Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006334

Physical Location & Seq

Genomic Coordinates Reverse (-)

7814718 .. 7821290

Gene Structure 6573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G042400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGCCGCTTCTTCTTCTCTCTCTTTTAGGCCTCTCCTTAGCTCCCTCGCCACCGATCTCAACGACGTCGGTTTATCGCCTGTGAATTTAGTACCAAGCTTTGGGGATTCCCTCGTGAGTTTTGGGTTAAAAAAGGCAACAACGCTGAGGGGAAAGAGGTTGTTGTTGTCTGGAAATAAATTCAAAGTGAATTGTTCAGCTGACAGAGAGATGGATGTGAGCACTTCAGCTGTGGTTGATGGTGTTGCGGACTGCTTAAATGAAATTGAGCTGAAAGAGCCTAGTATTTCAACAATTCTGATGAATTTCGAGAACAAGTTCGATCCTTACAATGCAATGAATACGCCACTTTACCAAACAGCTACTTTTAAGCAGCCTTCAGCAACAGAAAATGGTCCTTATGATTATACCAGAAGTGGAAATCCCACACGGGATGCCTTGGAAAGCCTTTTGGCAAAGCTTGATAAAGCAGATCGAGCATTTTGTTTCACTAGTGGAATGGCTGCTCTGGCTGCTGTTGCTCATCTTGTAGGGACAGGTGAGGAGATTGTTGCCGGAGACGACCTGTATGGTGGTTCAGATCGGTTACTGTCACAAGTAATTCCAAAGACTGGAGTTGTGGTGAAACGAGTGAACACGAGTGATTTAGATGAAATTGCATCTGCTATTGGCCCCTGGACGAAGCTTGTGTGGCTGGAGAGTCCCACCAATCCTCGACAAATAATTTCTGATATTCGCAAAATAGCAGAGATGGCTCATGCACATGGTGCTATTGTGTTAGTGGATAACAGTATAATGTCCCCTGTATTGTCACAGCCACTGGATCTAGGAGCAGATATTGTTATGCACTCAGCCACTAAGTTTATTGCTGGACATAGTGATGTCATGGCAGGTGTTTTAGCTGTTAAAGGGGATAGCTTGGCAAAACAGCTATATTTCTTACAAAATGCAGAAGGCTCTGGGTTAGCTCCATTTGACTGTTGGATCTGTTTACGAGGAATTAAGACAATGGCCTTACGTGTTGAGAAGCAACAGGACAATGCGCAAAAAATTGCTGAGTTTCTTGCTTCCCATCCACGAGTGACACAAGTTAATTATGCAGGGCTTGCTGATCATCCTGGACGTGCCTTACATTATTCTCAGGCAAAGGGTGCAGGATCTGTATTGAGTTTTCTGACAGGTTCACTGGCATTATCAAAGCATATTGTCGAGACTACCAAATACTTCAGTATAACTGTCAGTTTTGGAAGTGTGAAGTCTCTTATAAGCCTGCCCTGCTTCATGTCTCACGCAAGCATACCATCTGCAGTGCGCGAGGCCAGAGGTCTATCTGAAGATCTTATTCGTATTTCTGTGGGAATCGAGGATGTGAATGATCTGATTGCCGATTTGGACTATGCACTTAAAACCGGCCCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0003962 GO:0004121 GO:0004123 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006555 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009069 GO:0009070 GO:0009086 GO:0009092 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0017144 GO:0019279 GO:0019343 GO:0019344 GO:0019346 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0050667 GO:0070279 GO:0071265 GO:0071266 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00450 ko01100 ko01110 ko01230 map00270 map00450 map01100 map01110 map01230

Pfam Domains

Protein Families

Cys_Met_Meta_PP

Protein Analysis

474

Amino Acids

50.61

Weight (kDa)

