Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0010662

Physical Location & Seq

Genomic Coordinates Forward (+)

22527149 .. 22534585

Gene Structure 7437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1107600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGCACAGAATAAAAAAAATAGGCTCTACCAAGTTTGGAAAGGAAGCAATTTTTTCTGTGGCGGGAGATTAATTTTTGGTCCTGATGTGGCATCTCTTCTTGTATCTACACTCCTTGTAGCCGGCCCAGCAGTTGCCTTCTGTTTGAAGGTTTATTTTAAAATAAAAAATGGGAATCACAAGAATGACGATCTATGGCTTCCTGTATTAGCTATTGGCTCAGTCCTTACAATTTTGGATTTAACCTTTCTCTTCTTGACTTCTGGTAGGGATCCTGGAATAATCCCTCGAAATTCAAGGCCTCCAGAATCAGATGAAGCATTTGATCTAGCTACCCCATCCATGGAGTGGGTTAATGAAAGAACACCTCATTTGAAACTACCTCGAACAAAAGATGTCGTTGTAAATGGTCACACAGTAAAAGTGAAGTATTGCGATACTTGTTTGCTTTATCGCCCTCCCCGCGTATCTCACTGTTCTATCTGCAACAATTGCGTTCAGAGATTTGATCATCACTGTCCATGGGTTGGTCAGTGCATTGGAATTCGTAACTATCGGTTTTTCTTCATGTTCATATCAACCTCAACCATACTGTGCATATATGTTTTTGTCTTCTCTTGGATAAACATATTTAAAACAGGAGGCAGAATAGCTTTTTCGAAAGACATTGTGTCGGATTTCCTTTTAACGTACTGTTTCATTGCAATCTGGTTTGTTGGTGGCCTTACACTCTTCCATTCCTACTTGATATGCACAAACCAGACAACATATGAAAACTTTCGGTACCGATATGATAAGAAGGAGAACCCATATAACAAAGGAATGATTTGGAATGTCAAAGAAGTTTTTTTCTCCAAAATCCCTCCTTCAATGAATAGATTCCGTTCATTCATTGAGATGGATGAAGAGATGATTGCAGGATCTGGGACTCCAAATAATGGGGAAGGTATTATGAGTTCAAAGGAGAAAATAGATATTGAAATGGGAACTAGGCTTGCAGAGGACAATGGTTTTTCACTTCCAAACATTTTGCGGAATTTTGACTACGATGATTTGGAGGATGATTTGAAGGATGCAGGAGAACAACACAGGCCTGCTTTTGACCCCCTTTTTCCCGTTCAGCCAGAAGTAAAAGAATCTGTGCAATACTCAGTAGATGAAGATAAAATTACAGAAAGTGTTGCTACAAGGGATGCGGTGAAATATTCTGTGCAAAGCTCACCTCCGGGAGATGAATTGGGAGCATCTGGCCATAGCACCACTTCCTTTGATGGAGCAAATGAGGAAGTCGATTGTGGAAATAACAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005886 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030154 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035618 GO:0040007 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0099402 GO:0120025 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04391 map04391

Pfam Domains

Protein Families

DHHC

Protein Analysis

438

Amino Acids

49.55

Weight (kDa)

5.9

Isoelectric Point (pI)

