Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0010662

Physical Location & Seq

Genomic Coordinates Reverse (-)

38745683 .. 38760021

Gene Structure 14339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG308800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGCACACGATAAACCCAAGAGGCTCTACCAACTTTGGAAGGGAAGCAATAACTTTTTCTTTGGAGGGAGATTAGTTTTTGGTCCTGATGTTGCATCTCTTACTCTGTCTGTGCTTCTTATTGCTGTCCCAGCAATAACCTTTTGTATAAAGGTTTATTTTAAACTCCAACATGTAATTAAAAAGGAGGACAGTATTTGGTATCCTGTATTAATTGTCGGCTCATTGCTTACTGCTTTGGATTTAACATTTCTATTCTTGACATCTGGTCGAGATCCTGGGATAATCCCTAGAAATTCAAATCCTCCTGAATCAGATGAAGCATTTAATGTAACTACCCCATCCATGGAGTGGGTTAACGGAAGAACTCCTCATCTGAAACTACCGCGAACAAAAGAGGTCAATATTAATGGTCACTCGGTAAAAGTGAAGTACTGTGATACTTGTTTTCTTTATCGGCCTCCCCGTGCATCTCATTGTTCTATCTGCAACAATTGTGTTCAGCGGTTTGATCATCATTGTCCATGGGTTGGTCAGTGCATTGGAATTCGTAACTATCGATTTTTCTTAATGTTCATATCAACATCAACCATACTGTGCATATATGTGTTCTCCTTCACTTGGGTGAACATTATTGAGACCAAGAATATCCGGACAGCTATGTCAAAAGATATTCTATCAGATTTTCTTTTAGCTTACTGCTTCATTGCTGTTTGGTTTGTGGGTGGCCTTACAATTTTCCATTCCTACTTGATATGCACCAACCAGACGACGTATGAGAACTTCCGGTATCGTTATGATCAGAAGGAGAACCCATATAACAAAGGAGTGATTTGGAACTTCAAAGAAATTTTTTTCTCCAGCATCCCTCCTTCAGTGATTAGATTCCGATCATTCATTGACACAGATGAACAGGTGATTGTAGAATCCGTAGCCCCAAATCTTGGAGAAGGTATTATGAGCTCAAAAGAGAAAATTGATATTGAAATGGGAACTGGGATAGCGGATGACAATGGCTTTGCAATTCCGGATATATTGCGAAATCTTGAATTTGTTGATTATGAGGAGGATTTGAAGAATCAAGGGGAAGAGCAAGAACCTGCTTCGTTTGACTCTTTTCAGCCAGAAGGAAAAGAATCATTGAAATGCTCAATAAATATAGATGAAAGTATAGAATCTGTGCATAGCTATACTATAAGGAATGAACTTAGAGAATATATCCAGAGTACTATTTCCTTGGGGGGAGCAATTGAGAAAGGTGATTGTGAAAATAATTCTCATGAAACCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005886 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030154 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035618 GO:0040007 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0099402 GO:0120025 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04391 map04391

Pfam Domains

Protein Families

DHHC

Protein Analysis

430

Amino Acids

49.19

Weight (kDa)

