Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006334

Physical Location & Seq

Genomic Coordinates Reverse (-)

49323496 .. 49330678

Gene Structure 7183 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00118120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGGCGGCGGCTTCTTCTTCTCTCTGTCTTCGGCCTAGTTCTCTCGCCATTGATCTCAACGACGTTGGTTCAACTCCTGGCAAGTTTGTGGCAAGTTTTGGGAGTCCTAAGGTGCGTTTGGGGCTCAAAAAGACATTCAAAGTGAACTGTTCGATAGACAGAGAGATGGATGTGAGCACTTCAGCTATGGTTGATGGCGTGGCTGACTGCTTGAATGAGATGGAGCTAAAAGAGCCAAGTATGTCGACAATGCTGATGAATTTCGACAACAAGTTTGATCCTTACGATGCAATGAATACGCCACTCTACCAAACAGCTACTTTTAAGCAGGAAGAAGCTAGTGGTTCAGTCAAGCCTTCTGCTACAGAAAATGGTCCTTACGATTATACTAGAAGCGGAAATCCTACACGAGATGCCTTAGAAAGCATTTTGGCAAAGCTTGATAAGGCAGATCGAGCACTTTGTTTCACTAGTGGAATGGCTGCTTTGGCTGCTGTTGCTCATCTTGTAGGAACAGATGGGGCCGTCCCTTATTCCCTTCTACGGGCTGATTTAGGCTTAGGAGAGGAGATTGTTGCTGGAGATGACCTGTATGGGGGTTCTGACCGATTGTTGTCCCAAGTGATTCCAAAAACTGGAGTTGTGGTGAAACGAGTCAACACAAGTGATTTAGATGAGGTTGCATCTGCTATTGGCCCCTGGACGAAGCTTGTTTGGTTGGAGAGTCCCACCAATCCTCGACAAATAGTTTCTGATATTCGCAAAATAGCAGCAATGGCTCATGCACATGGTGCTATTTTGCTGGTGGATAACAGTATAATGTCCCCTGTATTGTCACAGCCACTGGATCTAGGAGCAGACATTGTTATGCACTCGGCGACAAAATTTATTGCTGGACATAGTGATGTCATGGCGGGTGTTCTAGCTGTTAAAGGAGAAAGCTTGGCAGAACAGCTTTATTTCTTACAAAATGCAGAAGGCTCTGGGTTAGCTCCATTTGACTGTTGGATCTGTTTACGAGGAGTTAAAACAATGGCCTTACGTGTTGAGAAGCAACAGGACAATGCTCAAAAGATTGCGGAGTTTCTGGCTTCCCATCCACGAGTTAAGAAAGTTAACTATGCAGGGATTCCTGGTCATCCTGGCCGTGCCTTGCATTATTCTCAGGCAAAGGGTGCAGGATCTGTATTGAGCTTTCTGACAGGTTCACTGGCATTATCAAAGCATGTTGTCGAGACTACCAAATACTTCAGTATAACTGTCAGTTTTGATACAGGTAGGGAGTGTGAAGTCCCTTATAAGCCTCCCTGCTTCATGTCACATGCAAGCATACCATCTGCCGTGCGTGAGGCCAGAGGTCTATCTGAAGATCTTGTTCGTATTTCTGTGGGGATTGAGGATGTGAATGATCTCATTGCTGATTTGGACCATGCACTTCAAACTGGCCCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0003962 GO:0004121 GO:0004123 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006555 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009069 GO:0009070 GO:0009086 GO:0009092 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0017144 GO:0019279 GO:0019343 GO:0019344 GO:0019346 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0050667 GO:0070279 GO:0071265 GO:0071266 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00450 ko01100 ko01110 ko01230 map00270 map00450 map01100 map01110 map01230

Pfam Domains

Protein Families

Cys_Met_Meta_PP

Protein Analysis

484

Amino Acids

51.71

Weight (kDa)

