Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010662

Physical Location & Seq

Genomic Coordinates Reverse (-)

21134834 .. 21140095

Gene Structure 5262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGCACGCGATAAACCCAAGAGGCTCTACCAAGTTTGGAAGGGAAGCAATAACTTTTTCTTTGGGGGGAGATTAGTTTTTGGTCCTGATGTTGCATCTCTTACTCTGTCTGTGCTTCTTATTGCTGTCCCAGCAATGGCATTTTGTATAAAGGTTTATGCTAAACTCCAACATGTAAGTGACGTAACCAAGACGGAGGACAGTATTTGGTATCCTGTATTAATTGTTGCCTCATTGCTCACTGTTTTGGATTTAGCATTTTTGTTCTTGACATCTGGGCGGGATCCTGGGATAATCCCCAGAAATTCAAATCCTCCTGAATCAGATGAAGCATTTGATGTAGCTACCCCATCCATGGAATGGGTTAATGGGAGAACTCCTCATCTGAAACTACCACGAACAAAAGATGTCATTGTTAATGGTCACTCGGTAAAAGTGAAGTACTGTGATACTTGTTTGCTTTATCGGCCTCCCCGTGCATCTCATTGTTCTATCTGTAACAATTGTGTTCAGAGGTTTGATCATCATTGTCCATGGGTTGGTCAGTGCATTGGAATTCGTAACTATCGTTTTTTCTTCTTGTTCATATCAACATCAACCATACTGTGCATATATGTGTTCTCCTTCACTTGGGTGAACCTTAATGAGAAGAAGAATATTTGGACAGCTATGTCAAAAGATATTCTATCAGATCTCCTTTTAGTTTACTGCTTCATTGCTGTCTGGTTTGTGGGTGGCCTTACAATTTTCCATTCCTACTTGATATGCACCAACCAGACGACGTATGAGAACTTCCGGTATCGTTACGATAAAAAGGAGAACCCATATAACAAAGGAGTGATTTGGAACTTCATAGAAACTTTTCTCTCCAGAGTTCCTCCATCAGTGATTAGATTCCGATCATTCATTGCGACAGATGAACAGGGAATTGTTGAATCCGTAACCCCAAATCTTGGTGAAGGTATTATGAGCTCAAAAGAGAAACTTGATGTTGAAATGGGAAGTGGGATAGTGGATGACAATGGCTTTGCTATTCCAGATATATCGCAAAATGTTGAATTTGTTGATTATGAGGAAGATTTGAAGAATATAGGGGAAGAGCAACAACCTGCTTCGTTTGATTCTTTTCAACCAGAAGCAAAAGAATCAACGAAAGACTCGATAAATAGAGATGAAAGTACAGAATCTGTGCATAGCTATACTATATGGAATGAACTAAGAGAATCTACCAGGAGTACTATTTCATTGGATGGAGCGATTGAGAGAGGTGATTGTGAAAACAGATGTCATAAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005886 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030154 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035618 GO:0040007 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0099402 GO:0120025 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04391 map04391

Pfam Domains

Protein Families

DHHC

Protein Analysis

433

Amino Acids

49.25

Weight (kDa)

5.68

Isoelectric Point (pI)

