Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006334

Physical Location & Seq

Genomic Coordinates Forward (+)

38962834 .. 38969925

Gene Structure 7092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG322900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGTCGGCGGCTTCTTCTTCTCTCTGTCTTCGGCCTAGTTCTCTCGCCATTGATCTCAACGACGTCGGTTCAACTCCTGGCAAGTTTGTGGCAAGTTTTGGGAGTCCTAAGGTGCGTTTGGGGCTCAAAAAGACATTCAAAGTGAACTGTTCGATAGACAGAGAGATGGATGTGAGCACTTCAGCTGTGGTTGATGGCGTGGCTGACTGCTTCAATGAGATGGAGCTAAAAGAGCCAAGTATGTCGACAATGCTGATGAATTTCGACAACAAGTTTGATCCTTACGATGCAATGAATACGCCACTCTACCAAACAGCTACTTTTAAGCAGCCTTCTGCTACAGAAAATGGTCCTTACGATTATACTAGAAGCGGAAATCCTACACGAGATGCCTTGGAAAGCATTTTGGCAAAGCTTGATAAGGCAGATCGAGCACTTTGTTTCACTAGTGGAATGGCTGCTTTGGCTGCTGTTGCTCATCTTGTAGGAACAGGAGAGGAGATTGTTGCTGGAGATGACCTGTATGGGGGTTCTGACCGATTGTTGTCCCAAGTGATTCCAAAAACTGGAGTTGTGGTGAAACGAGTCAACACAAGTGATTTAGATGAGGTTGCATCTGCTATTGGCCCCTGGACGAAGCTTGTTTGGTTGGAGAGTCCAACTAATCCTCGACAAATAGTTTCTGATATTCGCAAAATAGCAGCAATGGCTCATGCACATGGTGCTATTTTGCTGGTGGATAACAGTATAATGTCCCCTGTATTGTCACAGCCACTGGATCTAGGAGCAGACATTGTTATGCACTCGGCGACAAAATTTATTGCTGGACATAGTGATGTCATGGCGGGTGTTCTAGCTGTTAAAGGAGAAAGCTTGGCAGAACAGCTTTATTTCTTACAAAATGCAGAAGGCTCTGGGTTAGCTCCATTTGACTGTTGGATCTGTTTACGAGGAGTTAAAACAATGGCCTTACGTGTTGAGAAGCAACAGGACAATGCTCAAAAGATTGCAGAGTTTCTGGCTTCCCATCCACGAGTTAAGAAAGTTAACTATGCAGGGATTCCTGGTCATCCTGGCCGTGCCTTGCATTATTCTCAGGCAAAGGGTGCAGGATCTGTATTGAGCTTTCTGACAGGTTCACTGGCATTATCAAAGCATGTTGTCGAGACTACCAAATACTTCAGTATAACTGTCAGTTTTGGGAGTGTGAAGTCCCTTATAAGCCTCCCCTGCTTCATGTCACATGCAAGCATACCATCTGCCGTGCGTGAGGCCAGAGGTCTATCTGAAGATCTTGTTCGTATTTCTGTGGGGATTGAGGATGTGAATGATCTCATTGCTGATTTGGACCATGCACTTCAAACTGGCCCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0003962 GO:0004121 GO:0004123 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006555 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009069 GO:0009070 GO:0009086 GO:0009092 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0017144 GO:0019279 GO:0019343 GO:0019344 GO:0019346 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0050667 GO:0070279 GO:0071265 GO:0071266 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00450 ko01100 ko01110 ko01230 map00270 map00450 map01100 map01110 map01230

Pfam Domains

Protein Families

Cys_Met_Meta_PP

Protein Analysis

458

Amino Acids

48.91

Weight (kDa)

