MD12G1093700.v1.1

Cystathionine beta-lyase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
12294080 .. 12307377
13298 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1093700.v1.1.491

Sequence Viewer

Length: 1419 bp
ATGGCCGCTTCCTCTTCTCTCTCTTTTAGGTCTTTCTTCAGCTCCGTCGCCGCCGATTCCAATGACGTCGGTTTAACGCCTGGGAATTTCGGGCCAAGCTTTGTGGATTCCCAGGTCAGTTTCAGGTTCGCAAAGGCAACGATATCAACGGGAAAGACGTTGTCCTGTGAGAATAAATTTCAATTGAAGTGTTCGGTGGACAGAGATATGGATCTGAGCACTTCAGCAATATCTGATGGTGTTGCAGACTGCGTAAATGAAGTTGGGCTGAAAGAGCCAAGTATCTCAACCATGCTGATGAACTTTGAGAACAAGTTTGATCCGTTTGATGCAATGAATACGCCACTTTACCAAACAGCTACGTTTAAGCAGCCTTCAGCAACAGAAAATGGTGCTTATGATTATACTAGAAGTGGAAATCCCACACGGGATGCCTTGGAAAGCCTTTTGGCAAAGCTTGATAAAGCAGATCGAGCATTTTGTTTCACTAGTGGAATGGCTGCTTTGGCGGCTGTTGCTCATCTTTTAGGAACAGGTGAGGAGATTGTTGCAGGAGACGACATTTATGGAGGTTCTGATCGGTTGCTATCACAAGTAGTTCCAAAGACTGGAGTTGTGGTGAAACGAGTGAACACAAGTGATTTAGATGAGGTTGCATCTGCTATTGGCCCCTGGACAAAGCTTGTGTGGCTGGAGAGTCCCACCAATCCTCGACAAATGATTTCTGATATTCGTAAAATAGCAGAGATGGCTCATGCACATGGTGCTATTGTGTTAGTCGATAACAGTATAATGTCTCCCGTATTGTCACAGCCACTGGATCTCGGAGCAGACATTGTTATGCACTCGGCCACAAAGTTTATTGCTGGACACAGTGATGTCATGGCAGGTGTTTTAGCTGTTAAAGGCGATAGCTTGGCGAAACAGCTATATTTCCTACAAAATGCAGAAGGCTCTGGGTTAGCTCCATTTGATTGTTGGGTCTGTTTACGAGGAATTAAGACAATGGCCTTGCGTGTTGAGAAGCAACAGGATAATGCTCAAAAAATTGCTGAGTTCCTCGCTTCCCATCCGCGAGTGACACAAGTTAATTATGCTGGGCTTTCTGGTCATCCTGGACGTGCCTTGCATTATTCTCAGGCAAAGGGTGCAGGATCTGTATTGAGTTTTCTGACAGGTTCATTGTCACTATCAAAGCATATTGTCGAGACTACCAAATACTTCAGTATAACTGTCAGTTTCGGGAGTGTGAAGTCCCTTATAAGCCTGCCGTGCTTCATGTCTCATGCAAGCATACCATCTGCAGTGCGTGAGGCCAGAGGTCTATCTGAAGATCTTGTTCGTATTTCTGTGGGGATTGAGGATGTGAATGATCTGATTGCTGATTTGGACCATGCACTTAAAACTGGCGCTCTGTAG

Protein Analysis

473

Amino Acids

50.35

Weight (kDa)

5.68

Isoelectric Point (pI)