5.56

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	143 - 263	4.2e-36	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56930 AT3G56930
fragaria_vesca	FvH4_1g28800 FvH4_1g28800 FvH4_1g28800
malus_domestica	MD00G1107600.v1.1 MD14G1100600.v1.1
prunus_persica	Prupe.7G022600_v2.0.a1
pyrus_communis	pycom12g09230 pycom14g08900
rosa_chinensis	RchiOBHm_Chr3g0493221
rosa_laevigata	RLG00000022721
rosa_multiflora	Rmu_sc0003406.1_g000006
rosa_roxburghii	Rroxscaffold_6G00391740
rosa_rugosa	Rorug03G0259900
rosa_samantha	Rh3AG308800 Rh3BG344800 Rh3CG342000 Rh3DG344100
rosa_wichuraiana	Rw3G027150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1291
AasI	GACNNNNNNGTC	1 cut(s)	661
Acc36I	ACCTGC	1 cut(s)	1108
AccB7I	CCANNNNNTGG	3 cut(s)	351, 530, 944
AccII	CGCG	1 cut(s)	388
AccIII	TCCGGA	2 cut(s)	651, 1027
AciI	CCGC	3 cut(s)	386, 505, 1004
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	4 cut(s)	295, 546, 849, 1049
AcuI	CTGAAG	1 cut(s)	858
AfaI	GTAC	2 cut(s)	434, 1228
AfiI	CCNNNNNNNGG	5 cut(s)	346, 351, 530, 621, 944
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	6 cut(s)	300, 844, 986, 1049, 1075, 1144
AhdI	GACNNNNNGTC	1 cut(s)	267
AjnI	CCWGG	1 cut(s)	277
AleI	CACNNNNGTG	1 cut(s)	623
AluBI	AGCT	4 cut(s)	659, 695, 963, 1188
AluI	AGCT	4 cut(s)	659, 695, 963, 1188
Alw21I	GWGCWC	1 cut(s)	965
Alw26I	GTCTC	1 cut(s)	632
AlwI	GGATC	1 cut(s)	269
Aor13HI	TCCGGA	2 cut(s)	651, 1027
AoxI	GGCC	2 cut(s)	458, 727
ApoI	RAATTY	4 cut(s)	295, 546, 849, 1049
ArsI	GACNNNNNNTTYG	2 cut(s)	1001, 1033
AseI	ATTAAT	2 cut(s)	212, 408
AspS9I	GGNCC	1 cut(s)	83
AsuHPI	GGTGA	3 cut(s)	637, 928, 1271
AvaII	GGWCC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	965
BarI	GAAGNNNNNNTAC	2 cut(s)	767, 799
Bbv12I	GWGCWC	1 cut(s)	965
BccI	CCATC	1 cut(s)	349
BciT130I	CCWGG	1 cut(s)	279
BciVI	GTATCC	1 cut(s)	213
BclI	TGATCA	2 cut(s)	511, 799
BcoDI	GTCTC	1 cut(s)	632
BfaI	CTAG	1 cut(s)	291
BfuAI	ACCTGC	1 cut(s)	1108
BfuI	GTATCC	1 cut(s)	213
BmcAI	AGTACT	2 cut(s)	434, 1228
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	1 cut(s)	83
BmeRI	GACNNNNNGTC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	279
BmrI	ACTGGG	1 cut(s)	1005
BmsI	GCATC	3 cut(s)	104, 479, 873
BmuI	ACTGGG	1 cut(s)	1005
BpmI	CTGGAG	1 cut(s)	844
Bsa29I	ATCGAT	1 cut(s)	559
BsaBI	GATNNNNATC	1 cut(s)	889
BsaI	GGTCTC	1 cut(s)	632
BsaJI	CCNNGG	4 cut(s)	278, 345, 524, 1236
BsaWI	WCCGGW	3 cut(s)	651, 786, 1027
Bsc4I	CCNNNNNNNGG	5 cut(s)	346, 351, 530, 621, 944
Bse1I	ACTGG	1 cut(s)	1000
Bse3DI	GCAATG	2 cut(s)	224, 705
Bse8I	GATNNNNATC	1 cut(s)	889
BseAI	TCCGGA	2 cut(s)	651, 1027
BseBI	CCWGG	1 cut(s)	279
BseCI	ATCGAT	1 cut(s)	559
BseDI	CCNNGG	4 cut(s)	278, 345, 524, 1236
BseGI	GGATG	3 cut(s)	341, 864, 1012
BseJI	GATNNNNATC	1 cut(s)	889
BseLI	CCNNNNNNNGG	5 cut(s)	346, 351, 530, 621, 944
BseMI	GCAATG	2 cut(s)	224, 705
BseNI	ACTGG	1 cut(s)	1000
BseRI	GAGGAG	2 cut(s)	360, 1079
BseYI	CCCAGC	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	388
BshFI	GGCC	2 cut(s)	460, 729
BshVI	ATCGAT	1 cut(s)	559
BsiHKAI	GWGCWC	1 cut(s)	965
BsiSI	CCGG	3 cut(s)	652, 787, 1028
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	5 cut(s)	346, 351, 530, 621, 944
BsmAI	GTCTC	1 cut(s)	632
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	460, 729
