Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003406.1

Orthogroup ID

OG0010662

Physical Location & Seq

Genomic Coordinates Forward (+)

9407 .. 11473

Gene Structure 2067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003406.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

atgaaaccatataagattcctgagtgtaaaagactaccaggaatttctgagcgtaataacttccaagaaattaaattcccagaggaaaagtgctgggaaaagtcactagaaagtagccggaaaagtcaccggaaagttgaccggtcgctgacgtggctctgggtccgctactgttgtggcagtggggtccgtgctgacgtggcagtgggtcatgatgctgacgcggcagtaggtccctgggagatgacgtggcagtgggtcctggaggctgacgtggtggtgggcctgggggcttctgctgacaaaatttcgtgtaaattggacgtcggaaagatggtgaaccggtggaatattcgatgcggattgtatggagcttccggtggtcgattcggtaggtttctggccggttctggtggttatgtcgccggttctgaattcctggggtcgagggcttcaagttgtgtggcggtggcagaaaagggtttaaggttttgtattcagattcaaggtttggctatttgtttcaagacgacgtatgagaacttccggtatcgttataaaggagtgatttggaacttcaaagaaatttttttctccagcatccctccttcagtgattagattccgatcattcattgacacagatgaacaggtgattgtagaatccgtagctccaaatcttggagaaggtattatgagctcaaaagagaaaattgatattgaaatgggaactgggatagtggatgacaatggctttgcaattccggatattttgcgaaatcttgaatttgctgattatgaggaggatttgaagaatcaaggggaagagcaagaacctgcttcgtttgactctattcagccagaaggaaaagaatcattgaaatactcgataaatatagatgaaagtatagaatctatgcatagctatactttaaggaatgaacttagagaatctatccagagtactatttccttggggggagcaattgagaaaggtgattgtgaaaataattctcatgaaaccttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005886 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030154 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035618 GO:0040007 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0099402 GO:0120025 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04391 map04391

Pfam Domains

Protein Families

DHHC

Protein Analysis

342

Amino Acids

38.31

Weight (kDa)

