AT3G57600

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015150
Physical Location & Seq
Forward (+)
21332774 .. 21333918
1145 bp
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UTR
Exon/CDS
Intron
AT3G57600.1

Sequence Viewer

Length: 834 bp
ATGGAGAAATCATCCTCAATGAAACAATGGAAGAAGGGTCCTGCTCGGGGTAAAGGCGGTCCACAAAACGCTCTTTGTCAGTACCGTGGAGTCAGGCAAAGGACTTGGGGCAAATGGGTGGCTGAGATCAGAGAGCCCAAGAAGAGGGCAAGACTTTGGCTTGGCTCTTTCGCTACAGCTGAAGAAGCAGCTATGGCTTATGATGAGGCTGCCTTGAAACTCTATGGGCACGACGCATACCTCAACTTACCTCATCTTCAGCGGAATACAAGACCTTCTCTGAGTAACTCTCAGAGGTTCAAATGGGTACCTTCAAGGAAGTTTATATCTATGTTTCCTTCATGTGGTATGCTAAACGTGAATGCTCAGCCTAGTGTTCACATAATCCAGCAAAGACTAGAAGAACTCAAGAAAACTGGACTTTTATCTCAATCCTATTCTTCTAGTTCTTCCTCCACCGAATCAAAAACTAATACTAGCTTTCTTGATGAGAAGACCAGCAAGGGAGAAACAGACAATATGTTCGAAGGTGGTGATCAGAAGAAACCAGAGATCGACCTGACCGAGTTTCTTCAGCAACTAGGAATCTTGAAGGATGAAAATGAAGCAGAACCAAGTGAGGTAGCAGAGTGTCATTCCCCTCCACCATGGAACGAGCAAGAAGAAACTGGAAGTCCTTTCAGAACTGAGAATTTCAGCTGGGATACCCTGATCGAGATGCCAAGAAGTGAAACCACAACTATGCAATTTGACTCCAGCAACTTCGGAAGCTATGATTTTGAGGATGATGTATCCTTCCCTTCCATCTGGGACTACTACGGAAGCTTAGATTGA

Protein Analysis

277

Amino Acids

31.57

Weight (kDa)

5.34

Isoelectric Point (pI)

