AT3G57050

cystathionine beta-lyase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
21111700 .. 21114737
3038 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G57050.1

Sequence Viewer

Length: 1395 bp
ATGACATCTTCTCTGTCACTTCACTCCTCCTTCGTACCTTCCTTCGCTGATCTCTCCGACCGAGGTTTGATCAGTAAGAACTCTCCGACCAGTGTTTCCATTTCCAAGGTTCCAACTTGGGAGAAGAAGCAGATCTCAAATCGGAACTCTTTCAAGCTGAATTGCGTGATGGAGAAAAGTGTCGATGGTCAAACTCATTCTACCGTTAACAATACCACTGATAGCTTAAATACTATGAATATCAAAGAAGAAGCTAGCGTCTCTACATTATTGGTGAACTTGGATAATAAATTTGATCCCTTTGATGCAATGAGCACTCCGCTTTACCAAACTGCTACTTTTAAGCAGCCTTCTGCTATTGAAAATGGACCTTATGATTATACAAGAAGTGGCAATCCTACACGGGATGCATTGGAAAGCCTCCTTGCGAAGCTTGACAAGGCAGATAGAGCATTTTGCTTTACTAGCGGAATGGCTGCTCTTAGTGCTGTTACACATCTTATCAAAAATGGCGAAGAAATTGTTGCTGGAGATGATGTATATGGTGGCTCTGACAGATTACTATCCCAAGTTGTTCCAAGATCTGGCGTTGTGGTAAAACGAGTAAACACAACTAAGTTAGACGAGGTTGCTGCTGCAATTGGTCCCCAAACAAAGCTTGTGTGGCTTGAGTCTCCAACAAACCCAAGACAACAAATTTCTGATATACGAAAAATATCTGAGATGGCTCATGCTCAAGGTGCTCTTGTGTTGGTGGACAACAGTATTATGTCACCAGTGCTCTCTCGGCCATTAGAACTTGGAGCTGACATCGTGATGCACTCGGCTACTAAGTTTATAGCCGGACACAGTGACGTGATGGCAGGTGTGCTTGCTGTAAAAGGCGAAAAATTGGCAAAGGAGGTGTATTTCCTCCAAAACTCAGAAGGTTCTGGATTAGCTCCTTTCGACTGTTGGCTTTGCCTTCGAGGAATCAAGACAATGGCTTTACGGATAGAAAAGCAACAGGAAAACGCACGGAAAATTGCAATGTACTTGTCTTCTCATCCAAGAGTAAAGAAAGTGTACTATGCTGGTCTACCAGATCATCCTGGTCACCATCTCCACTTCTCTCAGGCGAAGGGTGCAGGATCAGTTTTTAGCTTTATAACTGGATCAGTTGCGCTTTCAAAGCATCTCGTAGAAACCACCAAATACTTCAGCATAGCTGTCAGTTTTGGGAGTGTTAAGTCACTGATAAGCATGCCATGCTTCATGTCACATGCAAGCATACCTGCAGAAGTTCGTGAGGCCAGAGGTTTGACGGAAGATCTTGTCCGTATATCTGCAGGAATTGAAGATGTTGATGATTTGATATCTGATCTTGACATTGCCTTCAAAACCTTCCCTCTCTAG

Protein Analysis

464

Amino Acids

50.43

Weight (kDa)

