FvH4_3g30150

Cystathionine beta-lyase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
23370122 .. 23377523
7402 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30150.t2

Sequence Viewer

Length: 1383 bp
ATGACCGCCGCTTCGCCTTCTTCTCTCTCTTTTGGGCTTTTCTCTCTCTCCATTGATCTCAAAGGCGACGTCGGTTTAACGCCTGGCAAGTTAAGTTTTGGGAGTCCCAAGGTGCGTTTCGGGCTCAAGAAGACAACACTTGAAACAATAACATTTAAAGTGAATTGTTCGATAGAGAAAGAGATGGATTTGAGCACTTCACCTTTGGCCGAGTGCTTAAATGAGATGGAGCTCAAAGAGCCAAGTATGTCAACGGTGCTGATGAATTTCGACAACAAGTTTGATCCTTACCATGCAATGAACACCCCACTTTACCAAACAGCTACTTTTAAGCAGCCTTCCGCTACAGAAAATGGTCCTTATGATTATACTAGAAGCGGGAATCCTACAAGAGATGCGTTAGAAAGCATTTTGGCAAGGCTTGATAAAGCAGATAGAGCACTTTGTTTTACTAGTGGAATGGCTGCTTTGGCTGCTGTTGCTCATCTTGTAGGAACAGGAGAGGAGATTGTTGCTGGAGATGACCTGTATGGGGGTACTGACCGATTGTTATCCCAAGTTATTCCAAAAACTGGAATTGTGGTGAAACGAGTCAACACAAGTGATTTAGATGAGGTTGCATCTGCTATTGGCCCCTGGACGAAGCTTGTGTGGCTGGAGAGTCCCACCAATCCTCGGCAAATAGTTTCTGATATTCGGAAAATAGCAGAGATGGCTCATGCACATGATGCTATATTGCTGGTGGATAACAGTATAATGTCCCCTGTATTGTCACAGCCACTGGATCTAGGAGCAGACATCGTTATGCACTCGGCTACAAAGTTTATTGCTGGACATAGTGATGTCATGGCAGGTGTTCTGGCTATTAGAGGAGAAAGATTGGCAGAACAGTTGTATTTCTTACAAAATGCAGAAGGCTCTGGGTTAGCTCCATTTGACTGTTGGATTTGTTTACGAGGAGTTAAAACAATGGCCTTACGTGTTGAAAAGCAACAGGACAATGCTCAAAAGATTGCAGAGTTTCTCGCTTCCCATCCACGAGTTAAGAAAGTTAACTATGCAGGGATTCCTGATCATCCTGGCCGTGCCTTGCATTATTCTCAGGCAAAGGGTGCAGGATCTGTATTGAGCTTTCTGACAGGTTCACTGGCATTATCAAAGCATATTGTTGAGACCACCAAATACTTCAGTGTAACTGTCAGTTTTGGCAGCGTGAAGTCCCTCATAAGTCTCCCTTGCTTCATGTCACATGCAAGCATACCATCTGCCGTGCGTGATTCCAGAGGTCTAACTGAAGATCTTGTTCGTATTTCTGTGGGGATTGAGGATGTGAATGATCTCATTGCTGATTTGGACCATGCCCTTCAAACTGGCCCTCTGTAA

Protein Analysis

461

Amino Acids

49.61

Weight (kDa)