29.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cys_Met_Meta_PP PF01053 97 - 468 9.6e-145 Cys/Met metabolism PLP-dependent enzyme
Aminotran_1_2 PF00155 135 - 262 6e-06 Aminotransferase class I and II
Aminotran_5 PF00266 168 - 289 9.3e-07 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1262
AarI CACCTGC 1 cut(s) 878
AatII GACGTC 1 cut(s) 69
Acc36I ACCTGC 1 cut(s) 878
AccB7I CCANNNNNTGG 1 cut(s) 608
AccII CGCG 1 cut(s) 1075
AciI CCGC 4 cut(s) 6, 51, 509, 1073
AclWI GGATC 4 cut(s) 219, 314, 828, 1162
AcoI YGGCCR 2 cut(s) 3, 849
AcsI RAATTY 2 cut(s) 85, 176
AcuI CTGAAG 5 cut(s) 22, 207, 360, 1207, 1350
AcyI GRCGYC 1 cut(s) 66
AdeI CACNNNGTG 1 cut(s) 764
AfiI CCNNNNNNNGG 1 cut(s) 608
AgsI TTSAA 2 cut(s) 182, 187
AhlI ACTAGT 1 cut(s) 488
AjiI CACGTC 1 cut(s) 1121
AjnI CCWGG 4 cut(s) 79, 111, 671, 1114
AluBI AGCT 9 cut(s) 42, 99, 359, 457, 682, 899, 915, 928, 965
AluI AGCT 9 cut(s) 42, 99, 359, 457, 682, 899, 915, 928, 965
Alw21I GWGCWC 1 cut(s) 221
Alw26I GTCTC 4 cut(s) 549, 801, 1202, 1287
AlwI GGATC 4 cut(s) 219, 314, 828, 1162
AlwNI CAGNNNCTG 2 cut(s) 817, 1157
AoxI GGCC 6 cut(s) 3, 92, 667, 849, 1008, 1314
ApeKI GCWGC 2 cut(s) 370, 500
ApoI RAATTY 2 cut(s) 85, 176
AspLEI GCGC 1 cut(s) 1412
AspS9I GGNCC 3 cut(s) 92, 668, 1390
AsuHPI GGTGA 2 cut(s) 548, 631
AvaII GGWCC 1 cut(s) 1390
Bbv12I GWGCWC 1 cut(s) 221
BbvI GCAGC 2 cut(s) 382, 487
BccI CCATC 4 cut(s) 230, 742, 1077, 1306
BceAI ACGGC 1 cut(s) 1255
BciT130I CCWGG 4 cut(s) 81, 113, 673, 1116
BcoDI GTCTC 4 cut(s) 549, 801, 1202, 1287
BcuI ACTAGT 1 cut(s) 488
BfaI CTAG 2 cut(s) 408, 489
BfmI CTRYAG 2 cut(s) 1302, 1415
BfoI RGCGCY 1 cut(s) 1413
BfuAI ACCTGC 1 cut(s) 878
BglII AGATCT 1 cut(s) 1333
BisI GCNGC 5 cut(s) 6, 51, 371, 501, 510
BlsI GCNGC 5 cut(s) 7, 52, 372, 502, 511
Bme1390I CCNGG 4 cut(s) 81, 113, 673, 1116
Bme18I GGWCC 1 cut(s) 1390
BmgBI CACGTC 1 cut(s) 1121
BmgT120I GGNCC 3 cut(s) 92, 668, 1390
BmiI GGNNCC 1 cut(s) 670
BmrFI CCNGG 4 cut(s) 81, 113, 673, 1116
BmsI GCATC 3 cut(s) 319, 421, 665
BpmI CTGGAG 2 cut(s) 630, 713
BsaBI GATNNNNATC 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 4 cut(s) 80, 111, 435, 671
BsaXI ACNNNNNCTCC 2 cut(s) 603, 633
Bsc4I CCNNNNNNNGG 1 cut(s) 608
Bse1I ACTGG 3 cut(s) 613, 822, 1411
Bse3DI GCAATG 1 cut(s) 339
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 4 cut(s) 81, 113, 673, 1116
BseDI CCNNGG 4 cut(s) 80, 111, 435, 671
BseGI GGATG 4 cut(s) 436, 1069, 1111, 1369
