Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0015150

Physical Location & Seq

Genomic Coordinates Forward (+)

22655772 .. 22663721

Gene Structure 7950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00400570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGTTATTTCTACCGGACTCGTATGTTATTTTCAATATTTTGGGCGTGTTGACTCTTGCAAATCATTCTCAACATGCCATTGTGTTATCATCTGCAGCTGCACAATCTGTAACCACAACTGACCAACTGTCACATGCATGGACTTTGCCCAACGTGACAACATTTAAACCAAAGTCACTCTCATTCACTACATATCCCGCGCCCTTTCCACTCATGTATGCACTACCAAGCTTCCAGACTCACTCTCACTCCCACTCCCACTCACTCTCTGAGTTTCTTCCAAGTCCCTCCATGGAAAACTGCAGAAATTCTCCATTGAAGCCATGGAAGAAAGGCCCTACAAGAGGCAAAGGCGGCCCTCAGAACGCCTCGTGTGAATATCGAGGCGTTCGACAAAGAACTTGGGGCAAATGGGTTGCCGAAATCAGAGAGCCAAAGAAGAGAACCAGGCTCTGGTTGGGCTCATTCGCCACGGCCGAAGAAGCTGCCATGGCTTATGATGAGGCTGCCAGGAGACTCTACGGCCCTGATGCTTTTCTCAATCTTCCTCACCTGCAACCCAACTCCTCCAATCCTTCACTCAAATCACAAAAGTTCAAATGGTTCCCTTCCCAGAATTTCATTTCCATGTTTCCTCCTTGTGGAATGCTCAATATTAATGCTCAACCAAGTGTTCATGTCATTCATCAGAGGCTCCAAGAGCTTAAGCAAAATGGGGTTTATGGTCAAACTACTCCTTCCTCTAGTTCATCTTCCTGTGATTCAAAACCTGAGGTTCACACCACAATGGACAAAACCCCGAGAGAAAATGTAGCAGAGAATAAGGAGAAAGATGTAGAAATTACGTTGGAGAAAGTTGTGGGAGGAAAGGAGGAGAAGCCACAGATTGATCTCAATGAGTTTCTTCAGCAGTTGGGTGTGCTCAAGAAAGAGAGACAATCAGAAGAATCCGACACCACAAGAAGTTTTGCAGCTCCCGAATCTTCGATTACAGAAACCAGTGACGAATTCGGACCCTTTGCTGACAAGAATTTCAACTGGGATGCATTGATCGAGATGCATGGAATGGAAGACCAAGGAGCAGAAGCTGGTACCTTTCAAGTCTATGACGTGAACGAAGAGCTGTATTTCCCCACTTCTATTTGGAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

384

Amino Acids

43.15

Weight (kDa)

6.08

Isoelectric Point (pI)