5.17

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56930 AT3G56930
fragaria_vesca	FvH4_1g28800 FvH4_1g28800 FvH4_1g28800
malus_domestica	MD00G1107600.v1.1 MD14G1100600.v1.1
prunus_persica	Prupe.7G022600_v2.0.a1
pyrus_communis	pycom12g09230 pycom14g08900
rosa_chinensis	RchiOBHm_Chr3g0493221
rosa_laevigata	RLG00000022721
rosa_multiflora	Rmu_sc0003406.1_g000006
rosa_roxburghii	Rroxscaffold_6G00391740
rosa_rugosa	Rorug03G0259900
rosa_samantha	Rh3AG308800 Rh3BG344800 Rh3CG342000 Rh3DG344100
rosa_wichuraiana	Rw3G027150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	558, 1027
AatII	GACGTC	1 cut(s)	327
Acc36I	ACCTGC	1 cut(s)	844
AccB7I	CCANNNNNTGG	1 cut(s)	680
AccII	CGCG	1 cut(s)	224
AccIII	TCCGGA	1 cut(s)	763
AciI	CCGC	4 cut(s)	166, 224, 360, 467
AcoI	YGGCCR	1 cut(s)	402
AcsI	RAATTY	6 cut(s)	42, 74, 306, 434, 585, 785
AcuI	CTGAAG	1 cut(s)	594
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	1 cut(s)	964
AfiI	CCNNNNNNNGG	1 cut(s)	680
AgeI	ACCGGT	2 cut(s)	141, 342
AgsI	TTSAA	8 cut(s)	456, 506, 526, 580, 722, 785, 811, 880
AjiI	CACGTC	4 cut(s)	153, 199, 249, 274
AjnI	CCWGG	5 cut(s)	37, 236, 261, 285, 438
AluBI	AGCT	4 cut(s)	374, 671, 699, 924
AluI	AGCT	4 cut(s)	374, 671, 699, 924
Alw21I	GWGCWC	1 cut(s)	701
Aor13HI	TCCGGA	1 cut(s)	763
AoxI	GGCC	2 cut(s)	283, 402
ApoI	RAATTY	6 cut(s)	42, 74, 306, 434, 585, 785
ArsI	GACNNNNNNTTYG	2 cut(s)	737, 769
AsiGI	ACCGGT	2 cut(s)	141, 342
AspS9I	GGNCC	5 cut(s)	163, 187, 233, 259, 283
AsuHPI	GGTGA	4 cut(s)	119, 349, 664, 1007
AvaII	GGWCC	4 cut(s)	163, 187, 233, 259
BanII	GRGCYC	1 cut(s)	701
BarI	GAAGNNNNNNTAC	2 cut(s)	527, 559
Bbv12I	GWGCWC	1 cut(s)	701
BccI	CCATC	1 cut(s)	328
BciT130I	CCWGG	5 cut(s)	39, 238, 263, 287, 440
BfaI	CTAG	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	844
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
BmcAI	AGTACT	1 cut(s)	964
Bme1390I	CCNGG	5 cut(s)	39, 238, 263, 287, 440
Bme18I	GGWCC	4 cut(s)	163, 187, 233, 259
BmgBI	CACGTC	4 cut(s)	153, 199, 249, 274
BmgT120I	GGNCC	5 cut(s)	163, 187, 233, 259, 283
BmiI	GGNNCC	4 cut(s)	164, 188, 235, 260
BmrFI	CCNGG	5 cut(s)	39, 238, 263, 287, 440
BmrI	ACTGGG	1 cut(s)	741
BmsI	GCATC	3 cut(s)	205, 347, 609
BmuI	ACTGGG	1 cut(s)	741
BpmI	CTGGAG	2 cut(s)	284, 580
BsaBI	GATNNNNATC	1 cut(s)	625
BsaHI	GRCGYC	1 cut(s)	324
BsaJI	CCNNGG	5 cut(s)	236, 237, 286, 439, 972
BsaWI	WCCGGW	6 cut(s)	129, 141, 342, 377, 546, 763
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
Bse118I	RCCGGY	4 cut(s)	141, 342, 404, 425
Bse1I	ACTGG	1 cut(s)	736
Bse8I	GATNNNNATC	1 cut(s)	625
BseAI	TCCGGA	1 cut(s)	763
BseBI	CCWGG	5 cut(s)	39, 238, 263, 287, 440
BseDI	CCNNGG	5 cut(s)	236, 237, 286, 439, 972
BseGI	GGATG	2 cut(s)	600, 748
BseJI	GATNNNNATC	1 cut(s)	625
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMII	CTCAG	2 cut(s)	12, 39
BseNI	ACTGG	1 cut(s)	736
BseRI	GAGGAG	1 cut(s)	815
BseYI	CCCAGC	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	224
Bsh1285I	CGRYCG	1 cut(s)	146
BshFI	GGCC	2 cut(s)	285, 404
BshTI	ACCGGT	2 cut(s)	141, 342
BsiEI	CGRYCG	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	701
BsiSI	CCGG	9 cut(s)	118, 130, 142, 343, 378, 405, 426, 547, 764
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	680
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	285, 404
Bsp1286I	GDGCHC	1 cut(s)	701