59.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 27 - 77 1.6e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57600
fragaria_vesca FvH4_6g23290
malus_domestica MD12G1067600.v1.1
prunus_persica Prupe.7G066700_v2.0.a1
pyrus_communis pycom12g05990 pycom14g05600
rosa_chinensis RchiOBHm_Chr3g0481251
rosa_laevigata RLG00000023409
rosa_multiflora Rmu_co8499509.1_g000001 Rmu_sc0000064.1_g000006
rosa_roxburghii Rroxscaffold_6G00400570
rosa_rugosa Rorug03G0190600
rosa_samantha Rh3AG241500 Rh3CG272100 Rh3DG268500
rosa_wichuraiana Rw3G021570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 307
AccB1I GGYRCC 1 cut(s) 307
AciI CCGC 2 cut(s) 57, 262
AcsI RAATTY 1 cut(s) 691
AcuI CTGAAG 3 cut(s) 201, 242, 557
AfaI GTAC 2 cut(s) 83, 309
AfiI CCNNNNNNNGG 3 cut(s) 47, 144, 344
AgsI TTSAA 4 cut(s) 217, 301, 315, 592
AluBI AGCT 6 cut(s) 179, 191, 480, 699, 771, 825
AluI AGCT 6 cut(s) 179, 191, 480, 699, 771, 825
Ama87I CYCGRG 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 188, 209
ApoI RAATTY 1 cut(s) 691
ArsI GACNNNNNNTTYG 2 cut(s) 506, 538
Asp718I GGTACC 1 cut(s) 307
AspS9I GGNCC 2 cut(s) 38, 59
AsuHPI GGTGA 1 cut(s) 545
AsuII TTCGAA 1 cut(s) 525
AvaI CYCGRG 1 cut(s) 45
AvaII GGWCC 2 cut(s) 38, 59
BaeGI GKGCMC 1 cut(s) 231
BanI GGYRCC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 500
BbvI GCAGC 2 cut(s) 196, 200
BccI CCATC 1 cut(s) 812
BciVI GTATCC 2 cut(s) 697, 802
BclI TGATCA 1 cut(s) 535
BfaI CTAG 5 cut(s) 372, 398, 444, 477, 581
BfmI CTRYAG 1 cut(s) 174
BfuI GTATCC 2 cut(s) 697, 802
BisI GCNGC 2 cut(s) 189, 210
BlpI GCTNAGC 1 cut(s) 366
BlsI GCNGC 2 cut(s) 190, 211
Bme18I GGWCC 2 cut(s) 38, 59
BmeT110I CYCGRG 1 cut(s) 45
BmgT120I GGNCC 2 cut(s) 38, 59
BmiI GGNNCC 2 cut(s) 39, 309
BmsI GCATC 1 cut(s) 708
BpiI GAAGAC 1 cut(s) 500
BplI GAGNNNNNCTC 2 cut(s) 274, 306
BpmI CTGGAG 1 cut(s) 739
Bpu1102I GCTNAGC 1 cut(s) 366
Bpu14I TTCGAA 1 cut(s) 525
BpuEI CTTGAG 1 cut(s) 392
BsaJI CCNNGG 2 cut(s) 85, 647
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 144, 344
Bse1I ACTGG 2 cut(s) 421, 673
BseDI CCNNGG 2 cut(s) 85, 647
BseGI GGATG 3 cut(s) 11, 601, 790
BseLI CCNNNNNNNGG 3 cut(s) 47, 144, 344
BseMII CTCAG 5 cut(s) 114, 272, 305, 380, 678
BseNI ACTGG 2 cut(s) 421, 673
BseSI GKGCMC 1 cut(s) 231
BseXI GCAGC 2 cut(s) 196, 200
BseYI CCCAGC 1 cut(s) 699
BshNI GGYRCC 1 cut(s) 307
BsiHKCI CYCGRG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 824
BslI CCNNNNNNNGG 3 cut(s) 47, 144, 344
BsmFI GGGAC 1 cut(s) 824
BsmI GAATGC 1 cut(s) 367
BsoBI CYCGRG 1 cut(s) 45
Bsp119I TTCGAA 1 cut(s) 525
Bsp1286I GDGCHC 2 cut(s) 138, 231
Bsp143I GATC 4 cut(s) 126, 535, 552, 711
Bsp1720I GCTNAGC 1 cut(s) 366
Bsp19I CCATGG 1 cut(s) 647
BspACI CCGC 2 cut(s) 57, 262
BspCNI CTCAG 5 cut(s) 115, 273, 304, 379, 679
BspLI GGNNCC 2 cut(s) 39, 309
BspT104I TTCGAA 1 cut(s) 525
BspT107I GGYRCC 1 cut(s) 307
BsrI ACTGG 2 cut(s) 421, 673
BssECI CCNNGG 2 cut(s) 85, 647
BssMI GATC 4 cut(s) 126, 535, 552, 711
BssT1I CCWWGG 1 cut(s) 647
Bst4CI ACNGT 1 cut(s) 86
Bst6I CTCTTC 1 cut(s) 137
BstBI TTCGAA 1 cut(s) 525
BstDEI CTNAG 6 cut(s) 123, 281, 291, 366, 687, 826
BstDSI CCRYGG 2 cut(s) 85, 647
BstF5I GGATG 3 cut(s) 11, 601, 790
BstKTI GATC 4 cut(s) 129, 538, 555, 714
BstMBI GATC 4 cut(s) 126, 535, 552, 711
BstMWI GCNNNNNNNGC 2 cut(s) 185, 194
BstSFI CTRYAG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 231
BstV1I GCAGC 2 cut(s) 196, 200
BstV2I GAAGAC 1 cut(s) 500
BsuI GTATCC 2 cut(s) 697, 802
BtgI CCRYGG 2 cut(s) 85, 647
BtsCI GGATG 3 cut(s) 11, 601, 790
Cfr13I GGNCC 2 cut(s) 38, 59
CseI GACGC 1 cut(s) 242