5.9

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cys_Met_Meta_PP	PF01053	83 - 454	8e-144	Cys/Met metabolism PLP-dependent enzyme
Aminotran_5	PF00266	163 - 275	4e-06	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57050 AT3G57050 AT3G57050 AT3G57050 AT3G57050
fragaria_vesca	FvH4_3g30150 FvH4_3g30150 FvH4_3g30150 FvH4_3g30150 FvH4_3g30150
malus_domestica	MD12G1093700.v1.1
prunus_persica	Prupe.7G042400_v2.0.a1 Prupe.7G042400_v2.0.a1 Prupe.7G042400_v2.0.a1
pyrus_communis	pycom12g07890
rosa_chinensis	RchiOBHm_Chr2g0125281
rosa_laevigata	RLG00000018853
rosa_multiflora	Rmu_sc0003505.1_g000036
rosa_roxburghii	Rroxscaffold_2G00118120 Rroxscaffold_2G00118630
rosa_rugosa	Rorug02G0256500 Rorug02G0256600
rosa_samantha	Rh2AG314800 Rh2BG322900 Rh2CG304900 Rh2DG341100
rosa_wichuraiana	Rw2G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1220
AatII	GACGTC	1 cut(s)	66
AccB7I	CCANNNNNTGG	1 cut(s)	566
AccI	GTMKAC	1 cut(s)	245
AciI	CCGC	3 cut(s)	8, 372, 845
AclWI	GGATC	4 cut(s)	272, 786, 947, 1120
AcoI	YGGCCR	1 cut(s)	1075
AcsI	RAATTY	2 cut(s)	259, 815
AcuI	CTGAAG	3 cut(s)	165, 1165, 1308
AcyI	GRCGYC	1 cut(s)	63
AdeI	CACNNNGTG	1 cut(s)	722
AfiI	CCNNNNNNNGG	2 cut(s)	526, 566
AflIII	ACRYGT	1 cut(s)	973
AgsI	TTSAA	4 cut(s)	72, 139, 214, 1361
AhlI	ACTAGT	1 cut(s)	446
AjnI	CCWGG	4 cut(s)	76, 629, 1063, 1072
Alw21I	GWGCWC	2 cut(s)	179, 436
Alw26I	GTCTC	1 cut(s)	1160
AlwI	GGATC	4 cut(s)	272, 786, 947, 1120
AlwNI	CAGNNNCTG	2 cut(s)	775, 1115
AoxI	GGCC	6 cut(s)	32, 625, 966, 1075, 1272, 1366
ApeKI	GCWGC	4 cut(s)	328, 458, 467, 701
ApoI	RAATTY	2 cut(s)	259, 815
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AspS9I	GGNCC	4 cut(s)	350, 626, 1348, 1367
AsuHPI	GGTGA	1 cut(s)	589
AvaII	GGWCC	2 cut(s)	350, 1348
AxyI	CCTNAGG	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	126
BauI	CACGAG	2 cut(s)	384, 1032
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	2 cut(s)	179, 436
BbvI	GCAGC	4 cut(s)	340, 445, 454, 713
BccI	CCATC	5 cut(s)	160, 188, 214, 1035, 1264
BceAI	ACGGC	2 cut(s)	1062, 1247
BciT130I	CCWGG	4 cut(s)	78, 631, 1065, 1074
BcoDI	GTCTC	1 cut(s)	1160
BcuI	ACTAGT	1 cut(s)	446
BfaI	CTAG	5 cut(s)	36, 366, 447, 782, 854
BfmI	CTRYAG	1 cut(s)	339
BglII	AGATCT	1 cut(s)	1291
BisI	GCNGC	5 cut(s)	9, 329, 459, 468, 702
BlsI	GCNGC	5 cut(s)	10, 330, 460, 469, 703
Bme1390I	CCNGG	4 cut(s)	78, 631, 1065, 1074
Bme18I	GGWCC	2 cut(s)	350, 1348
BmgT120I	GGNCC	4 cut(s)	350, 626, 1348, 1367
BmiI	GGNNCC	1 cut(s)	628
BmrFI	CCNGG	4 cut(s)	78, 631, 1065, 1074
BmsI	GCATC	3 cut(s)	277, 379, 623
