Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006334

Physical Location & Seq

Genomic Coordinates Reverse (-)

50179053 .. 50186993

Gene Structure 7941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00118630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGCGGCGGCTTCTTCTTCTCTCTGTCTTCGGCCTAGTTCTCTCGCCATTGATCTCAACGACGTTGGTTCAACTCCTGGCAAGTTTGTGGCAAGTTTTGGGAGTCCTAAGGTGCGTTTGGGGCTCAAAAAGACATTCAAAGTGAACTGTTCGATAGACAGAGAGATGGATGTGAGCACTTCAGCTATGGTTGATGGCGTGGCTGACTGCTTGAATGAGATGGAGCTAAAAGAGCCAAGTATGTCGACAATGCTGATGAATTTCGACAACAAGTTTGATCCTTACGATGCAATGAATACGCCACTCTACCAAACAGCTACTTTTAAGCAGGAAGAAGCTAGTGGTTCAGTCAAGCCTTCTGCTACAGAAAATGGTCCTTACGATTATACTAGAAGCGGAAATCCTACACGAGATGCCTTAGAAAGCATTTTGGCAAAGCTTGATAAGGCAGATCGAGCACTTTGTTTCACTAGTGGAATGGCTGCTTTGGCTGCTGTTGCTCATCTTGTAGGAACAGGAGAGGAGATTGTTGCTGGAGATGACCTGTATGGGGGTTCTGACCGATTGTTGTCCCAAGTGATTCCAAAAACTGGAGTTGTGGTGAAACGAGTCAACACAAGTGATTTAGATGAGGTTGCATCTGCTATTGGCCCCTGGACGAAGCTTGTTTGGTTGGAGAGTCCCACCAATCCTCGACAAATAGTTTCTGATATTCGCAAAATAGCAGCAATGGCTCATGCACATGGTGCTATTTTGCTGGTGGATAACAGTATAATGTCCCCTGTATTGTCACAGCCACTGGATCTAGGAGCAGACATTGTTATGCACTCGGCGACAAAATTTATTGCTGGACATAGTGATGTCATGGCGGGTGTTCTAGCTGTTAAAGGAGAAAGCTTGGCAGAACAGCTTTATTTCTTACAAAATGCAGAAGGCTCTGGGTTAGCTCCATTTGACTGTTGGATCTGTTTACGAGGAGTTAAAACAATGGCCTTACGTGTTGAGAAGCAACAGGACAATGCTCAAAAGATTGCGGAGTTTCTGGCTTCCCATCCACGAGTTAAGAAAGTTAACTATGCAGGGATTCCTGGTCATCCTGGCCGTGCCTTGCATTATTCTCAGGCAAAGGGTGCAGGATCTGTATTGAGCTTTCTGACAGGTTCACTGGCATTATCAAAGCATGTTGTCGAGACTACCAAATACTTCAGTATAACTGTCAGTTTTGGGGAGTGTGAAGTCCCTTATAAGCCTCCCTGCTTCATGTCACATGCAAGCATACCATCTGCCGTGCGTGAGGCCAGAGGTCTATCTGAAGATCTTGTTCGTATTTCTGTGGGGATTGAGGATGTGAATGATCTCATTGCTGATTTGGACCATGCACTTCAAACTGGCCCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0003962 GO:0004121 GO:0004123 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006555 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009069 GO:0009070 GO:0009086 GO:0009092 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0017144 GO:0019279 GO:0019343 GO:0019344 GO:0019346 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0050667 GO:0070279 GO:0071265 GO:0071266 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00450 ko01100 ko01110 ko01230 map00270 map00450 map01100 map01110 map01230

Pfam Domains

Protein Families

Cys_Met_Meta_PP

Protein Analysis

466

Amino Acids

49.79

Weight (kDa)

