Rorug03G0259900

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0010662
Physical Location & Seq
Forward (+)
24984234 .. 24984803
570 bp
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UTR
Exon/CDS
Intron
Rorug03G0259900.1

Sequence Viewer

Length: 570 bp
ATGGGCAACTTGATCAGCCTCAGATTGCTTATGATGACGACGAAAGAAGCATGTTTTCAAGACAATGGAGTGGGATGTTTGAAATCACTTCGGTTGCTCGCGATTGTAAATTGTGGTAATTTAATCTCTTTGCCCCGCGAGATGAATTATCTCTCTGCATTGCGGACTTTGATATTAGCTGATTGTGAGCAACTCGATCTGGTGACCCAACATTATAAAGCAATTCCATTGAGGCTCGAAAAGTTGGCTATTGATGGACTACCACGGATCACGGAGTTGCCTGAATGGTTTCGAGGAGCTGCCAACACCCTACAGTACTTGTGGATTGAAGATTGTTCCAATTTGGGTTCATTACCAGGGTGGCTCACAGATCTAACATCACTTAAAAAGCTTGTCCTCCAGAGTTGCCCCACATTGTTGTCACTTCCAGAAGGGATGGATCGTCTCACTACCTTGAGAGGCTTGAAGATACGATGGTGTCCTGAGTTGCAGAGAAGATGCGAACGTGACACTGGTGAAGATTGGCCAAAGATTGCTCGTATTCCAAACATTTATATTTCAAACTGGTGA

Protein Analysis

189

Amino Acids

21.54

Weight (kDa)