5.52

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cys_Met_Meta_PP	PF01053	83 - 480	1.3e-130	Cys/Met metabolism PLP-dependent enzyme
Aminotran_5	PF00266	216 - 298	8.1e-06	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57050 AT3G57050 AT3G57050 AT3G57050 AT3G57050
fragaria_vesca	FvH4_3g30150 FvH4_3g30150 FvH4_3g30150 FvH4_3g30150 FvH4_3g30150
malus_domestica	MD12G1093700.v1.1
prunus_persica	Prupe.7G042400_v2.0.a1 Prupe.7G042400_v2.0.a1 Prupe.7G042400_v2.0.a1
pyrus_communis	pycom12g07890
rosa_chinensis	RchiOBHm_Chr2g0125281
rosa_laevigata	RLG00000018853
rosa_multiflora	Rmu_sc0003505.1_g000036
rosa_roxburghii	Rroxscaffold_2G00118120 Rroxscaffold_2G00118630
rosa_rugosa	Rorug02G0256500 Rorug02G0256600
rosa_samantha	Rh2AG314800 Rh2BG322900 Rh2CG304900 Rh2DG341100
rosa_wichuraiana	Rw2G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1299
AccB7I	CCANNNNNTGG	1 cut(s)	635
AccI	GTMKAC	1 cut(s)	245
AciI	CCGC	5 cut(s)	5, 8, 396, 914, 1079
AclWI	GGATC	4 cut(s)	272, 855, 1016, 1189
AcoI	YGGCCR	1 cut(s)	1144
AcsI	RAATTY	2 cut(s)	259, 884
AcuI	CTGAAG	3 cut(s)	165, 1234, 1386
AdeI	CACNNNGTG	1 cut(s)	791
AfiI	CCNNNNNNNGG	4 cut(s)	543, 544, 595, 635
AflIII	ACRYGT	1 cut(s)	1042
AgsI	TTSAA	4 cut(s)	72, 139, 214, 1439
AhlI	ACTAGT	1 cut(s)	470
AjnI	CCWGG	4 cut(s)	76, 698, 1132, 1141
Alw21I	GWGCWC	2 cut(s)	179, 460
Alw26I	GTCTC	1 cut(s)	1229
AlwI	GGATC	4 cut(s)	272, 855, 1016, 1189
AlwNI	CAGNNNCTG	2 cut(s)	844, 1184
AoxI	GGCC	7 cut(s)	32, 522, 694, 1035, 1144, 1350, 1444
ApeKI	GCWGC	3 cut(s)	482, 491, 770
ApoI	RAATTY	2 cut(s)	259, 884
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AspS9I	GGNCC	5 cut(s)	374, 522, 695, 1426, 1445
AsuHPI	GGTGA	1 cut(s)	658
AvaII	GGWCC	2 cut(s)	374, 1426
AxyI	CCTNAGG	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	126
BauI	CACGAG	2 cut(s)	408, 1101
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	2 cut(s)	179, 460
BbvI	GCAGC	3 cut(s)	469, 478, 782
BccI	CCATC	6 cut(s)	160, 188, 214, 512, 1104, 1342
BceAI	ACGGC	3 cut(s)	509, 1131, 1325
BciT130I	CCWGG	4 cut(s)	78, 700, 1134, 1143
BcoDI	GTCTC	1 cut(s)	1229
BcuI	ACTAGT	1 cut(s)	470
BfaI	CTAG	6 cut(s)	36, 339, 390, 471, 851, 923
BfmI	CTRYAG	1 cut(s)	363
BglII	AGATCT	1 cut(s)	1369
BisI	GCNGC	5 cut(s)	6, 9, 483, 492, 771
BlsI	GCNGC	5 cut(s)	7, 10, 484, 493, 772
Bme1390I	CCNGG	4 cut(s)	78, 700, 1134, 1143
Bme18I	GGWCC	2 cut(s)	374, 1426
BmgT120I	GGNCC	5 cut(s)	374, 522, 695, 1426, 1445
BmiI	GGNNCC	2 cut(s)	523, 697
BmrFI	CCNGG	4 cut(s)	78, 700, 1134, 1143
BmsI	GCATC	3 cut(s)	277, 403, 692
BpiI	GAAGAC	1 cut(s)	20