Bso31I	GGTCTC	1 cut(s)	632
Bsp1286I	GDGCHC	1 cut(s)	965
Bsp13I	TCCGGA	2 cut(s)	651, 1027
Bsp143I	GATC	4 cut(s)	274, 511, 799, 890
Bsp19I	CCATGG	2 cut(s)	345, 524
BspACI	CCGC	3 cut(s)	386, 505, 1004
BspANI	GGCC	2 cut(s)	460, 729
BspDI	ATCGAT	1 cut(s)	559
BspEI	TCCGGA	2 cut(s)	651, 1027
BspFNI	CGCG	1 cut(s)	388
BspHI	TCATGA	1 cut(s)	1279
BspMI	ACCTGC	1 cut(s)	1108
BspPI	GGATC	1 cut(s)	269
BspQI	GCTCTTC	1 cut(s)	1083
BspTNI	GGTCTC	1 cut(s)	632
BsrDI	GCAATG	2 cut(s)	224, 705
BsrI	ACTGG	1 cut(s)	1000
BssECI	CCNNGG	4 cut(s)	278, 345, 524, 1236
BssMI	GATC	4 cut(s)	274, 511, 799, 890
BssT1I	CCWWGG	3 cut(s)	345, 524, 1236
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	3 cut(s)	194, 437, 597
Bst6I	CTCTTC	1 cut(s)	1083
BstDEI	CTNAG	1 cut(s)	1208
BstDSI	CCRYGG	2 cut(s)	345, 524
BstF5I	GGATG	3 cut(s)	341, 864, 1012
BstFNI	CGCG	1 cut(s)	388
BstKTI	GATC	4 cut(s)	277, 514, 802, 893
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	4 cut(s)	274, 511, 799, 890
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	277
BstUI	CGCG	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
Bsu15I	ATCGAT	1 cut(s)	559
BsuI	GTATCC	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	460, 729
BsuTUI	ATCGAT	1 cut(s)	559
BtgI	CCRYGG	2 cut(s)	345, 524
BtsCI	GGATG	3 cut(s)	341, 864, 1012
BtsIMutI	CAGTG	2 cut(s)	542, 882
BveI	ACCTGC	1 cut(s)	1108
CciI	TCATGA	1 cut(s)	1279
Cfr13I	GGNCC	1 cut(s)	83
ClaI	ATCGAT	1 cut(s)	559
Csp6I	GTAC	2 cut(s)	433, 1227
CviAII	CATG	4 cut(s)	173, 346, 525, 1280
CviQI	GTAC	2 cut(s)	433, 1227
DdeI	CTNAG	1 cut(s)	1208
DpnI	GATC	4 cut(s)	276, 513, 801, 892
DpnII	GATC	4 cut(s)	274, 511, 799, 890
DraI	TTTAAA	1 cut(s)	163
DrdI	GACNNNNNNGTC	1 cut(s)	661
DriI	GACNNNNNGTC	1 cut(s)	267
DseDI	GACNNNNNNGTC	1 cut(s)	661
Eam1104I	CTCTTC	1 cut(s)	1083
Eam1105I	GACNNNNNGTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	1083
Ecl136II	GAGCTC	1 cut(s)	963
Eco130I	CCWWGG	3 cut(s)	345, 524, 1236
Eco24I	GRGCYC	1 cut(s)	965
Eco31I	GGTCTC	1 cut(s)	632
Eco47I	GGWCC	1 cut(s)	83
Eco53kI	GAGCTC	1 cut(s)	963
Eco57I	CTGAAG	1 cut(s)	858
EcoICRI	GAGCTC	1 cut(s)	963
EcoRI	GAATTC	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	3 cut(s)	345, 524, 1236
EcoT38I	GRGCYC	1 cut(s)	965
ErhI	CCWWGG	3 cut(s)	345, 524, 1236
FaeI	CATG	4 cut(s)	176, 349, 528, 1283
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	4 cut(s)	172, 345, 524, 1279
FbaI	TGATCA	2 cut(s)	511, 799
FokI	GGATG	3 cut(s)	328, 851, 1019
FriOI	GRGCYC	1 cut(s)	965
FspBI	CTAG	1 cut(s)	291
GsaI	CCCAGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	844
HaeIII	GGCC	2 cut(s)	460, 729
HapII	CCGG	3 cut(s)	652, 787, 1028
Hin1II	CATG	4 cut(s)	176, 349, 528, 1283
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	7 cut(s)	311, 885, 926, 1078, 1112, 1136, 1175
HpaI	GTTAAC	1 cut(s)	358
HpaII	CCGG	3 cut(s)	652, 787, 1028
HphI	GGTGA	3 cut(s)	637, 928, 1271
Hpy166II	GTNNAC	2 cut(s)	358, 628
Hpy188I	TCNGA	5 cut(s)	316, 378, 682, 804, 890
Hpy188III	TCNNGA	9 cut(s)	86, 259, 272, 308, 652, 1028, 1046, 1222, 1280
Hpy8I	GTNNAC	2 cut(s)	358, 628
Hpy99I	CGWCG	1 cut(s)	775
HpyAV	CCTTC	6 cut(s)	34, 625, 799, 882, 944, 1121
HpyCH4III	ACNGT	3 cut(s)	194, 437, 597
HpyCH4IV	ACGT	1 cut(s)	773