6.9

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cys_Met_Meta_PP PF01053 88 - 460 3.1e-151 Cys/Met metabolism PLP-dependent enzyme
Aminotran_1_2 PF00155 128 - 253 1e-05 Aminotransferase class I and II
Aminotran_5 PF00266 163 - 281 1.8e-06 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1148
AarI CACCTGC 1 cut(s) 854
Acc36I ACCTGC 2 cut(s) 854, 1282
AccB7I CCANNNNNTGG 1 cut(s) 584
AccI GTMKAC 1 cut(s) 1078
AciI CCGC 2 cut(s) 320, 468
AclWI GGATC 3 cut(s) 290, 1138, 1162
AcoI YGGCCR 1 cut(s) 788
AcsI RAATTY 2 cut(s) 290, 696
AcuI CTGAAG 1 cut(s) 1183
AfaI GTAC 3 cut(s) 36, 1034, 1067
AfiI CCNNNNNNNGG 1 cut(s) 584
AgsI TTSAA 5 cut(s) 154, 362, 1170, 1337, 1378
AjiI CACGTC 1 cut(s) 856
AjnI CCWGG 1 cut(s) 1090
AluBI AGCT 9 cut(s) 157, 225, 254, 433, 658, 806, 941, 1143, 1208
AluI AGCT 9 cut(s) 157, 225, 254, 433, 658, 806, 941, 1143, 1208
Alw21I GWGCWC 3 cut(s) 317, 745, 783
Alw26I GTCTC 2 cut(s) 265, 678
AlwI GGATC 3 cut(s) 290, 1138, 1162
AoxI GGCC 2 cut(s) 788, 1290
ApeKI GCWGC 4 cut(s) 346, 476, 632, 635
ApoI RAATTY 2 cut(s) 290, 696
Asp700I GAANNNNTTC 1 cut(s) 149
AspLEI GCGC 1 cut(s) 1165
AspS9I GGNCC 2 cut(s) 368, 644
AsuHPI GGTGA 3 cut(s) 286, 765, 1088
AsuNHI GCTAGC 1 cut(s) 254
AvaII GGWCC 2 cut(s) 368, 644
BbsI GAAGAC 1 cut(s) 1032
Bbv12I GWGCWC 3 cut(s) 317, 745, 783
BbvI GCAGC 4 cut(s) 358, 463, 619, 622
BccI CCATC 5 cut(s) 163, 179, 718, 853, 1107
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BciT130I CCWGG 1 cut(s) 1092
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 265, 678
BfaI CTAG 3 cut(s) 255, 465, 1393
BfmI CTRYAG 2 cut(s) 1275, 1326
BfuAI ACCTGC 2 cut(s) 854, 1282
BglII AGATCT 3 cut(s) 132, 581, 1309
BisI GCNGC 4 cut(s) 347, 477, 633, 636
BlsI GCNGC 4 cut(s) 348, 478, 634, 637
Bme1390I CCNGG 1 cut(s) 1092
Bme18I GGWCC 2 cut(s) 368, 644
BmgBI CACGTC 1 cut(s) 856
BmgT120I GGNCC 2 cut(s) 368, 644
BmiI GGNNCC 2 cut(s) 111, 646
BmrFI CCNGG 1 cut(s) 1092
BmsI GCATC 4 cut(s) 295, 397, 807, 1183
BmtI GCTAGC 1 cut(s) 258
BpiI GAAGAC 1 cut(s) 1032
BpmI CTGGAG 1 cut(s) 549
BpuEI CTTGAG 2 cut(s) 689, 720
BsaBI GATNNNNATC 1 cut(s) 562
BsaJI CCNNGG 2 cut(s) 61, 105
BsaXI ACNNNNNCTCC 2 cut(s) 522, 552
Bsc4I CCNNNNNNNGG 1 cut(s) 584
Bse1I ACTGG 3 cut(s) 90, 776, 1156
Bse3DI GCAATG 3 cut(s) 315, 1035, 1368
Bse8I GATNNNNATC 1 cut(s) 562
BseBI CCWGG 1 cut(s) 1092
BseDI CCNNGG 2 cut(s) 61, 105
BseGI GGATG 3 cut(s) 412, 1045, 1087
BseJI GATNNNNATC 1 cut(s) 562