BpmI	CTGGAG	2 cut(s)	600, 657
Bpu10I	CCTNAGC	1 cut(s)	559
BsaAI	YACGTR	1 cut(s)	1043
BsaJI	CCNNGG	1 cut(s)	698
BsaXI	ACNNNNNCTCC	2 cut(s)	630, 660
Bsc4I	CCNNNNNNNGG	4 cut(s)	543, 544, 595, 635
Bse1I	ACTGG	4 cut(s)	640, 849, 1215, 1447
Bse21I	CCTNAGG	1 cut(s)	108
Bse3DI	GCAATG	3 cut(s)	297, 780, 1413
BseBI	CCWGG	4 cut(s)	78, 700, 1134, 1143
BseDI	CCNNGG	1 cut(s)	698
BseGI	GGATG	4 cut(s)	175, 1096, 1138, 1405
BseLI	CCNNNNNNNGG	4 cut(s)	543, 544, 595, 635
BseMI	GCAATG	3 cut(s)	297, 780, 1413
BseMII	CTCAG	1 cut(s)	1178
BseNI	ACTGG	4 cut(s)	640, 849, 1215, 1447
BseRI	GAGGAG	2 cut(s)	581, 1035
BseXI	GCAGC	3 cut(s)	469, 478, 782
BsgI	GTGCAG	1 cut(s)	1197
BshFI	GGCC	7 cut(s)	34, 524, 696, 1037, 1146, 1352, 1446
BsiHKAI	GWGCWC	2 cut(s)	179, 460
BslFI	GGGAC	5 cut(s)	512, 601, 711, 808, 1277
BslI	CCNNNNNNNGG	4 cut(s)	543, 544, 595, 635
BsmAI	GTCTC	1 cut(s)	1229
BsmFI	GGGAC	5 cut(s)	512, 601, 711, 808, 1277
BsnI	GGCC	7 cut(s)	34, 524, 696, 1037, 1146, 1352, 1446
Bsp1286I	GDGCHC	3 cut(s)	126, 179, 460
Bsp143I	GATC	8 cut(s)	52, 277, 451, 847, 1008, 1181, 1369, 1408
BspACI	CCGC	5 cut(s)	5, 8, 396, 914, 1079
BspANI	GGCC	7 cut(s)	34, 524, 696, 1037, 1146, 1352, 1446
BspCNI	CTCAG	1 cut(s)	1177
BspLI	GGNNCC	2 cut(s)	523, 697
BspPI	GGATC	4 cut(s)	272, 855, 1016, 1189
BsrDI	GCAATG	3 cut(s)	297, 780, 1413
BsrI	ACTGG	4 cut(s)	640, 849, 1215, 1447
BssECI	CCNNGG	1 cut(s)	698
BssMI	GATC	8 cut(s)	52, 277, 451, 847, 1008, 1181, 1369, 1408
BssSI	CACGAG	2 cut(s)	408, 1101
Bst2BI	CACGAG	2 cut(s)	408, 1101
Bst2UI	CCWGG	4 cut(s)	78, 700, 1134, 1143
Bst4CI	ACNGT	4 cut(s)	149, 815, 1004, 1261
BstAPI	GCANNNNNTGC	2 cut(s)	791, 1175
BstBAI	YACGTR	1 cut(s)	1043
BstC8I	GCNNGC	1 cut(s)	1327
BstDEI	CTNAG	4 cut(s)	108, 418, 559, 1164
BstF5I	GGATG	4 cut(s)	175, 1096, 1138, 1405
BstKTI	GATC	8 cut(s)	55, 280, 454, 850, 1011, 1184, 1372, 1411
BstMAI	GTCTC	1 cut(s)	1229
BstMBI	GATC	8 cut(s)	52, 277, 451, 847, 1008, 1181, 1369, 1408
BstMWI	GCNNNNNNNGC	9 cut(s)	121, 232, 455, 488, 491, 497, 776, 791, 1175
BstNI	CCWGG	4 cut(s)	78, 700, 1134, 1143
BstNSI	RCATGY	2 cut(s)	1229, 1325
BstSCI	CCNGG	4 cut(s)	76, 698, 1132, 1141
BstSFI	CTRYAG	1 cut(s)	363
BstV1I	GCAGC	3 cut(s)	469, 478, 782
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	4 cut(s)	847, 1008, 1181, 1369
BstYI	RGATCY	4 cut(s)	847, 1008, 1181, 1369
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	7 cut(s)	34, 524, 696, 1037, 1146, 1352, 1446
BtsCI	GGATG	4 cut(s)	175, 1096, 1138, 1405
BtsIMutI	CAGTG	2 cut(s)	842, 1208
Cac8I	GCNNGC	1 cut(s)	1327
CaiI	CAGNNNCTG	2 cut(s)	844, 1184