Csp6I GTAC 2 cut(s) 82, 308
CviAII CATG 2 cut(s) 342, 648
CviQI GTAC 2 cut(s) 82, 308
DdeI CTNAG 6 cut(s) 123, 281, 291, 366, 687, 826
DpnI GATC 4 cut(s) 128, 537, 554, 713
DpnII GATC 4 cut(s) 126, 535, 552, 711
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 647
Eco24I GRGCYC 1 cut(s) 138
Eco47I GGWCC 2 cut(s) 38, 59
Eco57I CTGAAG 3 cut(s) 201, 242, 557
Eco88I CYCGRG 1 cut(s) 45
EcoO109I RGGNCCY 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 647
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 647
FaeI CATG 2 cut(s) 345, 651
FaqI GGGAC 1 cut(s) 824
FatI CATG 2 cut(s) 341, 647
FbaI TGATCA 1 cut(s) 535
Fnu4HI GCNGC 2 cut(s) 189, 210
FokI GGATG 2 cut(s) 608, 797
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 2 cut(s) 189, 210
FspBI CTAG 5 cut(s) 372, 398, 444, 477, 581
GluI GCNGC 2 cut(s) 189, 210
GsaI CCCAGC 1 cut(s) 703
GsuI CTGGAG 1 cut(s) 739
HgaI GACGC 1 cut(s) 242
Hin1II CATG 2 cut(s) 345, 651
HindIII AAGCTT 1 cut(s) 823
HinfI GANTC 4 cut(s) 90, 461, 585, 752
HphI GGTGA 1 cut(s) 545
Hpy166II GTNNAC 2 cut(s) 62, 379
Hpy188I TCNGA 6 cut(s) 131, 282, 294, 540, 683, 767
Hpy188III TCNNGA 4 cut(s) 409, 485, 589, 715
Hpy8I GTNNAC 2 cut(s) 62, 379
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 8 cut(s) 28, 285, 321, 348, 521, 586, 805, 810
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 1 cut(s) 745
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 194
HpyF3I CTNAG 6 cut(s) 123, 281, 291, 366, 687, 826
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 2 cut(s) 345, 651
KpnI GGTACC 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 4 cut(s) 126, 535, 552, 711
Lsp1109I GCAGC 2 cut(s) 196, 200
LweI GCATC 1 cut(s) 708
MaeI CTAG 5 cut(s) 372, 398, 444, 477, 581
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 284
MalI GATC 4 cut(s) 128, 537, 554, 713
MboI GATC 4 cut(s) 126, 535, 552, 711
MhlI GDGCHC 2 cut(s) 138, 231
MluCI AATT 2 cut(s) 691, 746
MlyI GAGTC 2 cut(s) 99, 746
MslI CAYNNNNRTG 1 cut(s) 740
MspA1I CMGCKG 3 cut(s) 179, 262, 699
Mva1269I GAATGC 1 cut(s) 367
MwoI GCNNNNNNNGC 2 cut(s) 185, 194
NcoI CCATGG 1 cut(s) 647
NdeII GATC 4 cut(s) 126, 535, 552, 711
NlaIII CATG 2 cut(s) 345, 651
NlaIV GGNNCC 2 cut(s) 39, 309
NspV TTCGAA 1 cut(s) 525
PcsI WCGNNNNNNNCGW 1 cut(s) 561
PctI GAATGC 1 cut(s) 367
PfeI GAWTC 2 cut(s) 461, 585
PkrI GCNGC 2 cut(s) 190, 211
PleI GAGTC 2 cut(s) 98, 746
PpsI GAGTC 2 cut(s) 98, 746
PpuMI RGGWCCY 1 cut(s) 38
Psp5II RGGWCCY 1 cut(s) 38
PspFI CCCAGC 1 cut(s) 699
PspN4I GGNNCC 2 cut(s) 39, 309
PspPI GGNCC 2 cut(s) 38, 59
PspPPI RGGWCCY 1 cut(s) 38
PvuII CAGCTG 2 cut(s) 179, 699
RsaI GTAC 2 cut(s) 83, 309
RsaNI GTAC 2 cut(s) 82, 308
RseI CAYNNNNRTG 1 cut(s) 740
SatI GCNGC 2 cut(s) 189, 210
Sau3AI GATC 4 cut(s) 126, 535, 552, 711
Sau96I GGNCC 2 cut(s) 38, 59
SchI GAGTC 2 cut(s) 99, 746
SduI GDGCHC 2 cut(s) 138, 231
SfaNI GCATC 1 cut(s) 708
SfcI CTRYAG 1 cut(s) 174
SfuI TTCGAA 1 cut(s) 525
SinI GGWCC 2 cut(s) 38, 59
SmiMI CAYNNNNRTG 1 cut(s) 740
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 2 cut(s) 691, 746
SsiI CCGC 2 cut(s) 57, 262
SspMI CTAG 5 cut(s) 372, 398, 444, 477, 581
StyI CCWWGG 1 cut(s) 647
TaaI ACNGT 1 cut(s) 86
TaiI ACGT 1 cut(s) 360
TaqI TCGA 3 cut(s) 525, 555, 714
TaqII GACCGA 1 cut(s) 578
TasI AATT 2 cut(s) 691, 746
TfiI GAWTC 2 cut(s) 461, 585
TseI GCWGC 2 cut(s) 188, 209
TspDTI ATGAA 4 cut(s) 35, 330, 612, 618
TspGWI ACGGA 1 cut(s) 834
VpaK11BI GGWCC 2 cut(s) 38, 59
XapI RAATTY 1 cut(s) 691
XspI CTAG 5 cut(s) 372, 398, 444, 477, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.