Bsp13I	TCCGGA	1 cut(s)	763
Bsp143I	GATC	1 cut(s)	626
BspACI	CCGC	4 cut(s)	166, 224, 360, 467
BspANI	GGCC	2 cut(s)	285, 404
BspCNI	CTCAG	2 cut(s)	13, 40
BspEI	TCCGGA	1 cut(s)	763
BspFNI	CGCG	1 cut(s)	224
BspHI	TCATGA	2 cut(s)	211, 1015
BspLI	GGNNCC	4 cut(s)	164, 188, 235, 260
BspMI	ACCTGC	1 cut(s)	844
BspQI	GCTCTTC	1 cut(s)	819
BsrFI	RCCGGY	4 cut(s)	141, 342, 404, 425
BsrI	ACTGG	1 cut(s)	736
BssAI	RCCGGY	4 cut(s)	141, 342, 404, 425
BssECI	CCNNGG	5 cut(s)	236, 237, 286, 439, 972
BssMI	GATC	1 cut(s)	626
BssNI	GRCGYC	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	972
Bst2UI	CCWGG	5 cut(s)	39, 238, 263, 287, 440
Bst4CI	ACNGT	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	819
BstACI	GRCGYC	1 cut(s)	324
BstDEI	CTNAG	3 cut(s)	21, 48, 944
BstF5I	GGATG	2 cut(s)	600, 748
BstFNI	CGCG	1 cut(s)	224
BstKTI	GATC	1 cut(s)	629
BstMBI	GATC	1 cut(s)	626
BstMCI	CGRYCG	1 cut(s)	146
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 200, 224
BstNI	CCWGG	5 cut(s)	39, 238, 263, 287, 440
BstSCI	CCNGG	5 cut(s)	37, 236, 261, 285, 438
BstUI	CGCG	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	285, 404
BtrI	CACGTC	4 cut(s)	153, 199, 249, 274
BtsCI	GGATG	2 cut(s)	600, 748
BtsI	GCAGTG	3 cut(s)	187, 210, 260
BtsIMutI	CAGTG	4 cut(s)	187, 210, 260, 618
BveI	ACCTGC	1 cut(s)	844
CciI	TCATGA	2 cut(s)	211, 1015
Cfr10I	RCCGGY	4 cut(s)	141, 342, 404, 425
Cfr13I	GGNCC	5 cut(s)	163, 187, 233, 259, 283
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	963
CspAI	ACCGGT	2 cut(s)	141, 342
CspCI	CAANNNNNGTGG	2 cut(s)	444, 479
CviAII	CATG	2 cut(s)	212, 1016
CviQI	GTAC	1 cut(s)	963
DdeI	CTNAG	3 cut(s)	21, 48, 944
DpnI	GATC	1 cut(s)	628
DpnII	GATC	1 cut(s)	626
EaeI	YGGCCR	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	819
EarI	CTCTTC	1 cut(s)	819
Ecl136II	GAGCTC	1 cut(s)	699
Eco130I	CCWWGG	1 cut(s)	972
Eco24I	GRGCYC	1 cut(s)	701
Eco47I	GGWCC	4 cut(s)	163, 187, 233, 259
Eco53kI	GAGCTC	1 cut(s)	699
Eco57I	CTGAAG	1 cut(s)	594
EcoICRI	GAGCTC	1 cut(s)	699
EcoO109I	RGGNCCY	2 cut(s)	233, 259
EcoRI	GAATTC	1 cut(s)	434
EcoRII	CCWGG	5 cut(s)	37, 236, 261, 285, 438
EcoT14I	CCWWGG	1 cut(s)	972
EcoT22I	ATGCAT	1 cut(s)	921
EcoT38I	GRGCYC	1 cut(s)	701
ErhI	CCWWGG	1 cut(s)	972
FaeI	CATG	2 cut(s)	215, 1019
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	2 cut(s)	211, 1015
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	2 cut(s)	587, 755
FriOI	GRGCYC	1 cut(s)	701
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	1 cut(s)	225
GsaI	CCCAGC	1 cut(s)	97
GsuI	CTGGAG	2 cut(s)	284, 580
HaeIII	GGCC	2 cut(s)	285, 404
HapII	CCGG	9 cut(s)	118, 130, 142, 343, 378, 405, 426, 547, 764
HgaI	GACGC	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	2 cut(s)	215, 1019
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HpaII	CCGG	9 cut(s)	118, 130, 142, 343, 378, 405, 426, 547, 764
HphI	GGTGA	4 cut(s)	119, 349, 664, 1007
Hpy166II	GTNNAC	2 cut(s)	139, 340
Hpy188I	TCNGA	5 cut(s)	49, 329, 433, 501, 626
Hpy188III	TCNNGA	7 cut(s)	20, 212, 526, 764, 782, 958, 1016
Hpy8I	GTNNAC	2 cut(s)	139, 340
Hpy99I	CGWCG	2 cut(s)	329, 535
HpyAV	CCTTC	3 cut(s)	618, 680, 857
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4IV	ACGT	6 cut(s)	152, 198, 248, 273, 324, 533
HpyCH4V	TGCA	2 cut(s)	758, 919
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 200, 224