BseLI CCNNNNNNNGG 1 cut(s) 584
BseMI GCAATG 3 cut(s) 315, 1035, 1368
BseMII CTCAG 3 cut(s) 711, 936, 1127
BseNI ACTGG 3 cut(s) 90, 776, 1156
BseRI GAGGAG 1 cut(s) 16
BseXI GCAGC 4 cut(s) 358, 463, 619, 622
BsgI GTGCAG 1 cut(s) 1146
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 2 cut(s) 790, 1292
BsiEI CGRYCG 1 cut(s) 61
BsiHKAI GWGCWC 3 cut(s) 317, 745, 783
BsiSI CCGG 1 cut(s) 843
BslFI GGGAC 1 cut(s) 630
BslI CCNNNNNNNGG 1 cut(s) 584
BsmAI GTCTC 2 cut(s) 265, 678
BsmBI CGTCTC 1 cut(s) 265
BsmFI GGGAC 1 cut(s) 630
BsnI GGCC 2 cut(s) 790, 1292
Bsp1286I GDGCHC 3 cut(s) 317, 745, 783
BspACI CCGC 2 cut(s) 320, 468
BspANI GGCC 2 cut(s) 790, 1292
BspCNI CTCAG 3 cut(s) 712, 935, 1126
BspLI GGNNCC 2 cut(s) 111, 646
BspMAI CTGCAG 2 cut(s) 1279, 1330
BspMI ACCTGC 2 cut(s) 854, 1282
BspOI GCTAGC 1 cut(s) 258
BspPI GGATC 3 cut(s) 290, 1138, 1162
BsrDI GCAATG 3 cut(s) 315, 1035, 1368
BsrI ACTGG 3 cut(s) 90, 776, 1156
BssECI CCNNGG 2 cut(s) 61, 105
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 1092
Bst4CI ACNGT 4 cut(s) 205, 764, 851, 953
BstAPI GCANNNNNTGC 1 cut(s) 1248
BstC8I GCNNGC 4 cut(s) 256, 873, 1244, 1267
BstDEI CTNAG 6 cut(s) 482, 615, 720, 831, 922, 1113
BstEII GGTNACC 1 cut(s) 1094
BstF5I GGATG 3 cut(s) 412, 1045, 1087
BstHHI GCGC 1 cut(s) 1165
BstMAI GTCTC 2 cut(s) 265, 678
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 9 cut(s) 449, 465, 485, 664, 740, 787, 1124, 1171, 1248
BstNI CCWGG 1 cut(s) 1092
BstNSI RCATGY 2 cut(s) 1246, 1265
BstPI GGTNACC 1 cut(s) 1094
BstSCI CCNGG 1 cut(s) 1090
BstSFI CTRYAG 2 cut(s) 1275, 1326
BstV1I GCAGC 4 cut(s) 358, 463, 619, 622
BstV2I GAAGAC 1 cut(s) 1032
BstX2I RGATCY 3 cut(s) 132, 581, 1309
BstYI RGATCY 3 cut(s) 132, 581, 1309
BsuRI GGCC 2 cut(s) 790, 1292
BtrI CACGTC 1 cut(s) 856
BtsCI GGATG 3 cut(s) 412, 1045, 1087
BtsIMutI CAGTG 5 cut(s) 97, 216, 783, 856, 1232
BveI ACCTGC 2 cut(s) 854, 1282
Cac8I GCNNGC 4 cut(s) 256, 873, 1244, 1267
CfoI GCGC 1 cut(s) 1165
Cfr13I GGNCC 2 cut(s) 368, 644
CseI GACGC 1 cut(s) 247
Csp6I GTAC 3 cut(s) 35, 1033, 1066
CviAII CATG 5 cut(s) 731, 1243, 1248, 1255, 1262
CviQI GTAC 3 cut(s) 35, 1033, 1066
DdeI CTNAG 6 cut(s) 482, 615, 720, 831, 922, 1113
EaeI YGGCCR 1 cut(s) 788
Eco130I CCWWGG 1 cut(s) 105
Eco32I GATATC 1 cut(s) 1356
Eco47I GGWCC 2 cut(s) 368, 644
Eco57I CTGAAG 1 cut(s) 1183
Eco91I GGTNACC 1 cut(s) 1094
EcoO65I GGTNACC 1 cut(s) 1094
EcoRII CCWGG 1 cut(s) 1090
EcoRV GATATC 1 cut(s) 1356