BpiI	GAAGAC	1 cut(s)	20
BpmI	CTGGAG	2 cut(s)	531, 588
BsaAI	YACGTR	1 cut(s)	974
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	393, 629
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	2 cut(s)	526, 566
Bse1I	ACTGG	4 cut(s)	571, 780, 1146, 1369
Bse21I	CCTNAGG	1 cut(s)	108
Bse3DI	GCAATG	3 cut(s)	297, 711, 1335
BseBI	CCWGG	4 cut(s)	78, 631, 1065, 1074
BseDI	CCNNGG	2 cut(s)	393, 629
BseGI	GGATG	4 cut(s)	175, 1027, 1069, 1327
BseLI	CCNNNNNNNGG	2 cut(s)	526, 566
BseMI	GCAATG	3 cut(s)	297, 711, 1335
BseMII	CTCAG	1 cut(s)	1109
BseNI	ACTGG	4 cut(s)	571, 780, 1146, 1369
BseRI	GAGGAG	2 cut(s)	512, 966
BseXI	GCAGC	4 cut(s)	340, 445, 454, 713
BsgI	GTGCAG	1 cut(s)	1128
BshFI	GGCC	6 cut(s)	34, 627, 968, 1077, 1274, 1368
BsiHKAI	GWGCWC	2 cut(s)	179, 436
BslFI	GGGAC	3 cut(s)	532, 739, 1198
BslI	CCNNNNNNNGG	2 cut(s)	526, 566
BsmAI	GTCTC	1 cut(s)	1160
BsmFI	GGGAC	3 cut(s)	532, 739, 1198
BsnI	GGCC	6 cut(s)	34, 627, 968, 1077, 1274, 1368
Bsp1286I	GDGCHC	3 cut(s)	126, 179, 436
Bsp143I	GATC	8 cut(s)	52, 277, 427, 778, 939, 1112, 1291, 1330
BspACI	CCGC	3 cut(s)	8, 372, 845
BspANI	GGCC	6 cut(s)	34, 627, 968, 1077, 1274, 1368
BspCNI	CTCAG	1 cut(s)	1108
BspLI	GGNNCC	1 cut(s)	628
BspPI	GGATC	4 cut(s)	272, 786, 947, 1120
BsrDI	GCAATG	3 cut(s)	297, 711, 1335
BsrI	ACTGG	4 cut(s)	571, 780, 1146, 1369
BssECI	CCNNGG	2 cut(s)	393, 629
BssMI	GATC	8 cut(s)	52, 277, 427, 778, 939, 1112, 1291, 1330
BssNI	GRCGYC	1 cut(s)	63
BssSI	CACGAG	2 cut(s)	384, 1032
BssT1I	CCWWGG	1 cut(s)	393
Bst2BI	CACGAG	2 cut(s)	384, 1032
Bst2UI	CCWGG	4 cut(s)	78, 631, 1065, 1074
Bst4CI	ACNGT	4 cut(s)	149, 746, 935, 1192
BstACI	GRCGYC	1 cut(s)	63
BstAPI	GCANNNNNTGC	2 cut(s)	722, 1106
BstBAI	YACGTR	1 cut(s)	974
BstC8I	GCNNGC	1 cut(s)	1249
BstDEI	CTNAG	2 cut(s)	108, 1095
BstF5I	GGATG	4 cut(s)	175, 1027, 1069, 1327
BstKTI	GATC	8 cut(s)	55, 280, 430, 781, 942, 1115, 1294, 1333
BstMAI	GTCTC	1 cut(s)	1160
BstMBI	GATC	8 cut(s)	52, 277, 427, 778, 939, 1112, 1291, 1330
BstNI	CCWGG	4 cut(s)	78, 631, 1065, 1074
BstNSI	RCATGY	2 cut(s)	1160, 1247
BstSCI	CCNGG	4 cut(s)	76, 629, 1063, 1072
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	4 cut(s)	340, 445, 454, 713
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	4 cut(s)	778, 939, 1112, 1291
BstYI	RGATCY	4 cut(s)	778, 939, 1112, 1291
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	6 cut(s)	34, 627, 968, 1077, 1274, 1368
BtsCI	GGATG	4 cut(s)	175, 1027, 1069, 1327
BtsIMutI	CAGTG	2 cut(s)	773, 1139
Cac8I	GCNNGC	1 cut(s)	1249
CaiI	CAGNNNCTG	2 cut(s)	775, 1115
Cfr13I	GGNCC	4 cut(s)	350, 626, 1348, 1367