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 608
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 3 cut(s) 206, 1044, 1151
BseNI ACTGG 3 cut(s) 613, 822, 1411
BseRI GAGGAG 1 cut(s) 554
BseXI GCAGC 2 cut(s) 382, 487
BseYI CCCAGC 1 cut(s) 1097
BsgI GTGCAG 1 cut(s) 1170
Bsh1236I CGCG 1 cut(s) 1075
BshFI GGCC 6 cut(s) 5, 94, 669, 851, 1010, 1316
BsiHKAI GWGCWC 1 cut(s) 221
BslFI GGGAC 2 cut(s) 684, 1240
BslI CCNNNNNNNGG 1 cut(s) 608
BsmAI GTCTC 4 cut(s) 549, 801, 1202, 1287
BsmBI CGTCTC 1 cut(s) 549
BsmFI GGGAC 2 cut(s) 684, 1240
BsnI GGCC 6 cut(s) 5, 94, 669, 851, 1010, 1316
Bsp1286I GDGCHC 1 cut(s) 221
Bsp143I GATC 8 cut(s) 211, 319, 469, 577, 820, 1154, 1333, 1372
BspACI CCGC 4 cut(s) 6, 51, 509, 1073
BspANI GGCC 6 cut(s) 5, 94, 669, 851, 1010, 1316
BspCNI CTCAG 3 cut(s) 207, 1045, 1150
BspFNI CGCG 1 cut(s) 1075
BspLI GGNNCC 1 cut(s) 670
BspMAI CTGCAG 1 cut(s) 1306
BspMI ACCTGC 1 cut(s) 878
BspPI GGATC 4 cut(s) 219, 314, 828, 1162
BsrDI GCAATG 1 cut(s) 339
BsrI ACTGG 3 cut(s) 613, 822, 1411
BssECI CCNNGG 4 cut(s) 80, 111, 435, 671
BssMI GATC 8 cut(s) 211, 319, 469, 577, 820, 1154, 1333, 1372
BssNI GRCGYC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 4 cut(s) 81, 113, 673, 1116
Bst4CI ACNGT 3 cut(s) 788, 875, 1234
Bst6I CTCTTC 1 cut(s) 19
BstACI GRCGYC 1 cut(s) 66
BstAPI GCANNNNNTGC 2 cut(s) 764, 1148
BstC8I GCNNGC 2 cut(s) 1268, 1291
BstDEI CTNAG 3 cut(s) 215, 1053, 1137
BstF5I GGATG 4 cut(s) 436, 1069, 1111, 1369
BstFNI CGCG 1 cut(s) 1075
BstH2I RGCGCY 1 cut(s) 1413
BstHHI GCGC 1 cut(s) 1412
BstKTI GATC 8 cut(s) 214, 322, 472, 580, 823, 1157, 1336, 1375
BstMAI GTCTC 4 cut(s) 549, 801, 1202, 1287
BstMBI GATC 8 cut(s) 211, 319, 469, 577, 820, 1154, 1333, 1372
BstNI CCWGG 4 cut(s) 81, 113, 673, 1116
BstSCI CCNGG 4 cut(s) 79, 111, 671, 1114
BstSFI CTRYAG 2 cut(s) 1302, 1415
BstUI CGCG 1 cut(s) 1075
BstV1I GCAGC 2 cut(s) 382, 487
BstX2I RGATCY 4 cut(s) 211, 820, 1154, 1333
BstYI RGATCY 4 cut(s) 211, 820, 1154, 1333
BsuRI GGCC 6 cut(s) 5, 94, 669, 851, 1010, 1316
BtrI CACGTC 1 cut(s) 1121
BtsCI GGATG 4 cut(s) 436, 1069, 1111, 1369
BtsI GCAGTG 1 cut(s) 1311
BtsIMutI CAGTG 3 cut(s) 815, 880, 1311
BveI ACCTGC 1 cut(s) 878
Cac8I GCNNGC 2 cut(s) 1268, 1291
CaiI CAGNNNCTG 2 cut(s) 817, 1157
CfoI GCGC 1 cut(s) 1412
Cfr13I GGNCC 3 cut(s) 92, 668, 1390
CspCI CAANNNNNGTGG 2 cut(s) 84, 119
CviAII CATG 7 cut(s) 292, 755, 761, 883, 1279, 1286, 1394
DdeI CTNAG 3 cut(s) 215, 1053, 1137
DpnI GATC 8 cut(s) 213, 321, 471, 579, 822, 1156, 1335, 1374