31.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	146 - 266	5.5e-36	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56930 AT3G56930
fragaria_vesca	FvH4_1g28800 FvH4_1g28800 FvH4_1g28800
malus_domestica	MD00G1107600.v1.1 MD14G1100600.v1.1
prunus_persica	Prupe.7G022600_v2.0.a1
pyrus_communis	pycom12g09230 pycom14g08900
rosa_chinensis	RchiOBHm_Chr3g0493221
rosa_laevigata	RLG00000022721
rosa_multiflora	Rmu_sc0003406.1_g000006
rosa_roxburghii	Rroxscaffold_6G00391740
rosa_rugosa	Rorug03G0259900
rosa_samantha	Rh3AG308800 Rh3BG344800 Rh3CG342000 Rh3DG344100
rosa_wichuraiana	Rw3G027150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	670
Acc36I	ACCTGC	1 cut(s)	1117
AccB7I	CCANNNNNTGG	3 cut(s)	360, 539, 953
AccII	CGCG	1 cut(s)	9
AciI	CCGC	1 cut(s)	280
AclWI	GGATC	2 cut(s)	278, 291
AcsI	RAATTY	3 cut(s)	304, 555, 1058
AfaI	GTAC	3 cut(s)	443, 1180, 1237
AfiI	CCNNNNNNNGG	6 cut(s)	136, 355, 360, 539, 630, 953
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	6 cut(s)	309, 935, 995, 1058, 1084, 1130
AjnI	CCWGG	2 cut(s)	286, 1229
AleI	CACNNNNGTG	1 cut(s)	632
AluBI	AGCT	4 cut(s)	344, 668, 972, 1197
AluI	AGCT	4 cut(s)	344, 668, 972, 1197
Alw21I	GWGCWC	1 cut(s)	974
AlwI	GGATC	2 cut(s)	278, 291
AlwNI	CAGNNNCTG	1 cut(s)	1187
AoxI	GGCC	2 cut(s)	467, 736
ApoI	RAATTY	3 cut(s)	304, 555, 1058
ArsI	GACNNNNNNTTYG	2 cut(s)	1010, 1042
AseI	ATTAAT	1 cut(s)	221
Asp700I	GAANNNNTTC	1 cut(s)	861
AspS9I	GGNCC	1 cut(s)	83
AsuHPI	GGTGA	3 cut(s)	646, 968, 1280
AvaII	GGWCC	1 cut(s)	83
BamHI	GGATCC	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	974
BarI	GAAGNNNNNNTAC	2 cut(s)	776, 808
Bbv12I	GWGCWC	1 cut(s)	974
BccI	CCATC	3 cut(s)	358, 889, 1244
BciT130I	CCWGG	2 cut(s)	288, 1231
BciVI	GTATCC	1 cut(s)	222
BclI	TGATCA	1 cut(s)	520
BfuAI	ACCTGC	1 cut(s)	1117
BfuI	GTATCC	1 cut(s)	222
BglII	AGATCT	1 cut(s)	691
BmcAI	AGTACT	2 cut(s)	443, 1237
Bme1390I	CCNGG	2 cut(s)	288, 1231
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	2 cut(s)	288, 1231
BmsI	GCATC	2 cut(s)	104, 488
BplI	GAGNNNNNCTC	2 cut(s)	364, 396
BpmI	CTGGAG	1 cut(s)	853
BsaBI	GATNNNNATC	1 cut(s)	898
BsaJI	CCNNGG	3 cut(s)	287, 354, 533
BsaWI	WCCGGW	1 cut(s)	795
Bsc4I	CCNNNNNNNGG	6 cut(s)	136, 355, 360, 539, 630, 953
Bse3DI	GCAATG	4 cut(s)	141, 233, 714, 906
Bse8I	GATNNNNATC	1 cut(s)	898
BseBI	CCWGG	2 cut(s)	288, 1231
BseDI	CCNNGG	3 cut(s)	287, 354, 533
BseGI	GGATG	3 cut(s)	350, 1021, 1255
BseJI	GATNNNNATC	1 cut(s)	898
BseLI	CCNNNNNNNGG	6 cut(s)	136, 355, 360, 539, 630, 953
BseMI	GCAATG	4 cut(s)	141, 233, 714, 906
BseRI	GAGGAG	1 cut(s)	369
BseYI	CCCAGC	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	469, 738
BsiHKAI	GWGCWC	1 cut(s)	974
BsiSI	CCGG	1 cut(s)	796
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	6 cut(s)	136, 355, 360, 539, 630, 953
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	469, 738
Bsp1286I	GDGCHC	1 cut(s)	974
Bsp143I	GATC	4 cut(s)	283, 520, 691, 899
Bsp19I	CCATGG	2 cut(s)	354, 533
BspACI	CCGC	1 cut(s)	280
BspANI	GGCC	2 cut(s)	469, 738
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	285
BspMI	ACCTGC	1 cut(s)	1117