5.61

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cys_Met_Meta_PP	PF01053	83 - 462	3.7e-140	Cys/Met metabolism PLP-dependent enzyme
Aminotran_5	PF00266	171 - 283	4.1e-06	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57050 AT3G57050 AT3G57050 AT3G57050 AT3G57050
fragaria_vesca	FvH4_3g30150 FvH4_3g30150 FvH4_3g30150 FvH4_3g30150 FvH4_3g30150
malus_domestica	MD12G1093700.v1.1
prunus_persica	Prupe.7G042400_v2.0.a1 Prupe.7G042400_v2.0.a1 Prupe.7G042400_v2.0.a1
pyrus_communis	pycom12g07890
rosa_chinensis	RchiOBHm_Chr2g0125281
rosa_laevigata	RLG00000018853
rosa_multiflora	Rmu_sc0003505.1_g000036
rosa_roxburghii	Rroxscaffold_2G00118120 Rroxscaffold_2G00118630
rosa_rugosa	Rorug02G0256500 Rorug02G0256600
rosa_samantha	Rh2AG314800 Rh2BG322900 Rh2CG304900 Rh2DG341100
rosa_wichuraiana	Rw2G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1245
AccB7I	CCANNNNNTGG	1 cut(s)	590
AccI	GTMKAC	1 cut(s)	245
AciI	CCGC	5 cut(s)	5, 8, 396, 869, 1034
AclWI	GGATC	4 cut(s)	272, 810, 971, 1144
AcoI	YGGCCR	1 cut(s)	1099
AcsI	RAATTY	2 cut(s)	259, 839
AcuI	CTGAAG	3 cut(s)	165, 1189, 1332
AdeI	CACNNNGTG	1 cut(s)	746
AfiI	CCNNNNNNNGG	2 cut(s)	550, 590
AflIII	ACRYGT	1 cut(s)	997
AgsI	TTSAA	4 cut(s)	72, 139, 214, 1385
AhlI	ACTAGT	1 cut(s)	470
AjnI	CCWGG	4 cut(s)	76, 653, 1087, 1096
Alw21I	GWGCWC	2 cut(s)	179, 460
Alw26I	GTCTC	1 cut(s)	1184
AlwI	GGATC	4 cut(s)	272, 810, 971, 1144
AlwNI	CAGNNNCTG	2 cut(s)	799, 1139
AoxI	GGCC	6 cut(s)	32, 649, 990, 1099, 1296, 1390
ApeKI	GCWGC	3 cut(s)	482, 491, 725
ApoI	RAATTY	2 cut(s)	259, 839
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AspS9I	GGNCC	4 cut(s)	374, 650, 1372, 1391
AsuHPI	GGTGA	1 cut(s)	613
AvaII	GGWCC	2 cut(s)	374, 1372
AxyI	CCTNAGG	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	126
BauI	CACGAG	2 cut(s)	408, 1056
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	2 cut(s)	179, 460
BbvI	GCAGC	3 cut(s)	469, 478, 737
BccI	CCATC	5 cut(s)	160, 188, 214, 1059, 1288
BceAI	ACGGC	2 cut(s)	1086, 1271
BciT130I	CCWGG	4 cut(s)	78, 655, 1089, 1098
BcoDI	GTCTC	1 cut(s)	1184
BcuI	ACTAGT	1 cut(s)	470
BfaI	CTAG	6 cut(s)	36, 339, 390, 471, 806, 878
BfmI	CTRYAG	1 cut(s)	363
BglII	AGATCT	1 cut(s)	1315
BisI	GCNGC	5 cut(s)	6, 9, 483, 492, 726
BlsI	GCNGC	5 cut(s)	7, 10, 484, 493, 727
Bme1390I	CCNGG	4 cut(s)	78, 655, 1089, 1098
Bme18I	GGWCC	2 cut(s)	374, 1372
BmgT120I	GGNCC	4 cut(s)	374, 650, 1372, 1391
BmiI	GGNNCC	1 cut(s)	652
BmrFI	CCNGG	4 cut(s)	78, 655, 1089, 1098
BmsI	GCATC	3 cut(s)	277, 403, 647