53.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	126 - 175	1.8e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57600
fragaria_vesca	FvH4_6g23290
malus_domestica	MD12G1067600.v1.1
prunus_persica	Prupe.7G066700_v2.0.a1
pyrus_communis	pycom12g05990 pycom14g05600
rosa_chinensis	RchiOBHm_Chr3g0481251
rosa_laevigata	RLG00000023409
rosa_multiflora	Rmu_co8499509.1_g000001 Rmu_sc0000064.1_g000006
rosa_roxburghii	Rroxscaffold_6G00400570
rosa_rugosa	Rorug03G0190600
rosa_samantha	Rh3AG241500 Rh3CG272100 Rh3DG268500
rosa_wichuraiana	Rw3G021570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	561
Acc36I	ACCTGC	1 cut(s)	561
Acc65I	GGTACC	1 cut(s)	1091
AccB1I	GGYRCC	1 cut(s)	1091
AccB7I	CCANNNNNTGG	1 cut(s)	453
AccII	CGCG	1 cut(s)	200
AciI	CCGC	2 cut(s)	198, 354
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	4 cut(s)	307, 616, 1007, 1030
AcuI	CTGAAG	1 cut(s)	890
AfaI	GTAC	1 cut(s)	1093
AfiI	CCNNNNNNNGG	3 cut(s)	344, 453, 641
AflII	CTTAAG	1 cut(s)	704
AgsI	TTSAA	6 cut(s)	34, 319, 598, 765, 1036, 1100
AhdI	GACNNNNNGTC	1 cut(s)	127
AjiI	CACGTC	1 cut(s)	1111
AjnI	CCWGG	2 cut(s)	446, 509
AluBI	AGCT	7 cut(s)	98, 231, 485, 703, 974, 1088, 1123
AluI	AGCT	7 cut(s)	98, 231, 485, 703, 974, 1088, 1123
Alw21I	GWGCWC	1 cut(s)	924
Alw26I	GTCTC	2 cut(s)	508, 928
AlwNI	CAGNNNCTG	2 cut(s)	453, 1088
Ama87I	CYCGRG	1 cut(s)	799
AoxI	GGCC	4 cut(s)	334, 355, 474, 523
ApeKI	GCWGC	5 cut(s)	95, 98, 485, 506, 971
ApoI	RAATTY	4 cut(s)	307, 616, 1007, 1030
AseI	ATTAAT	1 cut(s)	657
Asp718I	GGTACC	1 cut(s)	1091
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	4 cut(s)	335, 356, 524, 1013
AsuHPI	GGTGA	1 cut(s)	542
AvaI	CYCGRG	1 cut(s)	799
AvaII	GGWCC	1 cut(s)	1013
AxyI	CCTNAGG	1 cut(s)	771
BanI	GGYRCC	1 cut(s)	1091
BanII	GRGCYC	1 cut(s)	464
BauI	CACGAG	1 cut(s)	370
BbsI	GAAGAC	1 cut(s)	1077
Bbv12I	GWGCWC	1 cut(s)	924
BbvI	GCAGC	5 cut(s)	85, 107, 472, 493, 983
BceAI	ACGGC	2 cut(s)	489, 538
BcgI	CGANNNNNNTGC	2 cut(s)	467, 501
BciT130I	CCWGG	2 cut(s)	448, 511
BcoDI	GTCTC	2 cut(s)	508, 928
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	2 cut(s)	93, 301
BfrI	CTTAAG	1 cut(s)	704
BfuAI	ACCTGC	1 cut(s)	561
BisI	GCNGC	6 cut(s)	96, 99, 355, 486, 507, 972
BlsI	GCNGC	6 cut(s)	97, 100, 356, 487, 508, 973
Bme1390I	CCNGG	2 cut(s)	448, 511
Bme18I	GGWCC	1 cut(s)	1013
BmeRI	GACNNNNNGTC	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	799
BmgBI	CACGTC	1 cut(s)	1111
BmgT120I	GGNCC	4 cut(s)	335, 356, 524, 1013
BmiI	GGNNCC	4 cut(s)	605, 695, 1015, 1093
BmrFI	CCNGG	2 cut(s)	448, 511
BmrI	ACTGGG	1 cut(s)	1048
BmsI	GCATC	3 cut(s)	520, 1033, 1047
BmuI	ACTGGG	1 cut(s)	1048
BpiI	GAAGAC	1 cut(s)	1077
BpuEI	CTTGAG	1 cut(s)	908
BsaJI	CCNNGG	5 cut(s)	291, 323, 471, 489, 1075
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	4 cut(s)	233, 239, 263, 269
Bsc4I	CCNNNNNNNGG	3 cut(s)	344, 453, 641
Bse1I	ACTGG	2 cut(s)	999, 1043
Bse21I	CCTNAGG	1 cut(s)	771
BseBI	CCWGG	2 cut(s)	448, 511
BseDI	CCNNGG	5 cut(s)	291, 323, 471, 489, 1075
BseGI	GGATG	1 cut(s)	1048
BseLI	CCNNNNNNNGG	3 cut(s)	344, 453, 641
BseMII	CTCAG	3 cut(s)	261, 374, 762
BseNI	ACTGG	2 cut(s)	999, 1043
BseRI	GAGGAG	2 cut(s)	556, 887
BseX3I	CGGCCG	1 cut(s)	474
BseXI	GCAGC	5 cut(s)	85, 107, 472, 493, 983
BsgI	GTGCAG	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	200
Bsh1285I	CGRYCG	1 cut(s)	477
BshFI	GGCC	4 cut(s)	336, 357, 476, 525
BshNI	GGYRCC	1 cut(s)	1091
BsiEI	CGRYCG	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	924