5.84

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57050 AT3G57050 AT3G57050 AT3G57050 AT3G57050
fragaria_vesca	FvH4_3g30150 FvH4_3g30150 FvH4_3g30150 FvH4_3g30150 FvH4_3g30150
malus_domestica	MD12G1093700.v1.1
prunus_persica	Prupe.7G042400_v2.0.a1 Prupe.7G042400_v2.0.a1 Prupe.7G042400_v2.0.a1
pyrus_communis	pycom12g07890
rosa_chinensis	RchiOBHm_Chr2g0125281
rosa_laevigata	RLG00000018853
rosa_multiflora	Rmu_sc0003505.1_g000036
rosa_roxburghii	Rroxscaffold_2G00118120 Rroxscaffold_2G00118630
rosa_rugosa	Rorug02G0256500 Rorug02G0256600
rosa_samantha	Rh2AG314800 Rh2BG322900 Rh2CG304900 Rh2DG341100
rosa_wichuraiana	Rw2G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1265
AarI	CACCTGC	1 cut(s)	881
AatII	GACGTC	1 cut(s)	69
Acc16I	TGCGCA	1 cut(s)	1044
Acc36I	ACCTGC	1 cut(s)	881
AccB7I	CCANNNNNTGG	2 cut(s)	101, 611
AccII	CGCG	1 cut(s)	1314
AciI	CCGC	2 cut(s)	6, 248
AclWI	GGATC	4 cut(s)	317, 831, 992, 1165
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	85, 179, 304
AcuI	CTGAAG	4 cut(s)	210, 363, 1210, 1353
AcyI	GRCGYC	1 cut(s)	66
AdeI	CACNNNGTG	1 cut(s)	767
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	2 cut(s)	101, 611
AflIII	ACRYGT	1 cut(s)	1018
AgsI	TTSAA	2 cut(s)	184, 291
AhlI	ACTAGT	1 cut(s)	491
AjiI	CACGTC	1 cut(s)	1124
AjnI	CCWGG	2 cut(s)	674, 1117
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	4 cut(s)	552, 1205, 1263, 1290
AlwI	GGATC	4 cut(s)	317, 831, 992, 1165
AlwNI	CAGNNNCTG	2 cut(s)	820, 1160
AoxI	GGCC	6 cut(s)	3, 29, 670, 1011, 1317, 1411
ApeKI	GCWGC	3 cut(s)	373, 503, 512
ApoI	RAATTY	3 cut(s)	85, 179, 304
Asp700I	GAANNNNTTC	1 cut(s)	317
AspLEI	GCGC	2 cut(s)	1045, 1314
AspS9I	GGNCC	3 cut(s)	395, 671, 1412
AsuHPI	GGTGA	2 cut(s)	551, 634
AvaII	GGWCC	1 cut(s)	395
BauI	CACGAG	3 cut(s)	113, 637, 1077
Bbv12I	GWGCWC	1 cut(s)	224
BbvCI	CCTCAGC	1 cut(s)	146
BbvI	GCAGC	3 cut(s)	385, 490, 499
BccI	CCATC	5 cut(s)	205, 233, 745, 1080, 1309
BciT130I	CCWGG	2 cut(s)	676, 1119
BclI	TGATCA	1 cut(s)	1111
BcoDI	GTCTC	4 cut(s)	552, 1205, 1263, 1290
BcuI	ACTAGT	1 cut(s)	491
BfaI	CTAG	3 cut(s)	282, 492, 827
BfmI	CTRYAG	2 cut(s)	1305, 1418
BfuAI	ACCTGC	1 cut(s)	881
BglII	AGATCT	1 cut(s)	1336
BisI	GCNGC	4 cut(s)	6, 374, 504, 513
BlsI	GCNGC	4 cut(s)	7, 375, 505, 514
Bme1390I	CCNGG	2 cut(s)	676, 1119
Bme18I	GGWCC	1 cut(s)	395
BmgBI	CACGTC	1 cut(s)	1124
BmgT120I	GGNCC	3 cut(s)	395, 671, 1412
BmiI	GGNNCC	1 cut(s)	673
BmrFI	CCNGG	2 cut(s)	676, 1119
BmsI	GCATC	2 cut(s)	424, 668
BpmI	CTGGAG	2 cut(s)	633, 716