DpnII GATC 8 cut(s) 211, 319, 469, 577, 820, 1154, 1333, 1372
DraIII CACNNNGTG 1 cut(s) 764
EaeI YGGCCR 2 cut(s) 3, 849
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 435
Eco32I GATATC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 1390
Eco57I CTGAAG 5 cut(s) 22, 207, 360, 1207, 1350
EcoRII CCWGG 4 cut(s) 79, 111, 671, 1114
EcoRV GATATC 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 435
Esp3I CGTCTC 1 cut(s) 549
FaeI CATG 7 cut(s) 295, 758, 764, 886, 1282, 1289, 1397
FaqI GGGAC 2 cut(s) 684, 1240
FatI CATG 7 cut(s) 291, 754, 760, 882, 1278, 1285, 1393
Fnu4HI GCNGC 5 cut(s) 6, 51, 371, 501, 510
FokI GGATG 4 cut(s) 443, 1056, 1098, 1376
Fsp4HI GCNGC 5 cut(s) 6, 51, 371, 501, 510
FspBI CTAG 2 cut(s) 408, 489
GlaI GCGC 1 cut(s) 1411
GluI GCNGC 5 cut(s) 6, 51, 371, 501, 510
GsaI CCCAGC 1 cut(s) 1101
GsuI CTGGAG 2 cut(s) 630, 713
HaeII RGCGCY 1 cut(s) 1413
HaeIII GGCC 6 cut(s) 5, 94, 669, 851, 1010, 1316
HhaI GCGC 1 cut(s) 1412
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 7 cut(s) 295, 758, 764, 886, 1282, 1289, 1397
Hin6I GCGC 1 cut(s) 1410
HinP1I GCGC 1 cut(s) 1410
HindIII AAGCTT 3 cut(s) 97, 455, 680
HinfI GANTC 3 cut(s) 56, 107, 697
HphI GGTGA 2 cut(s) 548, 631
Hpy166II GTNNAC 3 cut(s) 199, 631, 989
Hpy188I TCNGA 8 cut(s) 216, 235, 577, 727, 827, 1173, 1330, 1377
Hpy188III TCNNGA 2 cut(s) 1207, 1243
Hpy8I GTNNAC 3 cut(s) 199, 631, 989
Hpy99I CGWCG 2 cut(s) 50, 71
HpyAV CCTTC 2 cut(s) 384, 944
HpyCH4III ACNGT 3 cut(s) 788, 875, 1234
HpyCH4IV ACGT 4 cut(s) 66, 158, 362, 1120
HpyF3I CTNAG 3 cut(s) 215, 1053, 1137
HpySE526I ACGT 4 cut(s) 66, 158, 362, 1120
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 7 cut(s) 295, 758, 764, 886, 1282, 1289, 1397
HspAI GCGC 1 cut(s) 1410
Kzo9I GATC 8 cut(s) 211, 319, 469, 577, 820, 1154, 1333, 1372
LmnI GCTCC 3 cut(s) 47, 827, 970
Lsp1109I GCAGC 2 cut(s) 382, 487
LweI GCATC 3 cut(s) 319, 421, 665
MaeI CTAG 2 cut(s) 408, 489
MaeII ACGT 4 cut(s) 66, 158, 362, 1120
MaeIII GTNAC 3 cut(s) 807, 1078, 1185
MalI GATC 8 cut(s) 213, 321, 471, 579, 822, 1156, 1335, 1374
MboI GATC 8 cut(s) 211, 319, 469, 577, 820, 1154, 1333, 1372
MboII GAAGA 3 cut(s) 6, 28, 1343
MfeI CAATTG 1 cut(s) 182
MflI RGATCY 4 cut(s) 211, 820, 1154, 1333
MhlI GDGCHC 1 cut(s) 221
MluCI AATT 6 cut(s) 85, 176, 182, 996, 1047, 1090
MlyI GAGTC 1 cut(s) 706
MseI TTAA 6 cut(s) 74, 366, 903, 999, 1089, 1401
MslI CAYNNNNRTG 4 cut(s) 296, 759, 839, 876
