
Eco130I	CCWWGG	2 cut(s)	345, 524
Eco147I	AGGCCT	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	965
Eco32I	GATATC	2 cut(s)	673, 685
Eco47I	GGWCC	1 cut(s)	83
Eco53kI	GAGCTC	1 cut(s)	963
EcoICRI	GAGCTC	1 cut(s)	963
EcoRI	GAATTC	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	277
EcoRV	GATATC	2 cut(s)	673, 685
EcoT14I	CCWWGG	2 cut(s)	345, 524
EcoT38I	GRGCYC	1 cut(s)	965
ErhI	CCWWGG	2 cut(s)	345, 524
FaeI	CATG	5 cut(s)	349, 528, 574, 644, 1004
FaqI	GGGAC	1 cut(s)	946
FatI	CATG	5 cut(s)	345, 524, 570, 640, 1000
FauI	CCCGC	2 cut(s)	59, 1088
FauNDI	CATATG	1 cut(s)	775
FblI	GTMKAC	1 cut(s)	110
FokI	GGATG	5 cut(s)	328, 920, 1079, 1091, 1211
FriOI	GRGCYC	1 cut(s)	965
FspBI	CTAG	2 cut(s)	332, 996
GsaI	CCCAGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	4 cut(s)	129, 304, 729, 1099
HapII	CCGG	2 cut(s)	126, 787
Hin1II	CATG	5 cut(s)	349, 528, 574, 644, 1004
HindIII	AAGCTT	1 cut(s)	657
HinfI	GANTC	6 cut(s)	193, 311, 507, 885, 934, 1142
HpaII	CCGG	2 cut(s)	126, 787
HphI	GGTGA	1 cut(s)	850
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	4 cut(s)	316, 504, 682, 890
Hpy188III	TCNNGA	4 cut(s)	86, 259, 308, 1232
Hpy8I	GTNNAC	1 cut(s)	111
HpyAV	CCTTC	5 cut(s)	145, 799, 882, 944, 1069
HpyCH4III	ACNGT	5 cut(s)	421, 479, 521, 597, 701
HpyCH4V	TGCA	9 cut(s)	140, 489, 540, 600, 759, 923, 1082, 1150, 1202
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 495
HpyF3I	CTNAG	1 cut(s)	223
Hsp92II	CATG	5 cut(s)	349, 528, 574, 644, 1004
KpnI	GGTACC	1 cut(s)	793
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Kzo9I	GATC	5 cut(s)	274, 328, 511, 890, 926
LmnI	GCTCC	1 cut(s)	1280
LweI	GCATC	4 cut(s)	104, 1069, 1189, 1259
MaeI	CTAG	2 cut(s)	332, 996
MaeIII	GTNAC	2 cut(s)	413, 551
MalI	GATC	5 cut(s)	276, 330, 513, 892, 928
MboI	GATC	5 cut(s)	274, 328, 511, 890, 926
MfeI	CAATTG	1 cut(s)	493
MflI	RGATCY	2 cut(s)	274, 926
MhlI	GDGCHC	1 cut(s)	965
MluCI	AATT	7 cut(s)	75, 295, 493, 546, 1042, 1173, 1241
MlyI	GAGTC	1 cut(s)	928
MmeI	TCCRAC	1 cut(s)	962
MroNI	GCCGGC	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	884
MseI	TTAA	4 cut(s)	74, 162, 245, 357
MslI	CAYNNNNRTG	1 cut(s)	902
MspI	CCGG	2 cut(s)	126, 787
MspR9I	CCNGG	1 cut(s)	279
MunI	CAATTG	1 cut(s)	493
Mva1269I	GAATGC	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	279
MvnI	CGCG	1 cut(s)	1095
MwoI	GCNNNNNNNGC	2 cut(s)	131, 495
NaeI	GCCGGC	1 cut(s)	127
NcoI	CCATGG	2 cut(s)	345, 524
NdeI	CATATG	1 cut(s)	775
NdeII	GATC	5 cut(s)	274, 328, 511, 890, 926
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	5 cut(s)	349, 528, 574, 644, 1004
NlaIV	GGNNCC	1 cut(s)	791
NmeAIII	GCCGAG	1 cut(s)	1136
NmuCI	GTSAC	1 cut(s)	413
NspI	RCATGY	1 cut(s)	1004
PaeI	GCATGC	1 cut(s)	1004
PceI	AGGCCT	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	463
PctI	GAATGC	1 cut(s)	140
PdiI	GCCGGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	884
PfeI	GAWTC	5 cut(s)	193, 311, 507, 885, 1142
PflMI	CCANNNNNTGG	2 cut(s)	351, 530
PfoI	TCCNGGA	1 cut(s)	277
PleI	GAGTC	1 cut(s)	928
PpsI	GAGTC	1 cut(s)	928
PshBI	ATTAAT	1 cut(s)	74
Psp124BI	GAGCTC	1 cut(s)	965
Psp6I	CCWGG	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	791
PspPI	GGNCC	3 cut(s)	83, 128, 1097
PstNI	CAGNNNCTG	1 cut(s)	929
PsuI	RGATCY	2 cut(s)	274, 926
RsaI	GTAC	3 cut(s)	698, 791, 955
RsaNI	GTAC	3 cut(s)	697, 790, 954
RseI	CAYNNNNRTG	1 cut(s)	902
SacI	GAGCTC	1 cut(s)	965
SaqAI	TTAA	4 cut(s)	74, 162, 245, 357
Sau3AI	GATC	5 cut(s)	274, 328, 511, 890, 926
Sau96I	GGNCC	3 cut(s)	83, 128, 1097
SchI	GAGTC	1 cut(s)	928
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	965
SfaNI	GCATC	4 cut(s)	104, 1069, 1189, 1259
SinI	GGWCC	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	902
SphI	GCATGC	1 cut(s)	1004
Sse9I	AATT	7 cut(s)	75, 295, 493, 546, 1042, 1173, 1241
SseBI	AGGCCT	1 cut(s)	304
SsiI	CCGC	5 cut(s)	66, 1004, 1039, 1095, 1302
SspI	AATATT	2 cut(s)	237, 1211
SspMI	CTAG	2 cut(s)	332, 996
SstI	GAGCTC	1 cut(s)	965
StuI	AGGCCT	1 cut(s)	304
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	2 cut(s)	345, 524
TaaI	ACNGT	5 cut(s)	421, 479, 521, 597, 701
TaqI	TCGA	3 cut(s)	292, 388, 510
TasI	AATT	7 cut(s)	75, 295, 493, 546, 1042, 1173, 1241
TfiI	GAWTC	5 cut(s)	193, 311, 507, 885, 1142
Tru1I	TTAA	4 cut(s)	74, 162, 245, 357
Tru9I	TTAA	4 cut(s)	74, 162, 245, 357
TscAI	CASTG	4 cut(s)	482, 524, 542, 1209
TseFI	GTSAC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	413
TspRI	CASTG	4 cut(s)	482, 524, 542, 1209
Van91I	CCANNNNNTGG	2 cut(s)	351, 530
VpaK11BI	GGWCC	1 cut(s)	83
VspI	ATTAAT	1 cut(s)	74
XapI	RAATTY	3 cut(s)	295, 546, 1042
XceI	RCATGY	1 cut(s)	1004
XcmI	CCANNNNNNNNNTGG	1 cut(s)	348
XmiI	GTMKAC	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	884
XspI	CTAG	2 cut(s)	332, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.