Bpu10I	CCTNAGC	2 cut(s)	38, 146
BsaAI	YACGTR	1 cut(s)	1019
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	438, 674
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 611
Bse118I	RCCGGY	1 cut(s)	1409
Bse1I	ACTGG	3 cut(s)	616, 825, 1191
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	676, 1119
BseDI	CCNNGG	2 cut(s)	438, 674
BseGI	GGATG	5 cut(s)	220, 439, 1072, 1114, 1372
BseLI	CCNNNNNNNGG	2 cut(s)	101, 611
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	4 cut(s)	137, 864, 1047, 1154
BseNI	ACTGG	3 cut(s)	616, 825, 1191
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	3 cut(s)	385, 490, 499
BsgI	GTGCAG	1 cut(s)	1173
Bsh1236I	CGCG	1 cut(s)	1314
BshFI	GGCC	6 cut(s)	5, 31, 672, 1013, 1319, 1413
BsiHKAI	GWGCWC	1 cut(s)	224
BsiSI	CCGG	2 cut(s)	555, 1410
BslFI	GGGAC	3 cut(s)	547, 687, 784
BslI	CCNNNNNNNGG	2 cut(s)	101, 611
BsmAI	GTCTC	4 cut(s)	552, 1205, 1263, 1290
BsmBI	CGTCTC	1 cut(s)	552
BsmFI	GGGAC	3 cut(s)	547, 687, 784
BsnI	GGCC	6 cut(s)	5, 31, 672, 1013, 1319, 1413
Bsp1286I	GDGCHC	1 cut(s)	224
BspACI	CCGC	2 cut(s)	6, 248
BspANI	GGCC	6 cut(s)	5, 31, 672, 1013, 1319, 1413
BspCNI	CTCAG	4 cut(s)	138, 863, 1048, 1153
BspFNI	CGCG	1 cut(s)	1314
BspLI	GGNNCC	1 cut(s)	673
BspMAI	CTGCAG	1 cut(s)	1309
BspMI	ACCTGC	1 cut(s)	881
BspPI	GGATC	4 cut(s)	317, 831, 992, 1165
BsrDI	GCAATG	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	1409
BsrI	ACTGG	3 cut(s)	616, 825, 1191
BssAI	RCCGGY	1 cut(s)	1409
BssECI	CCNNGG	2 cut(s)	438, 674
BssNI	GRCGYC	1 cut(s)	66
BssSI	CACGAG	3 cut(s)	113, 637, 1077
BssT1I	CCWWGG	1 cut(s)	438
Bst2BI	CACGAG	3 cut(s)	113, 637, 1077
Bst2UI	CCWGG	2 cut(s)	676, 1119
Bst4CI	ACNGT	4 cut(s)	591, 791, 980, 1237
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	3 cut(s)	767, 1106, 1151
BstBAI	YACGTR	1 cut(s)	1019
BstC8I	GCNNGC	3 cut(s)	1107, 1271, 1294
BstDEI	CTNAG	6 cut(s)	38, 146, 850, 858, 1056, 1140
BstF5I	GGATG	5 cut(s)	220, 439, 1072, 1114, 1372
BstFNI	CGCG	1 cut(s)	1314
BstHHI	GCGC	2 cut(s)	1045, 1314
BstMAI	GTCTC	4 cut(s)	552, 1205, 1263, 1290
BstNI	CCWGG	2 cut(s)	676, 1119
BstSCI	CCNGG	2 cut(s)	674, 1117
BstSFI	CTRYAG	2 cut(s)	1305, 1418
BstUI	CGCG	1 cut(s)	1314
BstV1I	GCAGC	3 cut(s)	385, 490, 499
BstX2I	RGATCY	4 cut(s)	823, 984, 1157, 1336
BstYI	RGATCY	4 cut(s)	823, 984, 1157, 1336
BsuRI	GGCC	6 cut(s)	5, 31, 672, 1013, 1319, 1413
BtrI	CACGTC	1 cut(s)	1124
BtsCI	GGATG	5 cut(s)	220, 439, 1072, 1114, 1372
BtsI	GCAGTG	1 cut(s)	1314
BtsIMutI	CAGTG	3 cut(s)	818, 1184, 1314
BveI	ACCTGC	1 cut(s)	881