BpiI	GAAGAC	1 cut(s)	20
BpmI	CTGGAG	2 cut(s)	555, 612
BsaAI	YACGTR	1 cut(s)	998
BsaJI	CCNNGG	1 cut(s)	653
BsaXI	ACNNNNNCTCC	2 cut(s)	585, 615
Bsc4I	CCNNNNNNNGG	2 cut(s)	550, 590
Bse1I	ACTGG	4 cut(s)	595, 804, 1170, 1393
Bse21I	CCTNAGG	1 cut(s)	108
Bse3DI	GCAATG	3 cut(s)	297, 735, 1359
BseBI	CCWGG	4 cut(s)	78, 655, 1089, 1098
BseDI	CCNNGG	1 cut(s)	653
BseGI	GGATG	4 cut(s)	175, 1051, 1093, 1351
BseLI	CCNNNNNNNGG	2 cut(s)	550, 590
BseMI	GCAATG	3 cut(s)	297, 735, 1359
BseMII	CTCAG	1 cut(s)	1133
BseNI	ACTGG	4 cut(s)	595, 804, 1170, 1393
BseRI	GAGGAG	2 cut(s)	536, 990
BseXI	GCAGC	3 cut(s)	469, 478, 737
BsgI	GTGCAG	1 cut(s)	1152
BshFI	GGCC	6 cut(s)	34, 651, 992, 1101, 1298, 1392
BsiHKAI	GWGCWC	2 cut(s)	179, 460
BslFI	GGGAC	4 cut(s)	556, 666, 763, 1223
BslI	CCNNNNNNNGG	2 cut(s)	550, 590
BsmAI	GTCTC	1 cut(s)	1184
BsmFI	GGGAC	4 cut(s)	556, 666, 763, 1223
BsnI	GGCC	6 cut(s)	34, 651, 992, 1101, 1298, 1392
Bsp1286I	GDGCHC	3 cut(s)	126, 179, 460
Bsp143I	GATC	8 cut(s)	52, 277, 451, 802, 963, 1136, 1315, 1354
BspACI	CCGC	5 cut(s)	5, 8, 396, 869, 1034
BspANI	GGCC	6 cut(s)	34, 651, 992, 1101, 1298, 1392
BspCNI	CTCAG	1 cut(s)	1132
BspLI	GGNNCC	1 cut(s)	652
BspPI	GGATC	4 cut(s)	272, 810, 971, 1144
BsrDI	GCAATG	3 cut(s)	297, 735, 1359
BsrI	ACTGG	4 cut(s)	595, 804, 1170, 1393
BssECI	CCNNGG	1 cut(s)	653
BssMI	GATC	8 cut(s)	52, 277, 451, 802, 963, 1136, 1315, 1354
BssSI	CACGAG	2 cut(s)	408, 1056
Bst2BI	CACGAG	2 cut(s)	408, 1056
Bst2UI	CCWGG	4 cut(s)	78, 655, 1089, 1098
Bst4CI	ACNGT	4 cut(s)	149, 770, 959, 1216
BstAPI	GCANNNNNTGC	2 cut(s)	746, 1130
BstBAI	YACGTR	1 cut(s)	998
BstC8I	GCNNGC	1 cut(s)	1273
BstDEI	CTNAG	3 cut(s)	108, 418, 1119
BstF5I	GGATG	4 cut(s)	175, 1051, 1093, 1351
BstKTI	GATC	8 cut(s)	55, 280, 454, 805, 966, 1139, 1318, 1357
BstMAI	GTCTC	1 cut(s)	1184
BstMBI	GATC	8 cut(s)	52, 277, 451, 802, 963, 1136, 1315, 1354
BstMWI	GCNNNNNNNGC	9 cut(s)	121, 232, 455, 488, 491, 497, 731, 746, 1130
BstNI	CCWGG	4 cut(s)	78, 655, 1089, 1098
BstNSI	RCATGY	2 cut(s)	1184, 1271
BstSCI	CCNGG	4 cut(s)	76, 653, 1087, 1096
BstSFI	CTRYAG	1 cut(s)	363
BstV1I	GCAGC	3 cut(s)	469, 478, 737
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	4 cut(s)	802, 963, 1136, 1315
BstYI	RGATCY	4 cut(s)	802, 963, 1136, 1315
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	6 cut(s)	34, 651, 992, 1101, 1298, 1392
BtsCI	GGATG	4 cut(s)	175, 1051, 1093, 1351
BtsIMutI	CAGTG	2 cut(s)	797, 1163
Cac8I	GCNNGC	1 cut(s)	1273
CaiI	CAGNNNCTG	2 cut(s)	799, 1139
Cfr13I	GGNCC	4 cut(s)	374, 650, 1372, 1391
