Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006334

Physical Location & Seq

Genomic Coordinates Forward (+)

44320600 .. 44332650

Gene Structure 12051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG341100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGATGTGAGCACTTCAGCTATGGTTGATGGCGTGGCTGACTGCTTGAATGAGATGGAGCTAAAAGAGCCAAGTATGTCGACAATGCTGATGAATTTCGACAACAAGTTTGATCCTTACGATGCAATGAATACGCCACTCTACCAAACAGCTACTTTTAAGCAGCCTTCTGCTACAGAAAATGGTCCTTACGATTATACTAGAAGCGGAAATCCTACACGAGATGCCTTAGAAAGCATTTTGGCAAAGCTTGATAAGGCAGATCGAGCACTTTGTTTCACTAGTGGAATGGCTGCTTTGGCTGCTGTTGCTCATCTTATAGGAACAGGAGAGGAGATTGTTGCTGGAGATGACCTGTATGGGGGTTCTGACCGATTGTTGTCCCAAGTGATTCCAAAAACTGGAGTTGTGGTGAAACGAGTCAACACAAGTGATTTAGATGAGGTTGCATCTGCTATTGGCCCCTGGACGAAGCTTGTTTGGTTGGAGAGTCCCACCAATCCTCGACAAATAGTTTCTGATATTCGCAAAATAGCAGCAATGGCTCATGCACATGGTGCTATTTTGCTGGTGGATAACAGTATAATGTCCCCTGTATTGTCACAGCCACTGGATCTAGGAGCAGACATTGTTATGCACTCGGCGACAAAATTTATTGCTGGACATAGTGATGTCATGGCGGGTGTTCTAGCTGTTAAAGGAGAAAGCTTGGCAGAACAGCTTTATTTCTTACAAAATGCAGAAGGCTCTGGGTTAGCTCCATTTGACTGTTGGATCTGTTTACGAGGAGTTAAAACAATGGCCTTACGTGTTGAGAAGCAACAGGACAATGCTCAAAAGATCGCGGAGTTTCTGGCTTCCCATCCACGAGTTAAGAAAGTTAACTATGCAGGGATTCCTGGTCATCCTGGCCGTGCCTTGCATTATTCTCAGGCAAAGGGTGCAGGATCTGTATTGAGCTTTCTGACAGGTTCACTGGCATTATCAAAGCATGTTGTCGAGACTACCAAATACTTCAGTATAACTGTCAGTTTTGGGAGTGTGAAGTCCCTTATAAGCCTCCCCTGCTTCATGTCACATGCAAGCATACCATCTGCCGTGCGTGAGGCCAGAGGTCTATCTGAAGATCTTGTTCGTATTTCTGTGGGGATTGAGGATGTGAATGATCTCATTGCTGATTTGGACCATGCACTTCAAACTGGCCCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0003962 GO:0004121 GO:0004123 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006555 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009069 GO:0009070 GO:0009086 GO:0009092 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0017144 GO:0019279 GO:0019343 GO:0019344 GO:0019346 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0050667 GO:0070279 GO:0071265 GO:0071266 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00450 ko01100 ko01110 ko01230 map00270 map00450 map01100 map01110 map01230

Pfam Domains

Protein Families

Cys_Met_Meta_PP

Protein Analysis

403

Amino Acids

43.15

Weight (kDa)