Cac8I	GCNNGC	3 cut(s)	1107, 1271, 1294
CaiI	CAGNNNCTG	2 cut(s)	820, 1160
CfoI	GCGC	2 cut(s)	1045, 1314
Cfr10I	RCCGGY	1 cut(s)	1409
Cfr13I	GGNCC	3 cut(s)	395, 671, 1412
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	4 cut(s)	758, 764, 886, 1282
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	6 cut(s)	38, 146, 850, 858, 1056, 1140
DraIII	CACNNNGTG	1 cut(s)	767
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	438
Eco147I	AGGCCT	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	395
Eco57I	CTGAAG	4 cut(s)	210, 363, 1210, 1353
EcoRII	CCWGG	2 cut(s)	674, 1117
EcoT14I	CCWWGG	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	438
Esp3I	CGTCTC	1 cut(s)	552
FaeI	CATG	4 cut(s)	761, 767, 889, 1285
FaqI	GGGAC	3 cut(s)	547, 687, 784
FatI	CATG	4 cut(s)	757, 763, 885, 1281
FbaI	TGATCA	1 cut(s)	1111
Fnu4HI	GCNGC	4 cut(s)	6, 374, 504, 513
FokI	GGATG	5 cut(s)	227, 446, 1059, 1101, 1379
Fsp4HI	GCNGC	4 cut(s)	6, 374, 504, 513
FspBI	CTAG	3 cut(s)	282, 492, 827
FspI	TGCGCA	1 cut(s)	1044
GlaI	GCGC	2 cut(s)	1044, 1313
GluI	GCNGC	4 cut(s)	6, 374, 504, 513
GsuI	CTGGAG	2 cut(s)	633, 716
HaeIII	GGCC	6 cut(s)	5, 31, 672, 1013, 1319, 1413
HapII	CCGG	2 cut(s)	555, 1410
HhaI	GCGC	2 cut(s)	1045, 1314
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	4 cut(s)	761, 767, 889, 1285
Hin6I	GCGC	2 cut(s)	1043, 1312
HinP1I	GCGC	2 cut(s)	1043, 1312
HindIII	AAGCTT	3 cut(s)	97, 458, 683
HinfI	GANTC	3 cut(s)	107, 700, 1359
HpaII	CCGG	2 cut(s)	555, 1410
HphI	GGTGA	2 cut(s)	551, 634
Hpy166II	GTNNAC	3 cut(s)	634, 992, 1184
Hpy188I	TCNGA	6 cut(s)	300, 580, 730, 1176, 1333, 1380
Hpy188III	TCNNGA	4 cut(s)	115, 171, 310, 1210
Hpy8I	GTNNAC	3 cut(s)	634, 992, 1184
Hpy99I	CGWCG	2 cut(s)	68, 71
HpyAV	CCTTC	2 cut(s)	387, 947
HpyCH4III	ACNGT	4 cut(s)	591, 791, 980, 1237
HpyCH4IV	ACGT	3 cut(s)	66, 1018, 1123
HpyCH4V	TGCA	9 cut(s)	335, 659, 761, 847, 950, 1100, 1154, 1307, 1400
HpyF3I	CTNAG	6 cut(s)	38, 146, 850, 858, 1056, 1140
HpySE526I	ACGT	3 cut(s)	66, 1018, 1123
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	4 cut(s)	761, 767, 889, 1285
HspAI	GCGC	2 cut(s)	1043, 1312
Ksp22I	TGATCA	1 cut(s)	1111
LmnI	GCTCC	3 cut(s)	47, 830, 973
Lsp1109I	GCAGC	3 cut(s)	385, 490, 499
LweI	GCATC	2 cut(s)	424, 668
MaeI	CTAG	3 cut(s)	282, 492, 827
MaeII	ACGT	3 cut(s)	66, 1018, 1123
MaeIII	GTNAC	4 cut(s)	585, 591, 810, 1081
MboII	GAAGA	3 cut(s)	3, 6, 1346
MflI	RGATCY	4 cut(s)	823, 984, 1157, 1336
MhlI	GDGCHC	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	709