EcoT14I CCWWGG 1 cut(s) 105
EcoT22I ATGCAT 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 265
FaeI CATG 5 cut(s) 734, 1246, 1251, 1258, 1265
FalI AAGNNNNNCTT 2 cut(s) 729, 761
FaqI GGGAC 1 cut(s) 630
FatI CATG 5 cut(s) 730, 1242, 1247, 1254, 1261
FbaI TGATCA 1 cut(s) 69
FblI GTMKAC 1 cut(s) 1078
Fnu4HI GCNGC 4 cut(s) 347, 477, 633, 636
FokI GGATG 3 cut(s) 419, 1032, 1074
Fsp4HI GCNGC 4 cut(s) 347, 477, 633, 636
FspBI CTAG 3 cut(s) 255, 465, 1393
GlaI GCGC 1 cut(s) 1164
GluI GCNGC 4 cut(s) 347, 477, 633, 636
GsuI CTGGAG 1 cut(s) 549
HaeIII GGCC 2 cut(s) 790, 1292
HapII CCGG 1 cut(s) 843
HgaI GACGC 1 cut(s) 247
HhaI GCGC 1 cut(s) 1165
Hin1II CATG 5 cut(s) 734, 1246, 1251, 1258, 1265
Hin6I GCGC 1 cut(s) 1163
HinP1I GCGC 1 cut(s) 1163
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HindIII AAGCTT 2 cut(s) 431, 656
HinfI GANTC 2 cut(s) 671, 972
HpaI GTTAAC 1 cut(s) 208
HpaII CCGG 1 cut(s) 843
HphI GGTGA 3 cut(s) 286, 765, 1088
Hpy166II GTNNAC 6 cut(s) 208, 277, 607, 757, 1066, 1079
Hpy188I TCNGA 8 cut(s) 58, 87, 144, 553, 703, 721, 925, 1360
Hpy188III TCNNGA 5 cut(s) 814, 933, 976, 1286, 1364
Hpy8I GTNNAC 6 cut(s) 208, 277, 607, 757, 1066, 1079
HpyAV CCTTC 9 cut(s) 40, 48, 52, 360, 920, 974, 1114, 1384, 1393
HpyCH4III ACNGT 4 cut(s) 205, 764, 851, 953
HpyCH4IV ACGT 1 cut(s) 855
HpyCH4V TGCA 9 cut(s) 308, 410, 638, 820, 1028, 1127, 1265, 1277, 1328
HpyF10VI GCNNNNNNNGC 9 cut(s) 449, 465, 485, 664, 740, 787, 1124, 1171, 1248
HpyF3I CTNAG 6 cut(s) 482, 615, 720, 831, 922, 1113
HpySE526I ACGT 1 cut(s) 855
Hsp92II CATG 5 cut(s) 734, 1246, 1251, 1258, 1265
HspAI GCGC 1 cut(s) 1163
Ksp22I TGATCA 1 cut(s) 69
KspAI GTTAAC 1 cut(s) 208
LmnI GCTCC 2 cut(s) 803, 946
Lsp1109I GCAGC 4 cut(s) 358, 463, 619, 622
LweI GCATC 4 cut(s) 295, 397, 807, 1183
MaeI CTAG 3 cut(s) 255, 465, 1393
MaeII ACGT 1 cut(s) 855
MaeIII GTNAC 7 cut(s) 15, 490, 771, 851, 1094, 1230, 1257
MboII GAAGA 6 cut(s) 136, 260, 527, 1032, 1319, 1349
MfeI CAATTG 1 cut(s) 639
MflI RGATCY 3 cut(s) 132, 581, 1309
MhlI GDGCHC 3 cut(s) 317, 745, 783
MluCI AATT 8 cut(s) 160, 290, 519, 639, 696, 890, 1023, 1332
MlyI GAGTC 1 cut(s) 680
MmeI TCCRAC 4 cut(s) 81, 110, 137, 701
MnlI CCTC 9 cut(s) 37, 56, 431, 619, 895, 923, 962, 1282, 1289
Mph1103I ATGCAT 1 cut(s) 412
MroXI GAANNNNTTC 1 cut(s) 149
MseI TTAA 4 cut(s) 207, 227, 342, 1227
MslI CAYNNNNRTG 1 cut(s) 815
MspI CCGG 1 cut(s) 843
MspR9I CCNGG 1 cut(s) 1092
MunI CAATTG 1 cut(s) 639