29.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	142 - 261	3.8e-34	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56930 AT3G56930
fragaria_vesca	FvH4_1g28800 FvH4_1g28800 FvH4_1g28800
malus_domestica	MD00G1107600.v1.1 MD14G1100600.v1.1
prunus_persica	Prupe.7G022600_v2.0.a1
pyrus_communis	pycom12g09230 pycom14g08900
rosa_chinensis	RchiOBHm_Chr3g0493221
rosa_laevigata	RLG00000022721
rosa_multiflora	Rmu_sc0003406.1_g000006
rosa_roxburghii	Rroxscaffold_6G00391740
rosa_rugosa	Rorug03G0259900
rosa_samantha	Rh3AG308800 Rh3BG344800 Rh3CG342000 Rh3DG344100
rosa_wichuraiana	Rw3G027150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	783
AccB1I	GGYRCC	1 cut(s)	783
AccB7I	CCANNNNNTGG	3 cut(s)	348, 527, 938
AccII	CGCG	1 cut(s)	465
AciI	CCGC	4 cut(s)	63, 463, 1033, 1196
AclWI	GGATC	3 cut(s)	266, 279, 928
AcoI	YGGCCR	1 cut(s)	1249
AcsI	RAATTY	3 cut(s)	292, 543, 1036
AfaI	GTAC	2 cut(s)	692, 785
AfiI	CCNNNNNNNGG	4 cut(s)	343, 348, 527, 938
AgsI	TTSAA	7 cut(s)	148, 297, 376, 870, 960, 980, 1069
AhdI	GACNNNNNGTC	1 cut(s)	670
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	4 cut(s)	212, 332, 653, 1218
AluI	AGCT	4 cut(s)	212, 332, 653, 1218
AlwI	GGATC	3 cut(s)	266, 279, 928
AlwNI	CAGNNNCTG	1 cut(s)	923
AoxI	GGCC	5 cut(s)	124, 299, 721, 1091, 1249
ApoI	RAATTY	3 cut(s)	292, 543, 1036
AseI	ATTAAT	1 cut(s)	71
Asp700I	GAANNNNTTC	2 cut(s)	777, 878
Asp718I	GGTACC	1 cut(s)	783
AspS9I	GGNCC	2 cut(s)	80, 125
AsuC2I	CCSGG	1 cut(s)	1227
AsuHPI	GGTGA	2 cut(s)	1210, 1212
AsuII	TTCGAA	1 cut(s)	659
AvaII	GGWCC	1 cut(s)	80
BalI	TGGCCA	1 cut(s)	1251
BamHI	GGATCC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	783
BbsI	GAAGAC	1 cut(s)	604
BccI	CCATC	3 cut(s)	346, 892, 1265
BciT130I	CCWGG	1 cut(s)	276
BclI	TGATCA	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	1227
BfaI	CTAG	2 cut(s)	329, 990
Bme1390I	CCNGG	2 cut(s)	276, 1227
Bme18I	GGWCC	1 cut(s)	80
BmeRI	GACNNNNNGTC	1 cut(s)	670
BmgT120I	GGNCC	2 cut(s)	80, 125
BmiI	GGNNCC	2 cut(s)	273, 785
BmrFI	CCNGG	2 cut(s)	276, 1227
BmsI	GCATC	4 cut(s)	101, 1063, 1183, 1253
BpiI	GAAGAC	1 cut(s)	604
BpmI	CTGGAG	1 cut(s)	288
Bpu14I	TTCGAA	1 cut(s)	659
BpuMI	CCSGG	1 cut(s)	1227
BsaJI	CCNNGG	2 cut(s)	342, 521
Bsc4I	CCNNNNNNNGG	4 cut(s)	343, 348, 527, 938
Bse118I	RCCGGY	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	699
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	342, 521
BseGI	GGATG	5 cut(s)	338, 907, 1066, 1078, 1198
BseLI	CCNNNNNNNGG	4 cut(s)	343, 348, 527, 938
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	2 cut(s)	234, 1164
BseYI	CCCAGC	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	465
BshFI	GGCC	5 cut(s)	126, 301, 723, 1093, 1251
BshNI	GGYRCC	1 cut(s)	783
BsiSI	CCGG	2 cut(s)	123, 1226
BslFI	GGGAC	1 cut(s)	940
BslI	CCNNNNNNNGG	4 cut(s)	343, 348, 527, 938
BsmFI	GGGAC	1 cut(s)	940
BsnI	GGCC	5 cut(s)	126, 301, 723, 1093, 1251
Bsp119I	TTCGAA	1 cut(s)	659
Bsp143I	GATC	5 cut(s)	190, 271, 325, 508, 920
Bsp19I	CCATGG	2 cut(s)	342, 521
BspACI	CCGC	4 cut(s)	63, 463, 1033, 1196
BspANI	GGCC	5 cut(s)	126, 301, 723, 1093, 1251
BspCNI	CTCAG	2 cut(s)	233, 1163