5.86

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cys_Met_Meta_PP PF01053 85 - 456 3.7e-143 Cys/Met metabolism PLP-dependent enzyme
Aminotran_5 PF00266 190 - 277 8e-06 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 842
AatII GACGTC 1 cut(s) 72
Acc36I ACCTGC 1 cut(s) 842
AccB7I CCANNNNNTGG 1 cut(s) 572
AciI CCGC 4 cut(s) 6, 9, 342, 378
AclWI GGATC 3 cut(s) 278, 792, 1126
AcoI YGGCCR 2 cut(s) 207, 1081
AcsI RAATTY 1 cut(s) 265
AcuI CTGAAG 2 cut(s) 1171, 1314
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 1 cut(s) 538
AfiI CCNNNNNNNGG 3 cut(s) 532, 572, 675
AflIII ACRYGT 1 cut(s) 979
AgsI TTSAA 3 cut(s) 143, 986, 1367
AhlI ACTAGT 1 cut(s) 452
AjnI CCWGG 3 cut(s) 82, 635, 1078
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 5 cut(s) 232, 323, 646, 929, 1131
AluI AGCT 5 cut(s) 232, 323, 646, 929, 1131
Alw21I GWGCWC 3 cut(s) 197, 234, 442
Alw26I GTCTC 2 cut(s) 1166, 1235
AlwI GGATC 3 cut(s) 278, 792, 1126
AlwNI CAGNNNCTG 2 cut(s) 781, 1121
AoxI GGCC 5 cut(s) 207, 631, 972, 1081, 1372
ApeKI GCWGC 4 cut(s) 334, 464, 473, 1209
ApoI RAATTY 1 cut(s) 265
ArsI GACNNNNNNTTYG 5 cut(s) 27, 54, 86, 263, 295
AspS9I GGNCC 4 cut(s) 356, 632, 1354, 1373
AsuHPI GGTGA 2 cut(s) 192, 595
AvaII GGWCC 2 cut(s) 356, 1354
BanII GRGCYC 2 cut(s) 126, 234
BauI CACGAG 1 cut(s) 1038
BbsI GAAGAC 1 cut(s) 137
Bbv12I GWGCWC 3 cut(s) 197, 234, 442
BbvI GCAGC 4 cut(s) 346, 451, 460, 1221
BccI CCATC 5 cut(s) 178, 220, 706, 1041, 1270
BceAI ACGGC 2 cut(s) 1068, 1253
BciT130I CCWGG 3 cut(s) 84, 637, 1080
BclI TGATCA 1 cut(s) 1072
BcoDI GTCTC 2 cut(s) 1166, 1235
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 3 cut(s) 372, 453, 788
BfmI CTRYAG 1 cut(s) 345
BfuAI ACCTGC 1 cut(s) 842
BglII AGATCT 1 cut(s) 1297
BisI GCNGC 5 cut(s) 9, 335, 465, 474, 1210
BlsI GCNGC 5 cut(s) 10, 336, 466, 475, 1211
Bme1390I CCNGG 3 cut(s) 84, 637, 1080
Bme18I GGWCC 2 cut(s) 356, 1354
BmgT120I GGNCC 4 cut(s) 356, 632, 1354, 1373
BmiI GGNNCC 1 cut(s) 634
BmrFI CCNGG 3 cut(s) 84, 637, 1080
BmsI GCATC 3 cut(s) 385, 629, 718
BpiI GAAGAC 1 cut(s) 137
BpmI CTGGAG 2 cut(s) 537, 677
BpuEI CTTGAG 1 cut(s) 110
BsaAI YACGTR 1 cut(s) 980
BsaBI GATNNNNATC 1 cut(s) 550
BsaHI GRCGYC 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 1166
BsaJI CCNNGG 3 cut(s) 108, 635, 674
Bsc4I CCNNNNNNNGG 3 cut(s) 532, 572, 675
Bse1I ACTGG 4 cut(s) 577, 786, 1152, 1375
Bse3DI GCAATG 2 cut(s) 303, 1341
Bse8I GATNNNNATC 1 cut(s) 550
BseBI CCWGG 3 cut(s) 84, 637, 1080
BseDI CCNNGG 3 cut(s) 108, 635, 674