HpyCH4V	TGCA	8 cut(s)	95, 470, 489, 540, 600, 759, 1022, 1183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	1208
HpySE526I	ACGT	1 cut(s)	773
Hsp92II	CATG	4 cut(s)	176, 349, 528, 1283
Kpn2I	TCCGGA	2 cut(s)	651, 1027
Ksp22I	TGATCA	2 cut(s)	511, 799
KspAI	GTTAAC	1 cut(s)	358
Kzo9I	GATC	4 cut(s)	274, 511, 799, 890
LguI	GCTCTTC	1 cut(s)	1083
LmnI	GCTCC	1 cut(s)	1244
LweI	GCATC	3 cut(s)	104, 479, 873
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	773
MaeIII	GTNAC	3 cut(s)	331, 413, 551
MalI	GATC	4 cut(s)	276, 513, 801, 892
MboI	GATC	4 cut(s)	274, 511, 799, 890
MboII	GAAGA	3 cut(s)	375, 1087, 1100
MfeI	CAATTG	2 cut(s)	493, 1248
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	965
MlyI	GAGTC	1 cut(s)	1106
MmeI	TCCRAC	1 cut(s)	193
MroI	TCCGGA	2 cut(s)	651, 1027
MseI	TTAA	8 cut(s)	162, 180, 212, 245, 327, 357, 408, 569
MslI	CAYNNNNRTG	3 cut(s)	605, 623, 1144
MspA1I	CMGCKG	1 cut(s)	505
MspI	CCGG	3 cut(s)	652, 787, 1028
MspR9I	CCNGG	1 cut(s)	279
MunI	CAATTG	2 cut(s)	493, 1248
MvaI	CCWGG	1 cut(s)	279
MvnI	CGCG	1 cut(s)	388
MwoI	GCNNNNNNNGC	1 cut(s)	131
NcoI	CCATGG	2 cut(s)	345, 524
NdeII	GATC	4 cut(s)	274, 511, 799, 890
NlaIII	CATG	4 cut(s)	176, 349, 528, 1283
NmuCI	GTSAC	1 cut(s)	413
NspI	RCATGY	1 cut(s)	176
OliI	CACNNNNGTG	1 cut(s)	623
PagI	TCATGA	1 cut(s)	1279
PciI	ACATGT	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	1083
PcsI	WCGNNNNNNNCGW	2 cut(s)	463, 556
PfeI	GAWTC	6 cut(s)	311, 885, 926, 1078, 1136, 1175
PflMI	CCANNNNNTGG	3 cut(s)	351, 530, 944
PleI	GAGTC	1 cut(s)	1106
PpsI	GAGTC	1 cut(s)	1106
PscI	ACATGT	1 cut(s)	172
PshBI	ATTAAT	2 cut(s)	212, 408
PsiI	TTATAA	1 cut(s)	1291
Psp124BI	GAGCTC	1 cut(s)	965
Psp6I	CCWGG	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	2 cut(s)	434, 1228
RsaNI	GTAC	2 cut(s)	433, 1227
RseI	CAYNNNNRTG	3 cut(s)	605, 623, 1144
SacI	GAGCTC	1 cut(s)	965
SapI	GCTCTTC	1 cut(s)	1083
SaqAI	TTAA	8 cut(s)	162, 180, 212, 245, 327, 357, 408, 569
Sau3AI	GATC	4 cut(s)	274, 511, 799, 890
Sau96I	GGNCC	1 cut(s)	83
ScaI	AGTACT	2 cut(s)	434, 1228
SchI	GAGTC	1 cut(s)	1106
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	965
SfaNI	GCATC	3 cut(s)	104, 479, 873
SinI	GGWCC	1 cut(s)	83
SmiMI	CAYNNNNRTG	3 cut(s)	605, 623, 1144
SsiI	CCGC	3 cut(s)	386, 505, 1004
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	1 cut(s)	291
SstI	GAGCTC	1 cut(s)	965
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	3 cut(s)	345, 524, 1236
TaaI	ACNGT	3 cut(s)	194, 437, 597
TaiI	ACGT	1 cut(s)	776
TaqI	TCGA	2 cut(s)	271, 559
TatI	WGTACW	2 cut(s)	432, 1226
TfiI	GAWTC	6 cut(s)	311, 885, 926, 1078, 1136, 1175
Tru1I	TTAA	8 cut(s)	162, 180, 212, 245, 327, 357, 408, 569
Tru9I	TTAA	8 cut(s)	162, 180, 212, 245, 327, 357, 408, 569
TscAI	CASTG	2 cut(s)	542, 882
TseFI	GTSAC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	7 cut(s)	333, 565, 694, 886, 924, 1179, 1218
TspGWI	ACGGA	2 cut(s)	375, 919
TspRI	CASTG	2 cut(s)	542, 882
Van91I	CCANNNNNTGG	3 cut(s)	351, 530, 944
VpaK11BI	GGWCC	1 cut(s)	83
VspI	ATTAAT	2 cut(s)	212, 408
XapI	RAATTY	4 cut(s)	295, 546, 849, 1049
XceI	RCATGY	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	348
XspI	CTAG	1 cut(s)	291
ZrmI	AGTACT	2 cut(s)	434, 1228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.