5.46

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cys_Met_Meta_PP	PF01053	28 - 399	6e-144	Cys/Met metabolism PLP-dependent enzyme
Aminotran_1_2	PF00155	67 - 193	6.8e-06	Aminotransferase class I and II
Aminotran_5	PF00266	108 - 220	3.2e-06	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57050 AT3G57050 AT3G57050 AT3G57050 AT3G57050
fragaria_vesca	FvH4_3g30150 FvH4_3g30150 FvH4_3g30150 FvH4_3g30150 FvH4_3g30150
malus_domestica	MD12G1093700.v1.1
prunus_persica	Prupe.7G042400_v2.0.a1 Prupe.7G042400_v2.0.a1 Prupe.7G042400_v2.0.a1
pyrus_communis	pycom12g07890
rosa_chinensis	RchiOBHm_Chr2g0125281
rosa_laevigata	RLG00000018853
rosa_multiflora	Rmu_sc0003505.1_g000036
rosa_roxburghii	Rroxscaffold_2G00118120 Rroxscaffold_2G00118630
rosa_rugosa	Rorug02G0256500 Rorug02G0256600
rosa_samantha	Rh2AG314800 Rh2BG322900 Rh2CG304900 Rh2DG341100
rosa_wichuraiana	Rw2G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1055
AccB7I	CCANNNNNTGG	1 cut(s)	401
AccI	GTMKAC	1 cut(s)	80
AccII	CGCG	1 cut(s)	845
AciI	CCGC	3 cut(s)	207, 680, 845
AclWI	GGATC	4 cut(s)	107, 621, 782, 955
AcoI	YGGCCR	1 cut(s)	910
AcsI	RAATTY	2 cut(s)	94, 650
AcuI	CTGAAG	2 cut(s)	1000, 1143
AdeI	CACNNNGTG	1 cut(s)	557
AfiI	CCNNNNNNNGG	2 cut(s)	361, 401
AflIII	ACRYGT	1 cut(s)	808
AgsI	TTSAA	2 cut(s)	49, 1196
AhlI	ACTAGT	1 cut(s)	281
AjnI	CCWGG	3 cut(s)	464, 898, 907
Alw21I	GWGCWC	2 cut(s)	14, 271
Alw26I	GTCTC	1 cut(s)	995
AlwI	GGATC	4 cut(s)	107, 621, 782, 955
AlwNI	CAGNNNCTG	2 cut(s)	610, 950
AoxI	GGCC	5 cut(s)	460, 801, 910, 1107, 1201
ApeKI	GCWGC	4 cut(s)	163, 293, 302, 536
ApoI	RAATTY	2 cut(s)	94, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
AspS9I	GGNCC	4 cut(s)	185, 461, 1183, 1202
AsuHPI	GGTGA	1 cut(s)	424
AvaII	GGWCC	2 cut(s)	185, 1183
BauI	CACGAG	2 cut(s)	219, 867
Bbv12I	GWGCWC	2 cut(s)	14, 271
BbvI	GCAGC	4 cut(s)	175, 280, 289, 548
BccI	CCATC	4 cut(s)	23, 49, 870, 1099
BceAI	ACGGC	2 cut(s)	897, 1082
BciT130I	CCWGG	3 cut(s)	466, 900, 909
BcoDI	GTCTC	1 cut(s)	995
BcuI	ACTAGT	1 cut(s)	281
BfaI	CTAG	4 cut(s)	201, 282, 617, 689
BfmI	CTRYAG	1 cut(s)	174
BglII	AGATCT	1 cut(s)	1126
BisI	GCNGC	4 cut(s)	164, 294, 303, 537
BlsI	GCNGC	4 cut(s)	165, 295, 304, 538
Bme1390I	CCNGG	3 cut(s)	466, 900, 909
Bme18I	GGWCC	2 cut(s)	185, 1183
BmgT120I	GGNCC	4 cut(s)	185, 461, 1183, 1202
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	3 cut(s)	466, 900, 909