BseGI GGATG 3 cut(s) 1033, 1075, 1333
BseJI GATNNNNATC 1 cut(s) 550
BseLI CCNNNNNNNGG 3 cut(s) 532, 572, 675
BseMI GCAATG 2 cut(s) 303, 1341
BseMII CTCAG 1 cut(s) 1115
BseNI ACTGG 4 cut(s) 577, 786, 1152, 1375
BseRI GAGGAG 3 cut(s) 518, 885, 972
BseXI GCAGC 4 cut(s) 346, 451, 460, 1221
BsgI GTGCAG 1 cut(s) 1134
BshFI GGCC 5 cut(s) 209, 633, 974, 1083, 1374
BsiHKAI GWGCWC 3 cut(s) 197, 234, 442
BslFI GGGAC 4 cut(s) 90, 648, 745, 1204
BslI CCNNNNNNNGG 3 cut(s) 532, 572, 675
BsmAI GTCTC 2 cut(s) 1166, 1235
BsmFI GGGAC 4 cut(s) 90, 648, 745, 1204
BsnI GGCC 5 cut(s) 209, 633, 974, 1083, 1374
Bso31I GGTCTC 1 cut(s) 1166
Bsp1286I GDGCHC 4 cut(s) 126, 197, 234, 442
Bsp143I GATC 7 cut(s) 55, 283, 784, 1072, 1118, 1297, 1336
BspACI CCGC 4 cut(s) 6, 9, 342, 378
BspANI GGCC 5 cut(s) 209, 633, 974, 1083, 1374
BspCNI CTCAG 1 cut(s) 1114
BspLI GGNNCC 1 cut(s) 634
BspMI ACCTGC 1 cut(s) 842
BspPI GGATC 3 cut(s) 278, 792, 1126
BspTNI GGTCTC 1 cut(s) 1166
BsrDI GCAATG 2 cut(s) 303, 1341
BsrI ACTGG 4 cut(s) 577, 786, 1152, 1375
BssECI CCNNGG 3 cut(s) 108, 635, 674
BssMI GATC 7 cut(s) 55, 283, 784, 1072, 1118, 1297, 1336
BssNI GRCGYC 1 cut(s) 69
BssSI CACGAG 1 cut(s) 1038
BssT1I CCWWGG 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 1038
Bst2UI CCWGG 3 cut(s) 84, 637, 1080
Bst4CI ACNGT 5 cut(s) 256, 752, 891, 941, 1198
BstACI GRCGYC 1 cut(s) 69
BstAPI GCANNNNNTGC 2 cut(s) 728, 1112
BstBAI YACGTR 1 cut(s) 980
BstC8I GCNNGC 1 cut(s) 1255
BstDEI CTNAG 1 cut(s) 1101
BstF5I GGATG 3 cut(s) 1033, 1075, 1333
BstKTI GATC 7 cut(s) 58, 286, 787, 1075, 1121, 1300, 1339
BstMAI GTCTC 2 cut(s) 1166, 1235
BstMBI GATC 7 cut(s) 55, 283, 784, 1072, 1118, 1297, 1336
BstNI CCWGG 3 cut(s) 84, 637, 1080
BstNSI RCATGY 1 cut(s) 1253
BstSCI CCNGG 3 cut(s) 82, 635, 1078
BstSFI CTRYAG 1 cut(s) 345
BstV1I GCAGC 4 cut(s) 346, 451, 460, 1221
BstV2I GAAGAC 1 cut(s) 137
BstX2I RGATCY 3 cut(s) 784, 1118, 1297
BstYI RGATCY 3 cut(s) 784, 1118, 1297
BsuRI GGCC 5 cut(s) 209, 633, 974, 1083, 1374
BtsCI GGATG 3 cut(s) 1033, 1075, 1333
BtsIMutI CAGTG 3 cut(s) 779, 1145, 1195
BveI ACCTGC 1 cut(s) 842
Cac8I GCNNGC 1 cut(s) 1255
CaiI CAGNNNCTG 2 cut(s) 781, 1121
Cfr13I GGNCC 4 cut(s) 356, 632, 1354, 1373
Csp6I GTAC 1 cut(s) 537
CviAII CATG 7 cut(s) 293, 719, 725, 847, 1243, 1250, 1358
CviQI GTAC 1 cut(s) 537
DdeI CTNAG 1 cut(s) 1101
DpnI GATC 7 cut(s) 57, 285, 786, 1074, 1120, 1299, 1338
DpnII GATC 7 cut(s) 55, 283, 784, 1072, 1118, 1297, 1336
DraI TTTAAA 1 cut(s) 157
EaeI YGGCCR 2 cut(s) 207, 1081