MmeI	TCCRAC	1 cut(s)	962
MroXI	GAANNNNTTC	1 cut(s)	317
MseI	TTAA	7 cut(s)	128, 257, 369, 906, 1002, 1092, 1404
MslI	CAYNNNNRTG	2 cut(s)	762, 879
MspA1I	CMGCKG	2 cut(s)	200, 230
MspI	CCGG	2 cut(s)	555, 1410
MspR9I	CCNGG	2 cut(s)	676, 1119
MvaI	CCWGG	2 cut(s)	676, 1119
MvnI	CGCG	1 cut(s)	1314
NlaIII	CATG	4 cut(s)	761, 767, 889, 1285
NlaIV	GGNNCC	1 cut(s)	673
NmuCI	GTSAC	3 cut(s)	591, 810, 1081
NsbI	TGCGCA	1 cut(s)	1044
PaqCI	CACCTGC	1 cut(s)	881
PceI	AGGCCT	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	107, 1359
PflMI	CCANNNNNTGG	2 cut(s)	101, 611
PfoI	TCCNGGA	1 cut(s)	1117
PkrI	GCNGC	4 cut(s)	7, 375, 505, 514
PleI	GAGTC	1 cut(s)	708
PpsI	GAGTC	1 cut(s)	708
Ppu21I	YACGTR	1 cut(s)	1019
PsiI	TTATAA	1 cut(s)	1265
Psp6I	CCWGG	2 cut(s)	674, 1117
PspGI	CCWGG	2 cut(s)	674, 1117
PspN4I	GGNNCC	1 cut(s)	673
PspPI	GGNCC	3 cut(s)	395, 671, 1412
PstI	CTGCAG	1 cut(s)	1309
PstNI	CAGNNNCTG	2 cut(s)	820, 1160
PsuI	RGATCY	4 cut(s)	823, 984, 1157, 1336
PvuII	CAGCTG	2 cut(s)	200, 230
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
RseI	CAYNNNNRTG	2 cut(s)	762, 879
SaqAI	TTAA	7 cut(s)	128, 257, 369, 906, 1002, 1092, 1404
SatI	GCNGC	4 cut(s)	6, 374, 504, 513
Sau96I	GGNCC	3 cut(s)	395, 671, 1412
SchI	GAGTC	1 cut(s)	709
ScrFI	CCNGG	2 cut(s)	676, 1119
SduI	GDGCHC	1 cut(s)	224
SfaNI	GCATC	2 cut(s)	424, 668
SfcI	CTRYAG	2 cut(s)	1305, 1418
SinI	GGWCC	1 cut(s)	395
SmiMI	CAYNNNNRTG	2 cut(s)	762, 879
SpeI	ACTAGT	1 cut(s)	491
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	2 cut(s)	6, 248
SspMI	CTAG	3 cut(s)	282, 492, 827
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	2 cut(s)	674, 1117
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	4 cut(s)	591, 791, 980, 1237
TaiI	ACGT	3 cut(s)	69, 1021, 1126
TaqI	TCGA	6 cut(s)	309, 321, 475, 715, 1209, 1362
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	107, 1359
Tru1I	TTAA	7 cut(s)	128, 257, 369, 906, 1002, 1092, 1404
Tru9I	TTAA	7 cut(s)	128, 257, 369, 906, 1002, 1092, 1404
TscAI	CASTG	3 cut(s)	825, 1191, 1314
TseFI	GTSAC	3 cut(s)	591, 810, 1081
TseI	GCWGC	3 cut(s)	373, 503, 512
Tsp45I	GTSAC	3 cut(s)	591, 810, 1081
TspDTI	ATGAA	5 cut(s)	276, 317, 353, 666, 1270
TspRI	CASTG	3 cut(s)	825, 1191, 1314
Van91I	CCANNNNNTGG	2 cut(s)	101, 611
VpaK11BI	GGWCC	1 cut(s)	395
XapI	RAATTY	3 cut(s)	85, 179, 304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	978
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	3 cut(s)	282, 492, 827
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.