BmsI	GCATC	3 cut(s)	112, 214, 458
BpmI	CTGGAG	2 cut(s)	366, 423
BsaAI	YACGTR	1 cut(s)	809
BsaJI	CCNNGG	1 cut(s)	464
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 401
Bse1I	ACTGG	4 cut(s)	406, 615, 981, 1204
Bse3DI	GCAATG	3 cut(s)	132, 546, 1170
BseBI	CCWGG	3 cut(s)	466, 900, 909
BseDI	CCNNGG	1 cut(s)	464
BseGI	GGATG	4 cut(s)	10, 862, 904, 1162
BseLI	CCNNNNNNNGG	2 cut(s)	361, 401
BseMI	GCAATG	3 cut(s)	132, 546, 1170
BseMII	CTCAG	1 cut(s)	944
BseNI	ACTGG	4 cut(s)	406, 615, 981, 1204
BseRI	GAGGAG	2 cut(s)	347, 801
BseXI	GCAGC	4 cut(s)	175, 280, 289, 548
BsgI	GTGCAG	1 cut(s)	963
Bsh1236I	CGCG	1 cut(s)	845
BshFI	GGCC	5 cut(s)	462, 803, 912, 1109, 1203
BsiHKAI	GWGCWC	2 cut(s)	14, 271
BslFI	GGGAC	4 cut(s)	367, 477, 574, 1033
BslI	CCNNNNNNNGG	2 cut(s)	361, 401
BsmAI	GTCTC	1 cut(s)	995
BsmFI	GGGAC	4 cut(s)	367, 477, 574, 1033
BsnI	GGCC	5 cut(s)	462, 803, 912, 1109, 1203
Bsp1286I	GDGCHC	2 cut(s)	14, 271
Bsp143I	GATC	8 cut(s)	112, 262, 613, 774, 840, 947, 1126, 1165
BspACI	CCGC	3 cut(s)	207, 680, 845
BspANI	GGCC	5 cut(s)	462, 803, 912, 1109, 1203
BspCNI	CTCAG	1 cut(s)	943
BspFNI	CGCG	1 cut(s)	845
BspLI	GGNNCC	1 cut(s)	463
BspPI	GGATC	4 cut(s)	107, 621, 782, 955
BsrDI	GCAATG	3 cut(s)	132, 546, 1170
BsrI	ACTGG	4 cut(s)	406, 615, 981, 1204
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	8 cut(s)	112, 262, 613, 774, 840, 947, 1126, 1165
BssSI	CACGAG	2 cut(s)	219, 867
Bst2BI	CACGAG	2 cut(s)	219, 867
Bst2UI	CCWGG	3 cut(s)	466, 900, 909
Bst4CI	ACNGT	3 cut(s)	581, 770, 1027
BstAPI	GCANNNNNTGC	2 cut(s)	557, 941
BstBAI	YACGTR	1 cut(s)	809
BstC8I	GCNNGC	1 cut(s)	1084
BstDEI	CTNAG	2 cut(s)	229, 930
BstF5I	GGATG	4 cut(s)	10, 862, 904, 1162
BstFNI	CGCG	1 cut(s)	845
BstKTI	GATC	8 cut(s)	115, 265, 616, 777, 843, 950, 1129, 1168
BstMAI	GTCTC	1 cut(s)	995
BstMBI	GATC	8 cut(s)	112, 262, 613, 774, 840, 947, 1126, 1165
BstMWI	GCNNNNNNNGC	9 cut(s)	67, 266, 299, 302, 308, 542, 557, 941, 1065
BstNI	CCWGG	3 cut(s)	466, 900, 909
BstNSI	RCATGY	2 cut(s)	995, 1082
BstSCI	CCNGG	3 cut(s)	464, 898, 907
BstSFI	CTRYAG	1 cut(s)	174
BstUI	CGCG	1 cut(s)	845
BstV1I	GCAGC	4 cut(s)	175, 280, 289, 548
BstX2I	RGATCY	4 cut(s)	613, 774, 947, 1126
BstYI	RGATCY	4 cut(s)	613, 774, 947, 1126
BsuRI	GGCC	5 cut(s)	462, 803, 912, 1109, 1203
BtsCI	GGATG	4 cut(s)	10, 862, 904, 1162