BspFNI	CGCG	1 cut(s)	465
BspLI	GGNNCC	2 cut(s)	273, 785
BspPI	GGATC	3 cut(s)	266, 279, 928
BspT104I	TTCGAA	1 cut(s)	659
BspT107I	GGYRCC	1 cut(s)	783
BsrDI	GCAATG	1 cut(s)	699
BsrFI	RCCGGY	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	342, 521
BssMI	GATC	5 cut(s)	190, 271, 325, 508, 920
BssT1I	CCWWGG	2 cut(s)	342, 521
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	5 cut(s)	418, 476, 518, 594, 695
Bst6I	CTCTTC	4 cut(s)	102, 257, 737, 900
BstAPI	GCANNNNNTGC	1 cut(s)	492
BstBI	TTCGAA	1 cut(s)	659
BstC8I	GCNNGC	3 cut(s)	124, 996, 1095
BstDEI	CTNAG	2 cut(s)	220, 1150
BstDSI	CCRYGG	2 cut(s)	342, 521
BstF5I	GGATG	5 cut(s)	338, 907, 1066, 1078, 1198
BstFNI	CGCG	1 cut(s)	465
BstKTI	GATC	5 cut(s)	193, 274, 328, 511, 923
BstMBI	GATC	5 cut(s)	190, 271, 325, 508, 920
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 462, 492
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	2 cut(s)	274, 1225
BstUI	CGCG	1 cut(s)	465
BstV2I	GAAGAC	1 cut(s)	604
BstX2I	RGATCY	2 cut(s)	271, 920
BstYI	RGATCY	2 cut(s)	271, 920
BsuRI	GGCC	5 cut(s)	126, 301, 723, 1093, 1251
BtgI	CCRYGG	2 cut(s)	342, 521
BtsCI	GGATG	5 cut(s)	338, 907, 1066, 1078, 1198
BtsIMutI	CAGTG	3 cut(s)	472, 514, 539
Cac8I	GCNNGC	3 cut(s)	124, 996, 1095
CaiI	CAGNNNCTG	1 cut(s)	923
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	80, 125
Csp6I	GTAC	2 cut(s)	691, 784
CspCI	CAANNNNNGTGG	2 cut(s)	1249, 1284
CviAII	CATG	3 cut(s)	343, 522, 568
CviQI	GTAC	2 cut(s)	691, 784
DdeI	CTNAG	2 cut(s)	220, 1150
DpnI	GATC	5 cut(s)	192, 273, 327, 510, 922
DpnII	GATC	5 cut(s)	190, 271, 325, 508, 920
DraI	TTTAAA	2 cut(s)	160, 634
DriI	GACNNNNNGTC	1 cut(s)	670
EaeI	YGGCCR	1 cut(s)	1249
Eam1104I	CTCTTC	4 cut(s)	102, 257, 737, 900
Eam1105I	GACNNNNNGTC	1 cut(s)	670
EarI	CTCTTC	4 cut(s)	102, 257, 737, 900
Eco130I	CCWWGG	2 cut(s)	342, 521
Eco147I	AGGCCT	2 cut(s)	301, 1093
Eco47I	GGWCC	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	543
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	2 cut(s)	342, 521
ErhI	CCWWGG	2 cut(s)	342, 521
FaeI	CATG	3 cut(s)	346, 525, 571
FaqI	GGGAC	1 cut(s)	940
FatI	CATG	3 cut(s)	342, 521, 567
FauI	CCCGC	2 cut(s)	56, 470
FauNDI	CATATG	1 cut(s)	769
FbaI	TGATCA	1 cut(s)	508
FokI	GGATG	5 cut(s)	325, 914, 1073, 1085, 1205
FspBI	CTAG	2 cut(s)	329, 990
GsaI	CCCAGC	1 cut(s)	131
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	5 cut(s)	126, 301, 723, 1093, 1251
HapII	CCGG	2 cut(s)	123, 1226
Hin1II	CATG	3 cut(s)	346, 525, 571
HinfI	GANTC	5 cut(s)	175, 308, 879, 928, 1136
HpaII	CCGG	2 cut(s)	123, 1226
HphI	GGTGA	2 cut(s)	1210, 1212
Hpy188I	TCNGA	3 cut(s)	313, 501, 676
Hpy188III	TCNNGA	3 cut(s)	83, 256, 305
HpyAV	CCTTC	6 cut(s)	142, 148, 793, 876, 938, 1063
HpyCH4III	ACNGT	5 cut(s)	418, 476, 518, 594, 695
HpyCH4IV	ACGT	1 cut(s)	689
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 462, 492
HpyF3I	CTNAG	2 cut(s)	220, 1150
HpySE526I	ACGT	1 cut(s)	689
Hsp92II	CATG	3 cut(s)	346, 525, 571
KpnI	GGTACC	1 cut(s)	787
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	5 cut(s)	190, 271, 325, 508, 920
LmnI	GCTCC	2 cut(s)	1241, 1274