MvaI CCWGG 1 cut(s) 1092
MwoI GCNNNNNNNGC 9 cut(s) 449, 465, 485, 664, 740, 787, 1124, 1171, 1248
NheI GCTAGC 1 cut(s) 254
NlaIII CATG 5 cut(s) 734, 1246, 1251, 1258, 1265
NlaIV GGNNCC 2 cut(s) 111, 646
NmeAIII GCCGAG 2 cut(s) 766, 803
NmuCI GTSAC 6 cut(s) 15, 771, 851, 1094, 1230, 1257
NsiI ATGCAT 1 cut(s) 412
NspI RCATGY 2 cut(s) 1246, 1265
PaeI GCATGC 1 cut(s) 1246
PaqCI CACCTGC 1 cut(s) 854
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 972
PflMI CCANNNNNTGG 1 cut(s) 584
PkrI GCNGC 4 cut(s) 348, 478, 634, 637
PleI GAGTC 1 cut(s) 679
PpsI GAGTC 1 cut(s) 679
PsiI TTATAA 1 cut(s) 1148
Psp6I CCWGG 1 cut(s) 1090
PspEI GGTNACC 1 cut(s) 1094
PspGI CCWGG 1 cut(s) 1090
PspN4I GGNNCC 2 cut(s) 111, 646
PspPI GGNCC 2 cut(s) 368, 644
PstI CTGCAG 2 cut(s) 1279, 1330
PsuI RGATCY 3 cut(s) 132, 581, 1309
RsaI GTAC 3 cut(s) 36, 1034, 1067
RsaNI GTAC 3 cut(s) 35, 1033, 1066
RseI CAYNNNNRTG 1 cut(s) 815
SaqAI TTAA 4 cut(s) 207, 227, 342, 1227
SatI GCNGC 4 cut(s) 347, 477, 633, 636
Sau96I GGNCC 2 cut(s) 368, 644
SchI GAGTC 1 cut(s) 680
ScrFI CCNGG 1 cut(s) 1092
SduI GDGCHC 3 cut(s) 317, 745, 783
SfaNI GCATC 4 cut(s) 295, 397, 807, 1183
SfcI CTRYAG 2 cut(s) 1275, 1326
SinI GGWCC 2 cut(s) 368, 644
SmiMI CAYNNNNRTG 1 cut(s) 815
SmlI CTYRAG 2 cut(s) 668, 735
SmoI CTYRAG 2 cut(s) 668, 735
SphI GCATGC 1 cut(s) 1246
Sse9I AATT 8 cut(s) 160, 290, 519, 639, 696, 890, 1023, 1332
SsiI CCGC 2 cut(s) 320, 468
SspMI CTAG 3 cut(s) 255, 465, 1393
StyD4I CCNGG 1 cut(s) 1090
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 4 cut(s) 205, 764, 851, 953
TaiI ACGT 1 cut(s) 858
TaqI TCGA 3 cut(s) 183, 948, 967
TaqII GACCGA 1 cut(s) 75
TasI AATT 8 cut(s) 160, 290, 519, 639, 696, 890, 1023, 1332
TatI WGTACW 2 cut(s) 1032, 1065
TfiI GAWTC 1 cut(s) 972
Tru1I TTAA 4 cut(s) 207, 227, 342, 1227
Tru9I TTAA 4 cut(s) 207, 227, 342, 1227
TscAI CASTG 5 cut(s) 97, 223, 783, 856, 1239
TseFI GTSAC 6 cut(s) 15, 771, 851, 1094, 1230, 1257
TseI GCWGC 4 cut(s) 346, 476, 632, 635
Tsp45I GTSAC 6 cut(s) 15, 771, 851, 1094, 1230, 1257
TspDTI ATGAA 2 cut(s) 251, 1243
TspGWI ACGGA 4 cut(s) 1006, 1033, 1307, 1319
TspRI CASTG 5 cut(s) 97, 223, 783, 856, 1239
Van91I CCANNNNNTGG 1 cut(s) 584
VpaK11BI GGWCC 2 cut(s) 368, 644
XapI RAATTY 2 cut(s) 290, 696
XceI RCATGY 2 cut(s) 1246, 1265
XmiI GTMKAC 1 cut(s) 1078
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 3 cut(s) 255, 465, 1393
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.