8.12

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 7 - 184 1.3e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010662)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56930 AT3G56930
fragaria_vesca FvH4_1g28800 FvH4_1g28800 FvH4_1g28800
malus_domestica MD00G1107600.v1.1 MD14G1100600.v1.1
prunus_persica Prupe.7G022600_v2.0.a1
pyrus_communis pycom12g09230 pycom14g08900
rosa_chinensis RchiOBHm_Chr3g0493221
rosa_laevigata RLG00000022721
rosa_multiflora Rmu_sc0003406.1_g000006
rosa_roxburghii Rroxscaffold_6G00391740
rosa_rugosa Rorug03G0259900
rosa_samantha Rh3AG308800 Rh3BG344800 Rh3CG342000 Rh3DG344100
rosa_wichuraiana Rw3G027150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AccII CGCG 2 cut(s) 101, 138
AciI CCGC 2 cut(s) 136, 163
AclWI GGATC 2 cut(s) 275, 447
AcoI YGGCCR 1 cut(s) 524
AfaI GTAC 1 cut(s) 317
AgsI TTSAA 5 cut(s) 59, 82, 329, 466, 561
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 3 cut(s) 179, 299, 391
AluI AGCT 3 cut(s) 179, 299, 391
Alw26I GTCTC 1 cut(s) 449
AlwI GGATC 2 cut(s) 275, 447
AoxI GGCC 1 cut(s) 524
ApeKI GCWGC 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 288
AsuHPI GGTGA 2 cut(s) 214, 527
BaeI ACNNNNGTAYC 2 cut(s) 461, 494
BalI TGGCCA 1 cut(s) 526
BbvI GCAGC 1 cut(s) 286
BccI CCATC 3 cut(s) 248, 430, 468
BciT130I CCWGG 1 cut(s) 357
BclI TGATCA 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 449
BfmI CTRYAG 1 cut(s) 311
BglII AGATCT 1 cut(s) 370
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
BmcAI AGTACT 1 cut(s) 317
Bme1390I CCNGG 1 cut(s) 357
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 1 cut(s) 488
BpmI CTGGAG 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 475
BsaJI CCNNGG 2 cut(s) 263, 356
Bse1I ACTGG 2 cut(s) 517, 569
Bse3DI GCAATG 1 cut(s) 158
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 263, 356
BseGI GGATG 2 cut(s) 80, 441
BseMI GCAATG 1 cut(s) 158
BseMII CTCAG 2 cut(s) 34, 474
BseNI ACTGG 2 cut(s) 517, 569
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 1 cut(s) 286
Bsh1236I CGCG 2 cut(s) 101, 138
BshFI GGCC 1 cut(s) 526
BsmAI GTCTC 1 cut(s) 449
BsmBI CGTCTC 1 cut(s) 449
BsnI GGCC 1 cut(s) 526
Bsp143I GATC 5 cut(s) 12, 196, 267, 370, 439
Bsp68I TCGCGA 1 cut(s) 101
BspACI CCGC 2 cut(s) 136, 163
BspANI GGCC 1 cut(s) 526
BspCNI CTCAG 2 cut(s) 33, 475
BspFNI CGCG 2 cut(s) 101, 138
BspPI GGATC 2 cut(s) 275, 447
BsrDI GCAATG 1 cut(s) 158
BsrI ACTGG 2 cut(s) 517, 569
BssECI CCNNGG 2 cut(s) 263, 356
BssMI GATC 5 cut(s) 12, 196, 267, 370, 439
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 20, 483
BstDSI CCRYGG 1 cut(s) 263
BstEII GGTNACC 1 cut(s) 202
BstF5I GGATG 2 cut(s) 80, 441
BstFNI CGCG 2 cut(s) 101, 138
BstKTI GATC 5 cut(s) 15, 199, 270, 373, 442
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 5 cut(s) 12, 196, 267, 370, 439
BstNI CCWGG 1 cut(s) 357
BstNSI RCATGY 1 cut(s) 54
BstPI GGTNACC 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 311
BstUI CGCG 2 cut(s) 101, 138
BstV1I GCAGC 1 cut(s) 286
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuRI GGCC 1 cut(s) 526
BtgI CCRYGG 1 cut(s) 263
BtsCI GGATG 2 cut(s) 80, 441
BtsIMutI CAGTG 1 cut(s) 510
BtuMI TCGCGA 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 316
CviAII CATG 1 cut(s) 51
CviJI RGCY 9 cut(s) 18, 179, 235, 248, 299, 364, 391, 462, 526
CviKI_1 RGCY 9 cut(s) 18, 179, 235, 248, 299, 364, 391, 462, 526
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 2 cut(s) 20, 483
DpnI GATC 5 cut(s) 14, 198, 269, 372, 441
DpnII GATC 5 cut(s) 12, 196, 267, 370, 439
EaeI YGGCCR 1 cut(s) 524
Eco91I GGTNACC 1 cut(s) 202
EcoO65I GGTNACC 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 355
Esp3I CGTCTC 1 cut(s) 449
FaeI CATG 1 cut(s) 54
FaiI YATR 4 cut(s) 32, 52, 216, 555
FatI CATG 1 cut(s) 50
FauI CCCGC 1 cut(s) 143
FbaI TGATCA 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 300
FokI GGATG 2 cut(s) 87, 448
Fsp4HI GCNGC 1 cut(s) 300
GluI GCNGC 1 cut(s) 300
GsuI CTGGAG 1 cut(s) 383
HaeIII GGCC 1 cut(s) 526
Hin1II CATG 1 cut(s) 54
HindIII AAGCTT 1 cut(s) 389
HphI GGTGA 2 cut(s) 214, 527
Hpy188I TCNGA 1 cut(s) 23
Hpy188III TCNNGA 5 cut(s) 59, 100, 400, 428, 482
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 425
HpyCH4III ACNGT 1 cut(s) 315
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 2 cut(s) 158, 490
HpyF3I CTNAG 2 cut(s) 20, 483
HpySE526I ACGT 1 cut(s) 505
Hsp92II CATG 1 cut(s) 54
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 5 cut(s) 12, 196, 267, 370, 439
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 9 cut(s) 185, 294, 342, 369, 413, 441, 495, 498, 550
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 1 cut(s) 488
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 3 cut(s) 202, 420, 506
MalI GATC 5 cut(s) 14, 198, 269, 372, 441
MboI GATC 5 cut(s) 12, 196, 267, 370, 439
MboII GAAGA 4 cut(s) 341, 478, 507, 530
MflI RGATCY 1 cut(s) 370
MlsI TGGCCA 1 cut(s) 526
MluCI AATT 5 cut(s) 109, 118, 145, 222, 340
MluNI TGGCCA 1 cut(s) 526
MnlI CCTC 5 cut(s) 29, 225, 287, 407, 452
Mox20I TGGCCA 1 cut(s) 526
MroXI GAANNNNTTC 1 cut(s) 288
MscI TGGCCA 1 cut(s) 526
MseI TTAA 2 cut(s) 122, 384
Msp20I TGGCCA 1 cut(s) 526
MspR9I CCNGG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 357
MvnI CGCG 2 cut(s) 101, 138
NdeII GATC 5 cut(s) 12, 196, 267, 370, 439
NlaIII CATG 1 cut(s) 54
NmuCI GTSAC 3 cut(s) 202, 420, 506
NruI TCGCGA 1 cut(s) 101
NspI RCATGY 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 288
PkrI GCNGC 1 cut(s) 301
PsiI TTATAA 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 355
PspEI GGTNACC 1 cut(s) 202
PspGI CCWGG 1 cut(s) 355
PsuI RGATCY 1 cut(s) 370
RruI TCGCGA 1 cut(s) 101
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SaqAI TTAA 2 cut(s) 122, 384
SatI GCNGC 1 cut(s) 300
Sau3AI GATC 5 cut(s) 12, 196, 267, 370, 439
ScaI AGTACT 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 357
SetI ASST 5 cut(s) 181, 301, 393, 455, 508
SfaNI GCATC 1 cut(s) 488
SfcI CTRYAG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 454
SmoI CTYRAG 1 cut(s) 454
Sse9I AATT 5 cut(s) 109, 118, 145, 222, 340
SsiI CCGC 2 cut(s) 136, 163
StyD4I CCNGG 1 cut(s) 355
TaaI ACNGT 1 cut(s) 315
TaiI ACGT 1 cut(s) 508
TaqI TCGA 3 cut(s) 195, 237, 292
TasI AATT 5 cut(s) 109, 118, 145, 222, 340
TatI WGTACW 1 cut(s) 315
Tru1I TTAA 2 cut(s) 122, 384
Tru9I TTAA 2 cut(s) 122, 384
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 3 cut(s) 202, 420, 506
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 3 cut(s) 202, 420, 506
TspDTI ATGAA 2 cut(s) 158, 339
TspGWI ACGGA 2 cut(s) 280, 287
TspRI CASTG 1 cut(s) 517
XceI RCATGY 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 288
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.