LweI	GCATC	4 cut(s)	101, 1063, 1183, 1253
MaeI	CTAG	2 cut(s)	329, 990
MaeII	ACGT	1 cut(s)	689
MaeIII	GTNAC	2 cut(s)	410, 548
MalI	GATC	5 cut(s)	192, 273, 327, 510, 922
MboI	GATC	5 cut(s)	190, 271, 325, 508, 920
MboII	GAAGA	7 cut(s)	89, 244, 556, 604, 724, 917, 1172
MfeI	CAATTG	1 cut(s)	490
MflI	RGATCY	2 cut(s)	271, 920
MlsI	TGGCCA	1 cut(s)	1251
MluCI	AATT	9 cut(s)	49, 72, 231, 292, 490, 543, 1036, 1167, 1235
MluNI	TGGCCA	1 cut(s)	1251
MlyI	GAGTC	1 cut(s)	922
MmeI	TCCRAC	1 cut(s)	654
Mox20I	TGGCCA	1 cut(s)	1251
MroNI	GCCGGC	1 cut(s)	122
MroXI	GAANNNNTTC	2 cut(s)	777, 878
MscI	TGGCCA	1 cut(s)	1251
MseI	TTAA	6 cut(s)	71, 159, 242, 354, 633, 686
MslI	CAYNNNNRTG	2 cut(s)	183, 896
Msp20I	TGGCCA	1 cut(s)	1251
MspI	CCGG	2 cut(s)	123, 1226
MspR9I	CCNGG	2 cut(s)	276, 1227
MunI	CAATTG	1 cut(s)	490
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	465
MwoI	GCNNNNNNNGC	3 cut(s)	128, 462, 492
NaeI	GCCGGC	1 cut(s)	124
NciI	CCSGG	1 cut(s)	1227
NcoI	CCATGG	2 cut(s)	342, 521
NdeI	CATATG	1 cut(s)	769
NdeII	GATC	5 cut(s)	190, 271, 325, 508, 920
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	3 cut(s)	346, 525, 571
NlaIV	GGNNCC	2 cut(s)	273, 785
NmuCI	GTSAC	1 cut(s)	410
NspV	TTCGAA	1 cut(s)	659
PceI	AGGCCT	2 cut(s)	301, 1093
PdiI	GCCGGC	1 cut(s)	124
PdmI	GAANNNNTTC	2 cut(s)	777, 878
PfeI	GAWTC	4 cut(s)	175, 308, 879, 1136
PflMI	CCANNNNNTGG	3 cut(s)	348, 527, 938
PfoI	TCCNGGA	2 cut(s)	274, 1225
PleI	GAGTC	1 cut(s)	922
PpsI	GAGTC	1 cut(s)	922
PshBI	ATTAAT	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	2 cut(s)	273, 785
PspPI	GGNCC	2 cut(s)	80, 125
PsrI	GAACNNNNNNTAC	2 cut(s)	940, 972
PstNI	CAGNNNCTG	1 cut(s)	923
PsuI	RGATCY	2 cut(s)	271, 920
RsaI	GTAC	2 cut(s)	692, 785
RsaNI	GTAC	2 cut(s)	691, 784
RseI	CAYNNNNRTG	2 cut(s)	183, 896
SaqAI	TTAA	6 cut(s)	71, 159, 242, 354, 633, 686
Sau3AI	GATC	5 cut(s)	190, 271, 325, 508, 920
Sau96I	GGNCC	2 cut(s)	80, 125
SchI	GAGTC	1 cut(s)	922
ScrFI	CCNGG	2 cut(s)	276, 1227
SfaNI	GCATC	4 cut(s)	101, 1063, 1183, 1253
SfuI	TTCGAA	1 cut(s)	659
SinI	GGWCC	1 cut(s)	80
SmiMI	CAYNNNNRTG	2 cut(s)	183, 896
Sse9I	AATT	9 cut(s)	49, 72, 231, 292, 490, 543, 1036, 1167, 1235
SseBI	AGGCCT	2 cut(s)	301, 1093
SsiI	CCGC	4 cut(s)	63, 463, 1033, 1196
SspI	AATATT	1 cut(s)	1205
SspMI	CTAG	2 cut(s)	329, 990
StuI	AGGCCT	2 cut(s)	301, 1093
StyD4I	CCNGG	2 cut(s)	274, 1225
StyI	CCWWGG	2 cut(s)	342, 521
TaaI	ACNGT	5 cut(s)	418, 476, 518, 594, 695
TaiI	ACGT	1 cut(s)	692
TaqI	TCGA	4 cut(s)	289, 385, 659, 1290
TasI	AATT	9 cut(s)	49, 72, 231, 292, 490, 543, 1036, 1167, 1235
TfiI	GAWTC	4 cut(s)	175, 308, 879, 1136
Tru1I	TTAA	6 cut(s)	71, 159, 242, 354, 633, 686
Tru9I	TTAA	6 cut(s)	71, 159, 242, 354, 633, 686
TscAI	CASTG	3 cut(s)	479, 521, 539
TseFI	GTSAC	1 cut(s)	410
Tsp45I	GTSAC	1 cut(s)	410
TspGWI	ACGGA	1 cut(s)	872
TspRI	CASTG	3 cut(s)	479, 521, 539
Van91I	CCANNNNNTGG	3 cut(s)	348, 527, 938
VpaK11BI	GGWCC	1 cut(s)	80
VspI	ATTAAT	1 cut(s)	71
XapI	RAATTY	3 cut(s)	292, 543, 1036
XcmI	CCANNNNNNNNNTGG	1 cut(s)	345
XmnI	GAANNNNTTC	2 cut(s)	777, 878
XspI	CTAG	2 cut(s)	329, 990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.