Ecl136II GAGCTC 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 108
Eco24I GRGCYC 2 cut(s) 126, 234
Eco31I GGTCTC 1 cut(s) 1166
Eco47I GGWCC 2 cut(s) 356, 1354
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 2 cut(s) 1171, 1314
EcoICRI GAGCTC 1 cut(s) 232
EcoRII CCWGG 3 cut(s) 82, 635, 1078
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 2 cut(s) 126, 234
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 7 cut(s) 296, 722, 728, 850, 1246, 1253, 1361
FalI AAGNNNNNCTT 2 cut(s) 1219, 1251
FaqI GGGAC 4 cut(s) 90, 648, 745, 1204
FatI CATG 7 cut(s) 292, 718, 724, 846, 1242, 1249, 1357
FauI CCCGC 1 cut(s) 371
FbaI TGATCA 1 cut(s) 1072
Fnu4HI GCNGC 5 cut(s) 9, 335, 465, 474, 1210
FokI GGATG 3 cut(s) 1020, 1062, 1340
FriOI GRGCYC 2 cut(s) 126, 234
Fsp4HI GCNGC 5 cut(s) 9, 335, 465, 474, 1210
FspBI CTAG 3 cut(s) 372, 453, 788
GluI GCNGC 5 cut(s) 9, 335, 465, 474, 1210
GsuI CTGGAG 2 cut(s) 537, 677
HaeIII GGCC 5 cut(s) 209, 633, 974, 1083, 1374
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 7 cut(s) 296, 722, 728, 850, 1246, 1253, 1361
HincII GTYRAC 3 cut(s) 252, 595, 1054
HindII GTYRAC 3 cut(s) 252, 595, 1054
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 6 cut(s) 103, 382, 591, 661, 1066, 1277
HpaI GTTAAC 1 cut(s) 1054
HphI GGTGA 2 cut(s) 192, 595
Hpy166II GTNNAC 5 cut(s) 252, 595, 953, 1054, 1145
Hpy188I TCNGA 3 cut(s) 691, 699, 1137
Hpy188III TCNNGA 3 cut(s) 127, 1070, 1281
Hpy8I GTNNAC 5 cut(s) 252, 595, 953, 1054, 1145
Hpy99I CGWCG 2 cut(s) 71, 74
HpyAV CCTTC 4 cut(s) 27, 348, 908, 1373
HpyCH4III ACNGT 5 cut(s) 256, 752, 891, 941, 1198
HpyCH4IV ACGT 2 cut(s) 69, 979
HpyF3I CTNAG 1 cut(s) 1101
HpySE526I ACGT 2 cut(s) 69, 979
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 7 cut(s) 296, 722, 728, 850, 1246, 1253, 1361
Ksp22I TGATCA 1 cut(s) 1072
KspAI GTTAAC 1 cut(s) 1054
Kzo9I GATC 7 cut(s) 55, 283, 784, 1072, 1118, 1297, 1336
LmnI GCTCC 3 cut(s) 229, 791, 934
Lsp1109I GCAGC 4 cut(s) 346, 451, 460, 1221
LweI GCATC 3 cut(s) 385, 629, 718
MaeI CTAG 3 cut(s) 372, 453, 788
MaeII ACGT 2 cut(s) 69, 979
MaeIII GTNAC 3 cut(s) 771, 1192, 1245
MalI GATC 7 cut(s) 57, 285, 786, 1074, 1120, 1299, 1338
MboI GATC 7 cut(s) 55, 283, 784, 1072, 1118, 1297, 1336
MboII GAAGA 3 cut(s) 12, 142, 1307
MflI RGATCY 3 cut(s) 784, 1118, 1297
MhlI GDGCHC 4 cut(s) 126, 197, 234, 442
MluCI AATT 3 cut(s) 163, 265, 576
MlyI GAGTC 3 cut(s) 112, 600, 670
MmeI TCCRAC 1 cut(s) 923
MnlI CCTC 8 cut(s) 496, 607, 684, 863, 950, 1232, 1277, 1318
MseI TTAA 8 cut(s) 77, 92, 156, 218, 330, 963, 1044, 1053