BspPI	GGATC	2 cut(s)	278, 291
BspQI	GCTCTTC	1 cut(s)	1092
BsrDI	GCAATG	4 cut(s)	141, 233, 714, 906
BssECI	CCNNGG	3 cut(s)	287, 354, 533
BssMI	GATC	4 cut(s)	283, 520, 691, 899
BssT1I	CCWWGG	2 cut(s)	354, 533
Bst2UI	CCWGG	2 cut(s)	288, 1231
Bst4CI	ACNGT	4 cut(s)	203, 244, 446, 606
Bst6I	CTCTTC	1 cut(s)	1092
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	1217
BstDSI	CCRYGG	2 cut(s)	354, 533
BstF5I	GGATG	3 cut(s)	350, 1021, 1255
BstFNI	CGCG	1 cut(s)	9
BstKTI	GATC	4 cut(s)	286, 523, 694, 902
BstMBI	GATC	4 cut(s)	283, 520, 691, 899
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 466
BstNI	CCWGG	2 cut(s)	288, 1231
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	286, 1229
BstUI	CGCG	1 cut(s)	9
BstX2I	RGATCY	2 cut(s)	283, 691
BstYI	RGATCY	2 cut(s)	283, 691
BsuI	GTATCC	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	469, 738
BtgI	CCRYGG	2 cut(s)	354, 533
BtsCI	GGATG	3 cut(s)	350, 1021, 1255
BtsIMutI	CAGTG	3 cut(s)	240, 551, 891
BveI	ACCTGC	1 cut(s)	1117
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	1187
Cfr13I	GGNCC	1 cut(s)	83
Csp6I	GTAC	3 cut(s)	442, 1179, 1236
CviAII	CATG	3 cut(s)	173, 355, 534
CviJI	RGCY	8 cut(s)	25, 344, 469, 668, 738, 972, 1026, 1197
CviKI_1	RGCY	8 cut(s)	25, 344, 469, 668, 738, 972, 1026, 1197
CviQI	GTAC	3 cut(s)	442, 1179, 1236
DdeI	CTNAG	1 cut(s)	1217
DpnI	GATC	4 cut(s)	285, 522, 693, 901
DpnII	GATC	4 cut(s)	283, 520, 691, 899
DrdI	GACNNNNNNGTC	1 cut(s)	670
DseDI	GACNNNNNNGTC	1 cut(s)	670
Eam1104I	CTCTTC	1 cut(s)	1092
EarI	CTCTTC	1 cut(s)	1092
Ecl136II	GAGCTC	1 cut(s)	972
Eco130I	CCWWGG	2 cut(s)	354, 533
Eco24I	GRGCYC	1 cut(s)	974
Eco47I	GGWCC	1 cut(s)	83
Eco53kI	GAGCTC	1 cut(s)	972
EcoICRI	GAGCTC	1 cut(s)	972
EcoRI	GAATTC	1 cut(s)	555
EcoRII	CCWGG	2 cut(s)	286, 1229
EcoT14I	CCWWGG	2 cut(s)	354, 533
EcoT38I	GRGCYC	1 cut(s)	974
ErhI	CCWWGG	2 cut(s)	354, 533
FaeI	CATG	3 cut(s)	176, 358, 537
FalI	AAGNNNNNCTT	2 cut(s)	969, 1001
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	3 cut(s)	172, 354, 533
FauI	CCCGC	1 cut(s)	273
FbaI	TGATCA	1 cut(s)	520
FokI	GGATG	3 cut(s)	337, 1028, 1262
FriOI	GRGCYC	1 cut(s)	974
GsaI	CCCAGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	853
HaeIII	GGCC	2 cut(s)	469, 738
HapII	CCGG	1 cut(s)	796
Hin1II	CATG	3 cut(s)	176, 358, 537
HinfI	GANTC	8 cut(s)	320, 894, 935, 1121, 1145, 1157, 1184, 1223
HpaII	CCGG	1 cut(s)	796
HphI	GGTGA	3 cut(s)	646, 968, 1280
Hpy166II	GTNNAC	2 cut(s)	637, 706
Hpy188I	TCNGA	5 cut(s)	325, 387, 513, 691, 899
Hpy188III	TCNNGA	5 cut(s)	86, 268, 317, 870, 1037
Hpy8I	GTNNAC	2 cut(s)	637, 706
Hpy99I	CGWCG	1 cut(s)	784
HpyAV	CCTTC	3 cut(s)	34, 634, 953
HpyCH4III	ACNGT	4 cut(s)	203, 244, 446, 606
HpyCH4IV	ACGT	2 cut(s)	183, 782
HpyCH4V	TGCA	6 cut(s)	95, 479, 549, 609, 768, 1192
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 466
HpyF3I	CTNAG	1 cut(s)	1217
HpySE526I	ACGT	2 cut(s)	183, 782
Hsp92II	CATG	3 cut(s)	176, 358, 537
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	4 cut(s)	283, 520, 691, 899
LguI	GCTCTTC	1 cut(s)	1092
LmnI	GCTCC	1 cut(s)	1253