CviAII	CATG	7 cut(s)	713, 719, 841, 1157, 1237, 1244, 1352
DdeI	CTNAG	2 cut(s)	108, 1095
DpnI	GATC	8 cut(s)	54, 279, 429, 780, 941, 1114, 1293, 1332
DpnII	GATC	8 cut(s)	52, 277, 427, 778, 939, 1112, 1291, 1330
DraIII	CACNNNGTG	1 cut(s)	722
EaeI	YGGCCR	1 cut(s)	1075
Eco130I	CCWWGG	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	350, 1348
Eco57I	CTGAAG	3 cut(s)	165, 1165, 1308
Eco81I	CCTNAGG	1 cut(s)	108
EcoRII	CCWGG	4 cut(s)	76, 629, 1063, 1072
EcoT14I	CCWWGG	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	7 cut(s)	716, 722, 844, 1160, 1240, 1247, 1355
FaqI	GGGAC	3 cut(s)	532, 739, 1198
FatI	CATG	7 cut(s)	712, 718, 840, 1156, 1236, 1243, 1351
FauI	CCCGC	1 cut(s)	838
FblI	GTMKAC	1 cut(s)	245
Fnu4HI	GCNGC	5 cut(s)	9, 329, 459, 468, 702
FokI	GGATG	4 cut(s)	182, 1014, 1056, 1334
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	5 cut(s)	9, 329, 459, 468, 702
FspBI	CTAG	5 cut(s)	36, 366, 447, 782, 854
GluI	GCNGC	5 cut(s)	9, 329, 459, 468, 702
GsuI	CTGGAG	2 cut(s)	531, 588
HaeIII	GGCC	6 cut(s)	34, 627, 968, 1077, 1274, 1368
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	7 cut(s)	716, 722, 844, 1160, 1240, 1247, 1355
HincII	GTYRAC	3 cut(s)	246, 589, 1048
HindII	GTYRAC	3 cut(s)	246, 589, 1048
HindIII	AAGCTT	3 cut(s)	413, 638, 871
HinfI	GANTC	5 cut(s)	103, 556, 585, 655, 1060
HpaI	GTTAAC	1 cut(s)	1048
HphI	GGTGA	1 cut(s)	589
Hpy166II	GTNNAC	6 cut(s)	145, 246, 589, 947, 1048, 1139
Hpy188I	TCNGA	4 cut(s)	535, 685, 1131, 1288
Hpy188III	TCNNGA	1 cut(s)	1165
Hpy8I	GTNNAC	6 cut(s)	145, 246, 589, 947, 1048, 1139
Hpy99I	CGWCG	2 cut(s)	65, 68
HpyAV	CCTTC	2 cut(s)	342, 902
HpyCH4III	ACNGT	4 cut(s)	149, 746, 935, 1192
HpyCH4IV	ACGT	2 cut(s)	63, 973
HpyF3I	CTNAG	2 cut(s)	108, 1095
HpySE526I	ACGT	2 cut(s)	63, 973
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	7 cut(s)	716, 722, 844, 1160, 1240, 1247, 1355
KspAI	GTTAAC	1 cut(s)	1048
Kzo9I	GATC	8 cut(s)	52, 277, 427, 778, 939, 1112, 1291, 1330
LmnI	GCTCC	3 cut(s)	223, 785, 928
Lsp1109I	GCAGC	4 cut(s)	340, 445, 454, 713
LweI	GCATC	3 cut(s)	277, 379, 623
MaeI	CTAG	5 cut(s)	36, 366, 447, 782, 854
MaeII	ACGT	2 cut(s)	63, 973
MaeIII	GTNAC	2 cut(s)	765, 1239
MalI	GATC	8 cut(s)	54, 279, 429, 780, 941, 1114, 1293, 1332
MboI	GATC	8 cut(s)	52, 277, 427, 778, 939, 1112, 1291, 1330
MboII	GAAGA	4 cut(s)	6, 9, 20, 1301
MflI	RGATCY	4 cut(s)	778, 939, 1112, 1291
MhlI	GDGCHC	3 cut(s)	126, 179, 436
MluCI	AATT	2 cut(s)	259, 815
MlyI	GAGTC	3 cut(s)	112, 594, 664
MmeI	TCCRAC	3 cut(s)	630, 683, 917