CviAII	CATG	7 cut(s)	737, 743, 865, 1181, 1261, 1268, 1376
DdeI	CTNAG	3 cut(s)	108, 418, 1119
DpnI	GATC	8 cut(s)	54, 279, 453, 804, 965, 1138, 1317, 1356
DpnII	GATC	8 cut(s)	52, 277, 451, 802, 963, 1136, 1315, 1354
DraIII	CACNNNGTG	1 cut(s)	746
EaeI	YGGCCR	1 cut(s)	1099
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	374, 1372
Eco57I	CTGAAG	3 cut(s)	165, 1189, 1332
Eco81I	CCTNAGG	1 cut(s)	108
EcoRII	CCWGG	4 cut(s)	76, 653, 1087, 1096
EcoT38I	GRGCYC	1 cut(s)	126
FaeI	CATG	7 cut(s)	740, 746, 868, 1184, 1264, 1271, 1379
FaqI	GGGAC	4 cut(s)	556, 666, 763, 1223
FatI	CATG	7 cut(s)	736, 742, 864, 1180, 1260, 1267, 1375
FauI	CCCGC	1 cut(s)	862
FblI	GTMKAC	1 cut(s)	245
Fnu4HI	GCNGC	5 cut(s)	6, 9, 483, 492, 726
FokI	GGATG	4 cut(s)	182, 1038, 1080, 1358
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	5 cut(s)	6, 9, 483, 492, 726
FspBI	CTAG	6 cut(s)	36, 339, 390, 471, 806, 878
GluI	GCNGC	5 cut(s)	6, 9, 483, 492, 726
GsuI	CTGGAG	2 cut(s)	555, 612
HaeIII	GGCC	6 cut(s)	34, 651, 992, 1101, 1298, 1392
Hin1II	CATG	7 cut(s)	740, 746, 868, 1184, 1264, 1271, 1379
HincII	GTYRAC	3 cut(s)	246, 613, 1072
HindII	GTYRAC	3 cut(s)	246, 613, 1072
HindIII	AAGCTT	3 cut(s)	437, 662, 895
HinfI	GANTC	5 cut(s)	103, 580, 609, 679, 1084
HpaI	GTTAAC	1 cut(s)	1072
HphI	GGTGA	1 cut(s)	613
Hpy166II	GTNNAC	6 cut(s)	145, 246, 613, 971, 1072, 1163
Hpy188I	TCNGA	4 cut(s)	559, 709, 1155, 1312
Hpy188III	TCNNGA	1 cut(s)	1189
Hpy8I	GTNNAC	6 cut(s)	145, 246, 613, 971, 1072, 1163
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	366, 926
HpyCH4III	ACNGT	4 cut(s)	149, 770, 959, 1216
HpyCH4IV	ACGT	2 cut(s)	63, 997
HpyF10VI	GCNNNNNNNGC	9 cut(s)	121, 232, 455, 488, 491, 497, 731, 746, 1130
HpyF3I	CTNAG	3 cut(s)	108, 418, 1119
HpySE526I	ACGT	2 cut(s)	63, 997
Hsp92II	CATG	7 cut(s)	740, 746, 868, 1184, 1264, 1271, 1379
KspAI	GTTAAC	1 cut(s)	1072
Kzo9I	GATC	8 cut(s)	52, 277, 451, 802, 963, 1136, 1315, 1354
LmnI	GCTCC	3 cut(s)	223, 809, 952
Lsp1109I	GCAGC	3 cut(s)	469, 478, 737
LweI	GCATC	3 cut(s)	277, 403, 647
MaeI	CTAG	6 cut(s)	36, 339, 390, 471, 806, 878
MaeII	ACGT	2 cut(s)	63, 997
MaeIII	GTNAC	2 cut(s)	789, 1263
MalI	GATC	8 cut(s)	54, 279, 453, 804, 965, 1138, 1317, 1356
MboI	GATC	8 cut(s)	52, 277, 451, 802, 963, 1136, 1315, 1354
MboII	GAAGA	5 cut(s)	6, 9, 20, 344, 1325
MflI	RGATCY	4 cut(s)	802, 963, 1136, 1315
MhlI	GDGCHC	3 cut(s)	126, 179, 460
MluCI	AATT	2 cut(s)	259, 839
MlyI	GAGTC	3 cut(s)	112, 618, 688
MmeI	TCCRAC	2 cut(s)	654, 941