HpyF3I	CTNAG	3 cut(s)	21, 48, 944
HpySE526I	ACGT	6 cut(s)	152, 198, 248, 273, 324, 533
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	2 cut(s)	215, 1019
Kpn2I	TCCGGA	1 cut(s)	763
Kzo9I	GATC	1 cut(s)	626
LguI	GCTCTTC	1 cut(s)	819
LmnI	GCTCC	3 cut(s)	371, 676, 980
LweI	GCATC	3 cut(s)	205, 347, 609
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	6 cut(s)	152, 198, 248, 273, 324, 533
MaeIII	GTNAC	2 cut(s)	102, 125
MalI	GATC	1 cut(s)	628
MboI	GATC	1 cut(s)	626
MboII	GAAGA	2 cut(s)	823, 836
MfeI	CAATTG	1 cut(s)	984
MhlI	GDGCHC	1 cut(s)	701
MlyI	GAGTC	1 cut(s)	842
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	6 cut(s)	76, 259, 441, 615, 793, 796
Mph1103I	ATGCAT	1 cut(s)	921
MroI	TCCGGA	1 cut(s)	763
MseI	TTAA	3 cut(s)	72, 485, 932
MspI	CCGG	9 cut(s)	118, 130, 142, 343, 378, 405, 426, 547, 764
MspR9I	CCNGG	5 cut(s)	39, 238, 263, 287, 440
MunI	CAATTG	1 cut(s)	984
MvaI	CCWGG	5 cut(s)	39, 238, 263, 287, 440
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	3 cut(s)	154, 200, 224
NdeII	GATC	1 cut(s)	626
NlaIII	CATG	2 cut(s)	215, 1019
NlaIV	GGNNCC	4 cut(s)	164, 188, 235, 260
NmuCI	GTSAC	2 cut(s)	102, 125
NsiI	ATGCAT	1 cut(s)	921
PagI	TCATGA	2 cut(s)	211, 1015
PasI	CCCWGGG	1 cut(s)	237
PciSI	GCTCTTC	1 cut(s)	819
PfeI	GAWTC	9 cut(s)	16, 387, 502, 621, 662, 814, 872, 911, 950
PflMI	CCANNNNNTGG	1 cut(s)	680
PfoI	TCCNGGA	1 cut(s)	261
PinAI	ACCGGT	2 cut(s)	141, 342
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	1 cut(s)	842
PpsI	GAGTC	1 cut(s)	842
PpuMI	RGGWCCY	2 cut(s)	233, 259
PsiI	TTATAA	2 cut(s)	558, 1027
Psp124BI	GAGCTC	1 cut(s)	701
Psp5II	RGGWCCY	2 cut(s)	233, 259
Psp6I	CCWGG	5 cut(s)	37, 236, 261, 285, 438
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	5 cut(s)	37, 236, 261, 285, 438
PspN4I	GGNNCC	4 cut(s)	164, 188, 235, 260
PspPI	GGNCC	5 cut(s)	163, 187, 233, 259, 283
PspPPI	RGGWCCY	2 cut(s)	233, 259
RsaI	GTAC	1 cut(s)	964
RsaNI	GTAC	1 cut(s)	963
SacI	GAGCTC	1 cut(s)	701
SapI	GCTCTTC	1 cut(s)	819
SaqAI	TTAA	3 cut(s)	72, 485, 932
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	1 cut(s)	626
Sau96I	GGNCC	5 cut(s)	163, 187, 233, 259, 283
ScaI	AGTACT	1 cut(s)	964
SchI	GAGTC	1 cut(s)	842
ScrFI	CCNGG	5 cut(s)	39, 238, 263, 287, 440
SduI	GDGCHC	1 cut(s)	701
SfaNI	GCATC	3 cut(s)	205, 347, 609
SinI	GGWCC	4 cut(s)	163, 187, 233, 259
SsiI	CCGC	4 cut(s)	166, 224, 360, 467
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	701
StyD4I	CCNGG	5 cut(s)	37, 236, 261, 285, 438
StyI	CCWWGG	1 cut(s)	972
TaaI	ACNGT	1 cut(s)	173
TaiI	ACGT	6 cut(s)	155, 201, 251, 276, 327, 536
TaqI	TCGA	4 cut(s)	355, 385, 446, 887
TatI	WGTACW	1 cut(s)	962
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	9 cut(s)	16, 387, 502, 621, 662, 814, 872, 911, 950
Tru1I	TTAA	3 cut(s)	72, 485, 932
Tru9I	TTAA	3 cut(s)	72, 485, 932
TscAI	CASTG	4 cut(s)	187, 210, 260, 618
TseFI	GTSAC	2 cut(s)	102, 125
Tsp45I	GTSAC	2 cut(s)	102, 125
TspDTI	ATGAA	5 cut(s)	17, 622, 660, 915, 954
TspGWI	ACGGA	2 cut(s)	179, 655
TspRI	CASTG	4 cut(s)	187, 210, 260, 618
Van91I	CCANNNNNTGG	1 cut(s)	680
VpaK11BI	GGWCC	4 cut(s)	163, 187, 233, 259
XapI	RAATTY	6 cut(s)	42, 74, 306, 434, 585, 785
XspI	CTAG	1 cut(s)	107
ZraI	GACGTC	1 cut(s)	325
ZrmI	AGTACT	1 cut(s)	964
Zsp2I	ATGCAT	1 cut(s)	921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.