Cfr13I	GGNCC	5 cut(s)	374, 522, 695, 1426, 1445
CviAII	CATG	7 cut(s)	782, 788, 910, 1226, 1315, 1322, 1430
DdeI	CTNAG	4 cut(s)	108, 418, 559, 1164
DpnI	GATC	8 cut(s)	54, 279, 453, 849, 1010, 1183, 1371, 1410
DpnII	GATC	8 cut(s)	52, 277, 451, 847, 1008, 1181, 1369, 1408
DraIII	CACNNNGTG	1 cut(s)	791
EaeI	YGGCCR	1 cut(s)	1144
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	374, 1426
Eco57I	CTGAAG	3 cut(s)	165, 1234, 1386
Eco81I	CCTNAGG	1 cut(s)	108
EcoRII	CCWGG	4 cut(s)	76, 698, 1132, 1141
EcoT38I	GRGCYC	1 cut(s)	126
FaeI	CATG	7 cut(s)	785, 791, 913, 1229, 1318, 1325, 1433
FaqI	GGGAC	5 cut(s)	512, 601, 711, 808, 1277
FatI	CATG	7 cut(s)	781, 787, 909, 1225, 1314, 1321, 1429
FauI	CCCGC	1 cut(s)	907
FblI	GTMKAC	1 cut(s)	245
Fnu4HI	GCNGC	5 cut(s)	6, 9, 483, 492, 771
FokI	GGATG	4 cut(s)	182, 1083, 1125, 1412
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	5 cut(s)	6, 9, 483, 492, 771
FspBI	CTAG	6 cut(s)	36, 339, 390, 471, 851, 923
GluI	GCNGC	5 cut(s)	6, 9, 483, 492, 771
GsuI	CTGGAG	2 cut(s)	600, 657
HaeIII	GGCC	7 cut(s)	34, 524, 696, 1037, 1146, 1352, 1446
Hin1II	CATG	7 cut(s)	785, 791, 913, 1229, 1318, 1325, 1433
HincII	GTYRAC	3 cut(s)	246, 658, 1117
HindII	GTYRAC	3 cut(s)	246, 658, 1117
HindIII	AAGCTT	3 cut(s)	437, 707, 940
HinfI	GANTC	5 cut(s)	103, 625, 654, 724, 1129
HpaI	GTTAAC	1 cut(s)	1117
HphI	GGTGA	1 cut(s)	658
Hpy166II	GTNNAC	6 cut(s)	145, 246, 658, 1016, 1117, 1208
Hpy188I	TCNGA	4 cut(s)	604, 754, 1200, 1366
Hpy188III	TCNNGA	1 cut(s)	1234
Hpy8I	GTNNAC	6 cut(s)	145, 246, 658, 1016, 1117, 1208
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	3 cut(s)	366, 548, 971
HpyCH4III	ACNGT	4 cut(s)	149, 815, 1004, 1261
HpyCH4IV	ACGT	2 cut(s)	63, 1042
HpyF10VI	GCNNNNNNNGC	9 cut(s)	121, 232, 455, 488, 491, 497, 776, 791, 1175
HpyF3I	CTNAG	4 cut(s)	108, 418, 559, 1164
HpySE526I	ACGT	2 cut(s)	63, 1042
Hsp92II	CATG	7 cut(s)	785, 791, 913, 1229, 1318, 1325, 1433
KspAI	GTTAAC	1 cut(s)	1117
Kzo9I	GATC	8 cut(s)	52, 277, 451, 847, 1008, 1181, 1369, 1408
LmnI	GCTCC	3 cut(s)	223, 854, 997
Lsp1109I	GCAGC	3 cut(s)	469, 478, 782
LweI	GCATC	3 cut(s)	277, 403, 692
MaeI	CTAG	6 cut(s)	36, 339, 390, 471, 851, 923
MaeII	ACGT	2 cut(s)	63, 1042
MaeIII	GTNAC	2 cut(s)	834, 1317
MalI	GATC	8 cut(s)	54, 279, 453, 849, 1010, 1183, 1371, 1410
MboI	GATC	8 cut(s)	52, 277, 451, 847, 1008, 1181, 1369, 1408
MboII	GAAGA	5 cut(s)	6, 9, 20, 344, 1379
MflI	RGATCY	4 cut(s)	847, 1008, 1181, 1369
MhlI	GDGCHC	3 cut(s)	126, 179, 460
MluCI	AATT	2 cut(s)	259, 884
MlyI	GAGTC	3 cut(s)	112, 663, 733
MmeI	TCCRAC	2 cut(s)	699, 986