BtsIMutI	CAGTG	2 cut(s)	608, 974
Cac8I	GCNNGC	1 cut(s)	1084
CaiI	CAGNNNCTG	2 cut(s)	610, 950
Cfr13I	GGNCC	4 cut(s)	185, 461, 1183, 1202
CviAII	CATG	7 cut(s)	548, 554, 676, 992, 1072, 1079, 1187
DdeI	CTNAG	2 cut(s)	229, 930
DpnI	GATC	8 cut(s)	114, 264, 615, 776, 842, 949, 1128, 1167
DpnII	GATC	8 cut(s)	112, 262, 613, 774, 840, 947, 1126, 1165
DraIII	CACNNNGTG	1 cut(s)	557
EaeI	YGGCCR	1 cut(s)	910
Eco47I	GGWCC	2 cut(s)	185, 1183
Eco57I	CTGAAG	2 cut(s)	1000, 1143
EcoRII	CCWGG	3 cut(s)	464, 898, 907
FaeI	CATG	7 cut(s)	551, 557, 679, 995, 1075, 1082, 1190
FaqI	GGGAC	4 cut(s)	367, 477, 574, 1033
FatI	CATG	7 cut(s)	547, 553, 675, 991, 1071, 1078, 1186
FauI	CCCGC	1 cut(s)	673
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	4 cut(s)	164, 294, 303, 537
FokI	GGATG	4 cut(s)	17, 849, 891, 1169
Fsp4HI	GCNGC	4 cut(s)	164, 294, 303, 537
FspBI	CTAG	4 cut(s)	201, 282, 617, 689
GluI	GCNGC	4 cut(s)	164, 294, 303, 537
GsuI	CTGGAG	2 cut(s)	366, 423
HaeIII	GGCC	5 cut(s)	462, 803, 912, 1109, 1203
Hin1II	CATG	7 cut(s)	551, 557, 679, 995, 1075, 1082, 1190
HincII	GTYRAC	3 cut(s)	81, 424, 883
HindII	GTYRAC	3 cut(s)	81, 424, 883
HindIII	AAGCTT	3 cut(s)	248, 473, 706
HinfI	GANTC	4 cut(s)	391, 420, 490, 895
HpaI	GTTAAC	1 cut(s)	883
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	5 cut(s)	81, 424, 782, 883, 974
Hpy188I	TCNGA	4 cut(s)	370, 520, 966, 1123
Hpy188III	TCNNGA	1 cut(s)	1000
Hpy8I	GTNNAC	5 cut(s)	81, 424, 782, 883, 974
HpyAV	CCTTC	2 cut(s)	177, 737
HpyCH4III	ACNGT	3 cut(s)	581, 770, 1027
HpyCH4IV	ACGT	1 cut(s)	808
HpyF10VI	GCNNNNNNNGC	9 cut(s)	67, 266, 299, 302, 308, 542, 557, 941, 1065
HpyF3I	CTNAG	2 cut(s)	229, 930
HpySE526I	ACGT	1 cut(s)	808
Hsp92II	CATG	7 cut(s)	551, 557, 679, 995, 1075, 1082, 1190
KspAI	GTTAAC	1 cut(s)	883
Kzo9I	GATC	8 cut(s)	112, 262, 613, 774, 840, 947, 1126, 1165
LmnI	GCTCC	3 cut(s)	58, 620, 763
Lsp1109I	GCAGC	4 cut(s)	175, 280, 289, 548
LweI	GCATC	3 cut(s)	112, 214, 458
MaeI	CTAG	4 cut(s)	201, 282, 617, 689
MaeII	ACGT	1 cut(s)	808
MaeIII	GTNAC	2 cut(s)	600, 1074
MalI	GATC	8 cut(s)	114, 264, 615, 776, 842, 949, 1128, 1167
MboI	GATC	8 cut(s)	112, 262, 613, 774, 840, 947, 1126, 1165
MboII	GAAGA	1 cut(s)	1136
MflI	RGATCY	4 cut(s)	613, 774, 947, 1126
MhlI	GDGCHC	2 cut(s)	14, 271
MluCI	AATT	2 cut(s)	94, 650
MlyI	GAGTC	2 cut(s)	429, 499
MmeI	TCCRAC	2 cut(s)	465, 752