LweI	GCATC	2 cut(s)	104, 488
MaeII	ACGT	2 cut(s)	183, 782
MaeIII	GTNAC	7 cut(s)	179, 184, 422, 497, 560, 803, 940
MalI	GATC	4 cut(s)	285, 522, 693, 901
MboI	GATC	4 cut(s)	283, 520, 691, 899
MboII	GAAGA	6 cut(s)	568, 661, 664, 1088, 1096, 1109
MfeI	CAATTG	1 cut(s)	502
MflI	RGATCY	2 cut(s)	283, 691
MhlI	GDGCHC	1 cut(s)	974
MluCI	AATT	7 cut(s)	222, 304, 502, 555, 744, 927, 1058
MlyI	GAGTC	1 cut(s)	1151
MmeI	TCCRAC	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	861
MseI	TTAA	4 cut(s)	221, 366, 417, 642
MslI	CAYNNNNRTG	3 cut(s)	177, 614, 632
MspI	CCGG	1 cut(s)	796
MspR9I	CCNGG	2 cut(s)	288, 1231
MunI	CAATTG	1 cut(s)	502
MvaI	CCWGG	2 cut(s)	288, 1231
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	131, 466
NcoI	CCATGG	2 cut(s)	354, 533
NdeII	GATC	4 cut(s)	283, 520, 691, 899
NlaIII	CATG	3 cut(s)	176, 358, 537
NlaIV	GGNNCC	1 cut(s)	285
NmuCI	GTSAC	2 cut(s)	179, 422
NspI	RCATGY	1 cut(s)	176
OliI	CACNNNNGTG	1 cut(s)	632
PciI	ACATGT	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	1092
PcsI	WCGNNNNNNNCGW	3 cut(s)	472, 565, 1157
PdmI	GAANNNNTTC	1 cut(s)	861
PfeI	GAWTC	7 cut(s)	320, 894, 935, 1121, 1145, 1184, 1223
PflMI	CCANNNNNTGG	3 cut(s)	360, 539, 953
PleI	GAGTC	1 cut(s)	1151
PpsI	GAGTC	1 cut(s)	1151
PscI	ACATGT	1 cut(s)	172
PshBI	ATTAAT	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	974
Psp6I	CCWGG	2 cut(s)	286, 1229
PspFI	CCCAGC	1 cut(s)	130
PspGI	CCWGG	2 cut(s)	286, 1229
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	83
PstNI	CAGNNNCTG	1 cut(s)	1187
PsuI	RGATCY	2 cut(s)	283, 691
RsaI	GTAC	3 cut(s)	443, 1180, 1237
RsaNI	GTAC	3 cut(s)	442, 1179, 1236
RseI	CAYNNNNRTG	3 cut(s)	177, 614, 632
SacI	GAGCTC	1 cut(s)	974
SapI	GCTCTTC	1 cut(s)	1092
SaqAI	TTAA	4 cut(s)	221, 366, 417, 642
Sau3AI	GATC	4 cut(s)	283, 520, 691, 899
Sau96I	GGNCC	1 cut(s)	83
ScaI	AGTACT	2 cut(s)	443, 1237
SchI	GAGTC	1 cut(s)	1151
ScrFI	CCNGG	2 cut(s)	288, 1231
SduI	GDGCHC	1 cut(s)	974
SfaNI	GCATC	2 cut(s)	104, 488
SinI	GGWCC	1 cut(s)	83
SmiMI	CAYNNNNRTG	3 cut(s)	177, 614, 632
Sse9I	AATT	7 cut(s)	222, 304, 502, 555, 744, 927, 1058
SsiI	CCGC	1 cut(s)	280
SspI	AATATT	1 cut(s)	658
SstI	GAGCTC	1 cut(s)	974
StyD4I	CCNGG	2 cut(s)	286, 1229
StyI	CCWWGG	2 cut(s)	354, 533
TaaI	ACNGT	4 cut(s)	203, 244, 446, 606
TaiI	ACGT	2 cut(s)	186, 785
TaqI	TCGA	1 cut(s)	1160
TasI	AATT	7 cut(s)	222, 304, 502, 555, 744, 927, 1058
TatI	WGTACW	3 cut(s)	441, 1178, 1235
TfiI	GAWTC	7 cut(s)	320, 894, 935, 1121, 1145, 1184, 1223
Tru1I	TTAA	4 cut(s)	221, 366, 417, 642
Tru9I	TTAA	4 cut(s)	221, 366, 417, 642
TscAI	CASTG	3 cut(s)	247, 551, 891
TseFI	GTSAC	2 cut(s)	179, 422
Tsp45I	GTSAC	2 cut(s)	179, 422
TspDTI	ATGAA	9 cut(s)	342, 574, 703, 841, 895, 933, 1188, 1227, 1233
TspGWI	ACGGA	2 cut(s)	209, 928
TspRI	CASTG	3 cut(s)	247, 551, 891
Van91I	CCANNNNNTGG	3 cut(s)	360, 539, 953
VpaK11BI	GGWCC	1 cut(s)	83
VspI	ATTAAT	1 cut(s)	221
XapI	RAATTY	3 cut(s)	304, 555, 1058
XceI	RCATGY	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	357
XmnI	GAANNNNTTC	1 cut(s)	861
ZrmI	AGTACT	2 cut(s)	443, 1237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.