MnlI	CCTC	8 cut(s)	490, 601, 678, 944, 1235, 1264, 1271, 1312
MseI	TTAA	5 cut(s)	324, 861, 957, 1038, 1047
MslI	CAYNNNNRTG	3 cut(s)	717, 797, 834
MspA1I	CMGCKG	1 cut(s)	185
MspR9I	CCNGG	4 cut(s)	78, 631, 1065, 1074
MvaI	CCWGG	4 cut(s)	78, 631, 1065, 1074
NdeII	GATC	8 cut(s)	52, 277, 427, 778, 939, 1112, 1291, 1330
NlaIII	CATG	7 cut(s)	716, 722, 844, 1160, 1240, 1247, 1355
NlaIV	GGNNCC	1 cut(s)	628
NmeAIII	GCCGAG	1 cut(s)	785
NmuCI	GTSAC	2 cut(s)	765, 1239
NspI	RCATGY	2 cut(s)	1160, 1247
PfeI	GAWTC	2 cut(s)	556, 1060
PflMI	CCANNNNNTGG	1 cut(s)	566
PkrI	GCNGC	5 cut(s)	10, 330, 460, 469, 703
PleI	GAGTC	3 cut(s)	111, 593, 663
PpsI	GAGTC	3 cut(s)	111, 593, 663
Ppu21I	YACGTR	1 cut(s)	974
PsiI	TTATAA	1 cut(s)	1220
Psp6I	CCWGG	4 cut(s)	76, 629, 1063, 1072
PspGI	CCWGG	4 cut(s)	76, 629, 1063, 1072
PspN4I	GGNNCC	1 cut(s)	628
PspPI	GGNCC	4 cut(s)	350, 626, 1348, 1367
PstNI	CAGNNNCTG	2 cut(s)	775, 1115
PsuI	RGATCY	4 cut(s)	778, 939, 1112, 1291
PvuII	CAGCTG	1 cut(s)	185
RseI	CAYNNNNRTG	3 cut(s)	717, 797, 834
SalI	GTCGAC	1 cut(s)	244
SaqAI	TTAA	5 cut(s)	324, 861, 957, 1038, 1047
SatI	GCNGC	5 cut(s)	9, 329, 459, 468, 702
Sau3AI	GATC	8 cut(s)	52, 277, 427, 778, 939, 1112, 1291, 1330
Sau96I	GGNCC	4 cut(s)	350, 626, 1348, 1367
SchI	GAGTC	3 cut(s)	112, 594, 664
ScrFI	CCNGG	4 cut(s)	78, 631, 1065, 1074
SduI	GDGCHC	3 cut(s)	126, 179, 436
SfaNI	GCATC	3 cut(s)	277, 379, 623
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	2 cut(s)	350, 1348
SmiMI	CAYNNNNRTG	3 cut(s)	717, 797, 834
SpeI	ACTAGT	1 cut(s)	446
Sse9I	AATT	2 cut(s)	259, 815
SsiI	CCGC	3 cut(s)	8, 372, 845
SspMI	CTAG	5 cut(s)	36, 366, 447, 782, 854
StyD4I	CCNGG	4 cut(s)	76, 629, 1063, 1072
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	4 cut(s)	149, 746, 935, 1192
TaiI	ACGT	2 cut(s)	66, 976
TaqI	TCGA	6 cut(s)	152, 245, 264, 430, 670, 1164
TaqII	GACCGA	1 cut(s)	552
TasI	AATT	2 cut(s)	259, 815
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	556, 1060
Tru1I	TTAA	5 cut(s)	324, 861, 957, 1038, 1047
Tru9I	TTAA	5 cut(s)	324, 861, 957, 1038, 1047
TscAI	CASTG	2 cut(s)	780, 1146
TseFI	GTSAC	2 cut(s)	765, 1239
TseI	GCWGC	4 cut(s)	328, 458, 467, 701
Tsp45I	GTSAC	2 cut(s)	765, 1239
TspDTI	ATGAA	3 cut(s)	272, 308, 1225
TspRI	CASTG	2 cut(s)	780, 1146
Van91I	CCANNNNNTGG	1 cut(s)	566
VpaK11BI	GGWCC	2 cut(s)	350, 1348
XapI	RAATTY	2 cut(s)	259, 815
XceI	RCATGY	2 cut(s)	1160, 1247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	933
XmiI	GTMKAC	1 cut(s)	245
XspI	CTAG	5 cut(s)	36, 366, 447, 782, 854
ZraI	GACGTC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.