MnlI	CCTC	8 cut(s)	514, 625, 702, 968, 1260, 1288, 1295, 1336
MseI	TTAA	5 cut(s)	324, 885, 981, 1062, 1071
MslI	CAYNNNNRTG	3 cut(s)	741, 821, 858
MspR9I	CCNGG	4 cut(s)	78, 655, 1089, 1098
MvaI	CCWGG	4 cut(s)	78, 655, 1089, 1098
MwoI	GCNNNNNNNGC	9 cut(s)	121, 232, 455, 488, 491, 497, 731, 746, 1130
NdeII	GATC	8 cut(s)	52, 277, 451, 802, 963, 1136, 1315, 1354
NlaIII	CATG	7 cut(s)	740, 746, 868, 1184, 1264, 1271, 1379
NlaIV	GGNNCC	1 cut(s)	652
NmeAIII	GCCGAG	1 cut(s)	809
NmuCI	GTSAC	2 cut(s)	789, 1263
NspI	RCATGY	2 cut(s)	1184, 1271
PfeI	GAWTC	2 cut(s)	580, 1084
PflMI	CCANNNNNTGG	1 cut(s)	590
PkrI	GCNGC	5 cut(s)	7, 10, 484, 493, 727
PleI	GAGTC	3 cut(s)	111, 617, 687
PpsI	GAGTC	3 cut(s)	111, 617, 687
Ppu21I	YACGTR	1 cut(s)	998
PsiI	TTATAA	1 cut(s)	1245
Psp6I	CCWGG	4 cut(s)	76, 653, 1087, 1096
PspGI	CCWGG	4 cut(s)	76, 653, 1087, 1096
PspN4I	GGNNCC	1 cut(s)	652
PspPI	GGNCC	4 cut(s)	374, 650, 1372, 1391
PstNI	CAGNNNCTG	2 cut(s)	799, 1139
PsuI	RGATCY	4 cut(s)	802, 963, 1136, 1315
RseI	CAYNNNNRTG	3 cut(s)	741, 821, 858
SalI	GTCGAC	1 cut(s)	244
SaqAI	TTAA	5 cut(s)	324, 885, 981, 1062, 1071
SatI	GCNGC	5 cut(s)	6, 9, 483, 492, 726
Sau3AI	GATC	8 cut(s)	52, 277, 451, 802, 963, 1136, 1315, 1354
Sau96I	GGNCC	4 cut(s)	374, 650, 1372, 1391
SchI	GAGTC	3 cut(s)	112, 618, 688
ScrFI	CCNGG	4 cut(s)	78, 655, 1089, 1098
SduI	GDGCHC	3 cut(s)	126, 179, 460
SfaNI	GCATC	3 cut(s)	277, 403, 647
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	2 cut(s)	374, 1372
SmiMI	CAYNNNNRTG	3 cut(s)	741, 821, 858
SpeI	ACTAGT	1 cut(s)	470
Sse9I	AATT	2 cut(s)	259, 839
SsiI	CCGC	5 cut(s)	5, 8, 396, 869, 1034
SspMI	CTAG	6 cut(s)	36, 339, 390, 471, 806, 878
StyD4I	CCNGG	4 cut(s)	76, 653, 1087, 1096
TaaI	ACNGT	4 cut(s)	149, 770, 959, 1216
TaiI	ACGT	2 cut(s)	66, 1000
TaqI	TCGA	6 cut(s)	152, 245, 264, 454, 694, 1188
TaqII	GACCGA	1 cut(s)	576
TasI	AATT	2 cut(s)	259, 839
TauI	GCSGC	2 cut(s)	8, 11
TfiI	GAWTC	2 cut(s)	580, 1084
Tru1I	TTAA	5 cut(s)	324, 885, 981, 1062, 1071
Tru9I	TTAA	5 cut(s)	324, 885, 981, 1062, 1071
TscAI	CASTG	2 cut(s)	804, 1170
TseFI	GTSAC	2 cut(s)	789, 1263
TseI	GCWGC	3 cut(s)	482, 491, 725
Tsp45I	GTSAC	2 cut(s)	789, 1263
TspDTI	ATGAA	3 cut(s)	272, 308, 1249
TspRI	CASTG	2 cut(s)	804, 1170
Van91I	CCANNNNNTGG	1 cut(s)	590
VpaK11BI	GGWCC	2 cut(s)	374, 1372
XapI	RAATTY	2 cut(s)	259, 839
XceI	RCATGY	2 cut(s)	1184, 1271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	957
XmiI	GTMKAC	1 cut(s)	245
XspI	CTAG	6 cut(s)	36, 339, 390, 471, 806, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.