MnlI	CCTC	8 cut(s)	559, 670, 747, 1013, 1314, 1342, 1349, 1390
MseI	TTAA	5 cut(s)	324, 930, 1026, 1107, 1116
MslI	CAYNNNNRTG	3 cut(s)	786, 866, 903
MspR9I	CCNGG	4 cut(s)	78, 700, 1134, 1143
MvaI	CCWGG	4 cut(s)	78, 700, 1134, 1143
MwoI	GCNNNNNNNGC	9 cut(s)	121, 232, 455, 488, 491, 497, 776, 791, 1175
NdeII	GATC	8 cut(s)	52, 277, 451, 847, 1008, 1181, 1369, 1408
NlaIII	CATG	7 cut(s)	785, 791, 913, 1229, 1318, 1325, 1433
NlaIV	GGNNCC	2 cut(s)	523, 697
NmeAIII	GCCGAG	1 cut(s)	854
NmuCI	GTSAC	2 cut(s)	834, 1317
NspI	RCATGY	2 cut(s)	1229, 1325
PfeI	GAWTC	2 cut(s)	625, 1129
PflMI	CCANNNNNTGG	1 cut(s)	635
PkrI	GCNGC	5 cut(s)	7, 10, 484, 493, 772
PleI	GAGTC	3 cut(s)	111, 662, 732
PpsI	GAGTC	3 cut(s)	111, 662, 732
Ppu21I	YACGTR	1 cut(s)	1043
PsiI	TTATAA	1 cut(s)	1299
Psp6I	CCWGG	4 cut(s)	76, 698, 1132, 1141
PspGI	CCWGG	4 cut(s)	76, 698, 1132, 1141
PspN4I	GGNNCC	2 cut(s)	523, 697
PspPI	GGNCC	5 cut(s)	374, 522, 695, 1426, 1445
PstNI	CAGNNNCTG	2 cut(s)	844, 1184
PsuI	RGATCY	4 cut(s)	847, 1008, 1181, 1369
RseI	CAYNNNNRTG	3 cut(s)	786, 866, 903
SalI	GTCGAC	1 cut(s)	244
SaqAI	TTAA	5 cut(s)	324, 930, 1026, 1107, 1116
SatI	GCNGC	5 cut(s)	6, 9, 483, 492, 771
Sau3AI	GATC	8 cut(s)	52, 277, 451, 847, 1008, 1181, 1369, 1408
Sau96I	GGNCC	5 cut(s)	374, 522, 695, 1426, 1445
SchI	GAGTC	3 cut(s)	112, 663, 733
ScrFI	CCNGG	4 cut(s)	78, 700, 1134, 1143
SduI	GDGCHC	3 cut(s)	126, 179, 460
SfaNI	GCATC	3 cut(s)	277, 403, 692
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	2 cut(s)	374, 1426
SmiMI	CAYNNNNRTG	3 cut(s)	786, 866, 903
SpeI	ACTAGT	1 cut(s)	470
Sse9I	AATT	2 cut(s)	259, 884
SsiI	CCGC	5 cut(s)	5, 8, 396, 914, 1079
SspMI	CTAG	6 cut(s)	36, 339, 390, 471, 851, 923
StyD4I	CCNGG	4 cut(s)	76, 698, 1132, 1141
TaaI	ACNGT	4 cut(s)	149, 815, 1004, 1261
TaiI	ACGT	2 cut(s)	66, 1045
TaqI	TCGA	6 cut(s)	152, 245, 264, 454, 739, 1233
TaqII	GACCGA	1 cut(s)	621
TasI	AATT	2 cut(s)	259, 884
TauI	GCSGC	2 cut(s)	8, 11
TfiI	GAWTC	2 cut(s)	625, 1129
Tru1I	TTAA	5 cut(s)	324, 930, 1026, 1107, 1116
Tru9I	TTAA	5 cut(s)	324, 930, 1026, 1107, 1116
TscAI	CASTG	2 cut(s)	849, 1215
TseFI	GTSAC	2 cut(s)	834, 1317
TseI	GCWGC	3 cut(s)	482, 491, 770
Tsp45I	GTSAC	2 cut(s)	834, 1317
TspDTI	ATGAA	3 cut(s)	272, 308, 1303
TspRI	CASTG	2 cut(s)	849, 1215
Van91I	CCANNNNNTGG	1 cut(s)	635
VpaK11BI	GGWCC	2 cut(s)	374, 1426
XapI	RAATTY	2 cut(s)	259, 884
XceI	RCATGY	2 cut(s)	1229, 1325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1002
XmiI	GTMKAC	1 cut(s)	245
XspI	CTAG	6 cut(s)	36, 339, 390, 471, 851, 923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.