MslI CAYNNNNRTG 3 cut(s) 723, 803, 840
MspR9I CCNGG 3 cut(s) 84, 637, 1080
MvaI CCWGG 3 cut(s) 84, 637, 1080
NdeII GATC 7 cut(s) 55, 283, 784, 1072, 1118, 1297, 1336
NlaIII CATG 7 cut(s) 296, 722, 728, 850, 1246, 1253, 1361
NlaIV GGNNCC 1 cut(s) 634
NmeAIII GCCGAG 3 cut(s) 235, 655, 791
NmuCI GTSAC 2 cut(s) 771, 1245
NspI RCATGY 1 cut(s) 1253
PaqCI CACCTGC 1 cut(s) 842
PfeI GAWTC 3 cut(s) 382, 1066, 1277
PflMI CCANNNNNTGG 1 cut(s) 572
PkrI GCNGC 5 cut(s) 10, 336, 466, 475, 1211
PleI GAGTC 3 cut(s) 111, 599, 669
PpsI GAGTC 3 cut(s) 111, 599, 669
Ppu21I YACGTR 1 cut(s) 980
Psp124BI GAGCTC 1 cut(s) 234
Psp6I CCWGG 3 cut(s) 82, 635, 1078
PspGI CCWGG 3 cut(s) 82, 635, 1078
PspN4I GGNNCC 1 cut(s) 634
PspPI GGNCC 4 cut(s) 356, 632, 1354, 1373
PstNI CAGNNNCTG 2 cut(s) 781, 1121
PsuI RGATCY 3 cut(s) 784, 1118, 1297
RsaI GTAC 1 cut(s) 538
RsaNI GTAC 1 cut(s) 537
RseI CAYNNNNRTG 3 cut(s) 723, 803, 840
SacI GAGCTC 1 cut(s) 234
SaqAI TTAA 8 cut(s) 77, 92, 156, 218, 330, 963, 1044, 1053
SatI GCNGC 5 cut(s) 9, 335, 465, 474, 1210
Sau3AI GATC 7 cut(s) 55, 283, 784, 1072, 1118, 1297, 1336
Sau96I GGNCC 4 cut(s) 356, 632, 1354, 1373
SchI GAGTC 3 cut(s) 112, 600, 670
ScrFI CCNGG 3 cut(s) 84, 637, 1080
SduI GDGCHC 4 cut(s) 126, 197, 234, 442
SfaNI GCATC 3 cut(s) 385, 629, 718
SfcI CTRYAG 1 cut(s) 345
SinI GGWCC 2 cut(s) 356, 1354
SmiMI CAYNNNNRTG 3 cut(s) 723, 803, 840
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SpeI ACTAGT 1 cut(s) 452
Sse9I AATT 3 cut(s) 163, 265, 576
SsiI CCGC 4 cut(s) 6, 9, 342, 378
SspMI CTAG 3 cut(s) 372, 453, 788
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 3 cut(s) 82, 635, 1078
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 5 cut(s) 256, 752, 891, 941, 1198
TaiI ACGT 2 cut(s) 72, 982
TaqI TCGA 2 cut(s) 170, 270
TaqII GACCGA 1 cut(s) 558
TasI AATT 3 cut(s) 163, 265, 576
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 3 cut(s) 382, 1066, 1277
Tru1I TTAA 8 cut(s) 77, 92, 156, 218, 330, 963, 1044, 1053
Tru9I TTAA 8 cut(s) 77, 92, 156, 218, 330, 963, 1044, 1053
TscAI CASTG 3 cut(s) 786, 1152, 1195
TseFI GTSAC 2 cut(s) 771, 1245
TseI GCWGC 4 cut(s) 334, 464, 473, 1209
Tsp45I GTSAC 2 cut(s) 771, 1245
TspDTI ATGAA 3 cut(s) 278, 314, 1231
TspRI CASTG 3 cut(s) 786, 1152, 1195
Van91I CCANNNNNTGG 1 cut(s) 572
VpaK11BI GGWCC 2 cut(s) 356, 1354
XapI RAATTY 1 cut(s) 265
XceI RCATGY 1 cut(s) 1253
XcmI CCANNNNNNNNNTGG 1 cut(s) 939
XspI CTAG 3 cut(s) 372, 453, 788
ZraI GACGTC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.