MnlI	CCTC	8 cut(s)	325, 436, 513, 779, 1070, 1099, 1106, 1147
MseI	TTAA	5 cut(s)	159, 696, 792, 873, 882
MslI	CAYNNNNRTG	3 cut(s)	552, 632, 669
MspR9I	CCNGG	3 cut(s)	466, 900, 909
MvaI	CCWGG	3 cut(s)	466, 900, 909
MvnI	CGCG	1 cut(s)	845
MwoI	GCNNNNNNNGC	9 cut(s)	67, 266, 299, 302, 308, 542, 557, 941, 1065
NdeII	GATC	8 cut(s)	112, 262, 613, 774, 840, 947, 1126, 1165
NlaIII	CATG	7 cut(s)	551, 557, 679, 995, 1075, 1082, 1190
NlaIV	GGNNCC	1 cut(s)	463
NmeAIII	GCCGAG	1 cut(s)	620
NmuCI	GTSAC	2 cut(s)	600, 1074
NspI	RCATGY	2 cut(s)	995, 1082
PfeI	GAWTC	2 cut(s)	391, 895
PflMI	CCANNNNNTGG	1 cut(s)	401
PkrI	GCNGC	4 cut(s)	165, 295, 304, 538
PleI	GAGTC	2 cut(s)	428, 498
PpsI	GAGTC	2 cut(s)	428, 498
Ppu21I	YACGTR	1 cut(s)	809
PsiI	TTATAA	1 cut(s)	1055
Psp6I	CCWGG	3 cut(s)	464, 898, 907
PspGI	CCWGG	3 cut(s)	464, 898, 907
PspN4I	GGNNCC	1 cut(s)	463
PspPI	GGNCC	4 cut(s)	185, 461, 1183, 1202
PstNI	CAGNNNCTG	2 cut(s)	610, 950
PsuI	RGATCY	4 cut(s)	613, 774, 947, 1126
RseI	CAYNNNNRTG	3 cut(s)	552, 632, 669
SalI	GTCGAC	1 cut(s)	79
SaqAI	TTAA	5 cut(s)	159, 696, 792, 873, 882
SatI	GCNGC	4 cut(s)	164, 294, 303, 537
Sau3AI	GATC	8 cut(s)	112, 262, 613, 774, 840, 947, 1126, 1165
Sau96I	GGNCC	4 cut(s)	185, 461, 1183, 1202
SchI	GAGTC	2 cut(s)	429, 499
ScrFI	CCNGG	3 cut(s)	466, 900, 909
SduI	GDGCHC	2 cut(s)	14, 271
SfaNI	GCATC	3 cut(s)	112, 214, 458
SfcI	CTRYAG	1 cut(s)	174
SinI	GGWCC	2 cut(s)	185, 1183
SmiMI	CAYNNNNRTG	3 cut(s)	552, 632, 669
SpeI	ACTAGT	1 cut(s)	281
Sse9I	AATT	2 cut(s)	94, 650
SsiI	CCGC	3 cut(s)	207, 680, 845
SspMI	CTAG	4 cut(s)	201, 282, 617, 689
StyD4I	CCNGG	3 cut(s)	464, 898, 907
TaaI	ACNGT	3 cut(s)	581, 770, 1027
TaiI	ACGT	1 cut(s)	811
TaqI	TCGA	5 cut(s)	80, 99, 265, 505, 999
TaqII	GACCGA	1 cut(s)	387
TasI	AATT	2 cut(s)	94, 650
TfiI	GAWTC	2 cut(s)	391, 895
Tru1I	TTAA	5 cut(s)	159, 696, 792, 873, 882
Tru9I	TTAA	5 cut(s)	159, 696, 792, 873, 882
TscAI	CASTG	2 cut(s)	615, 981
TseFI	GTSAC	2 cut(s)	600, 1074
TseI	GCWGC	4 cut(s)	163, 293, 302, 536
Tsp45I	GTSAC	2 cut(s)	600, 1074
TspDTI	ATGAA	3 cut(s)	107, 143, 1060
TspRI	CASTG	2 cut(s)	615, 981
Van91I	CCANNNNNTGG	1 cut(s)	401
VpaK11BI	GGWCC	2 cut(s)	185, 1183
XapI	RAATTY	2 cut(s)	94, 650
XceI	RCATGY	2 cut(s)	995, 1082
XcmI	CCANNNNNNNNNTGG	1 cut(s)	768
XmiI	GTMKAC	1 cut(s)	80
XspI	CTAG	4 cut(s)	201, 282, 617, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.