MspR9I CCNGG 4 cut(s) 81, 113, 673, 1116
MunI CAATTG 1 cut(s) 182
MvaI CCWGG 4 cut(s) 81, 113, 673, 1116
MvnI CGCG 1 cut(s) 1075
NdeII GATC 8 cut(s) 211, 319, 469, 577, 820, 1154, 1333, 1372
NlaIII CATG 7 cut(s) 295, 758, 764, 886, 1282, 1289, 1397
NlaIV GGNNCC 1 cut(s) 670
NmeAIII GCCGAG 1 cut(s) 827
NmuCI GTSAC 3 cut(s) 807, 1078, 1185
PaqCI CACCTGC 1 cut(s) 878
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PfeI GAWTC 2 cut(s) 56, 107
PflFI GACNNNGTC 1 cut(s) 160
PflMI CCANNNNNTGG 1 cut(s) 608
PfoI TCCNGGA 1 cut(s) 1114
PkrI GCNGC 5 cut(s) 7, 52, 372, 502, 511
PleI GAGTC 1 cut(s) 705
PpsI GAGTC 1 cut(s) 705
PsiI TTATAA 1 cut(s) 1262
Psp6I CCWGG 4 cut(s) 79, 111, 671, 1114
PspFI CCCAGC 1 cut(s) 1097
PspGI CCWGG 4 cut(s) 79, 111, 671, 1114
PspN4I GGNNCC 1 cut(s) 670
PspPI GGNCC 3 cut(s) 92, 668, 1390
PstI CTGCAG 1 cut(s) 1306
PstNI CAGNNNCTG 2 cut(s) 817, 1157
PsuI RGATCY 4 cut(s) 211, 820, 1154, 1333
PsyI GACNNNGTC 1 cut(s) 160
RseI CAYNNNNRTG 4 cut(s) 296, 759, 839, 876
SaqAI TTAA 6 cut(s) 74, 366, 903, 999, 1089, 1401
SatI GCNGC 5 cut(s) 6, 51, 371, 501, 510
Sau3AI GATC 8 cut(s) 211, 319, 469, 577, 820, 1154, 1333, 1372
Sau96I GGNCC 3 cut(s) 92, 668, 1390
SchI GAGTC 1 cut(s) 706
ScrFI CCNGG 4 cut(s) 81, 113, 673, 1116
SduI GDGCHC 1 cut(s) 221
SfaNI GCATC 3 cut(s) 319, 421, 665
SfcI CTRYAG 2 cut(s) 1302, 1415
SinI GGWCC 1 cut(s) 1390
SmiMI CAYNNNNRTG 4 cut(s) 296, 759, 839, 876
SpeI ACTAGT 1 cut(s) 488
Sse9I AATT 6 cut(s) 85, 176, 182, 996, 1047, 1090
SsiI CCGC 4 cut(s) 6, 51, 509, 1073
SspMI CTAG 2 cut(s) 408, 489
StyD4I CCNGG 4 cut(s) 79, 111, 671, 1114
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 3 cut(s) 788, 875, 1234
TaiI ACGT 4 cut(s) 69, 161, 365, 1123
TaqI TCGA 4 cut(s) 472, 712, 780, 1206
TasI AATT 6 cut(s) 85, 176, 182, 996, 1047, 1090
TauI GCSGC 3 cut(s) 8, 53, 512
TfiI GAWTC 2 cut(s) 56, 107
Tru1I TTAA 6 cut(s) 74, 366, 903, 999, 1089, 1401
Tru9I TTAA 6 cut(s) 74, 366, 903, 999, 1089, 1401
TscAI CASTG 3 cut(s) 822, 880, 1311
TseFI GTSAC 3 cut(s) 807, 1078, 1185
TseI GCWGC 2 cut(s) 370, 500
Tsp45I GTSAC 3 cut(s) 807, 1078, 1185
TspDTI ATGAA 5 cut(s) 273, 314, 350, 1170, 1267
TspGWI ACGGA 2 cut(s) 34, 312
TspRI CASTG 3 cut(s) 822, 880, 1311
Tth111I GACNNNGTC 1 cut(s) 160
Van91I CCANNNNNTGG 1 cut(s) 608
VpaK11BI GGWCC 1 cut(s) 1390
XapI RAATTY 2 cut(s) 85, 176
XcmI CCANNNNNNNNNTGG 1 cut(s) 975
XspI CTAG 2 cut(s) 408, 489
ZraI GACGTC 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.