BsiHKCI	CYCGRG	1 cut(s)	799
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	3 cut(s)	344, 453, 641
BsmAI	GTCTC	2 cut(s)	508, 928
BsmFI	GGGAC	1 cut(s)	270
BsmI	GAATGC	1 cut(s)	651
BsnI	GGCC	4 cut(s)	336, 357, 476, 525
BsoBI	CYCGRG	1 cut(s)	799
Bsp1286I	GDGCHC	2 cut(s)	464, 924
Bsp143I	GATC	2 cut(s)	889, 1050
Bsp19I	CCATGG	3 cut(s)	291, 323, 489
BspACI	CCGC	2 cut(s)	198, 354
BspANI	GGCC	4 cut(s)	336, 357, 476, 525
BspCNI	CTCAG	3 cut(s)	262, 373, 763
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	4 cut(s)	605, 695, 1015, 1093
BspMAI	CTGCAG	2 cut(s)	97, 305
BspMI	ACCTGC	1 cut(s)	561
BspQI	GCTCTTC	1 cut(s)	1113
BspT107I	GGYRCC	1 cut(s)	1091
BspTI	CTTAAG	1 cut(s)	704
BsrI	ACTGG	2 cut(s)	999, 1043
BssECI	CCNNGG	5 cut(s)	291, 323, 471, 489, 1075
BssMI	GATC	2 cut(s)	889, 1050
BssSI	CACGAG	1 cut(s)	370
BssT1I	CCWWGG	4 cut(s)	291, 323, 489, 1075
Bst2BI	CACGAG	1 cut(s)	370
Bst2UI	CCWGG	2 cut(s)	448, 511
Bst4CI	ACNGT	1 cut(s)	129
Bst6I	CTCTTC	2 cut(s)	434, 1113
BstAFI	CTTAAG	1 cut(s)	704
BstDEI	CTNAG	3 cut(s)	270, 360, 771
BstDSI	CCRYGG	4 cut(s)	291, 323, 471, 489
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	1048
BstFNI	CGCG	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	2 cut(s)	892, 1053
BstMAI	GTCTC	2 cut(s)	508, 928
BstMBI	GATC	2 cut(s)	889, 1050
BstMCI	CGRYCG	1 cut(s)	477
BstMWI	GCNNNNNNNGC	4 cut(s)	354, 482, 491, 700
BstNI	CCWGG	2 cut(s)	448, 511
BstNSI	RCATGY	2 cut(s)	77, 137
BstSCI	CCNGG	2 cut(s)	446, 509
BstSFI	CTRYAG	2 cut(s)	93, 301
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	5 cut(s)	85, 107, 472, 493, 983
BstV2I	GAAGAC	1 cut(s)	1077
BstZI	CGGCCG	1 cut(s)	474
Bsu36I	CCTNAGG	1 cut(s)	771
BsuRI	GGCC	4 cut(s)	336, 357, 476, 525
BtgI	CCRYGG	4 cut(s)	291, 323, 471, 489
BtrI	CACGTC	1 cut(s)	1111
BtsCI	GGATG	1 cut(s)	1048
BtsIMutI	CAGTG	1 cut(s)	1006
BveI	ACCTGC	1 cut(s)	561
CaiI	CAGNNNCTG	2 cut(s)	453, 1088
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	4 cut(s)	335, 356, 524, 1013
Csp6I	GTAC	1 cut(s)	1092
CviQI	GTAC	1 cut(s)	1092
DdeI	CTNAG	3 cut(s)	270, 360, 771
DpnI	GATC	2 cut(s)	891, 1052
DpnII	GATC	2 cut(s)	889, 1050
DraI	TTTAAA	1 cut(s)	166
DriI	GACNNNNNGTC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	474
EagI	CGGCCG	1 cut(s)	474
Eam1104I	CTCTTC	2 cut(s)	434, 1113
Eam1105I	GACNNNNNGTC	1 cut(s)	127
EarI	CTCTTC	2 cut(s)	434, 1113
EclXI	CGGCCG	1 cut(s)	474
Eco130I	CCWWGG	4 cut(s)	291, 323, 489, 1075
Eco24I	GRGCYC	1 cut(s)	464
Eco47I	GGWCC	1 cut(s)	1013
Eco52I	CGGCCG	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	890
Eco81I	CCTNAGG	1 cut(s)	771
Eco88I	CYCGRG	1 cut(s)	799
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	335
EcoRI	GAATTC	1 cut(s)	1007
EcoRII	CCWGG	2 cut(s)	446, 509
EcoT14I	CCWWGG	4 cut(s)	291, 323, 489, 1075
EcoT22I	ATGCAT	3 cut(s)	139, 1048, 1062
EcoT38I	GRGCYC	1 cut(s)	464
ErhI	CCWWGG	4 cut(s)	291, 323, 489, 1075
FaqI	GGGAC	1 cut(s)	270
FauI	CCCGC	1 cut(s)	205
Fnu4HI	GCNGC	6 cut(s)	96, 99, 355, 486, 507, 972
FokI	GGATG	1 cut(s)	1055
FriOI	GRGCYC	1 cut(s)	464
Fsp4HI	GCNGC	6 cut(s)	96, 99, 355, 486, 507, 972
FspBI	CTAG	1 cut(s)	744
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	6 cut(s)	96, 99, 355, 486, 507, 972
HaeIII	GGCC	4 cut(s)	336, 357, 476, 525
HapII	CCGG	1 cut(s)	14
HhaI	GCGC	1 cut(s)	202
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	229
HinfI	GANTC	7 cut(s)	17, 52, 238, 516, 761, 947, 980
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	3 cut(s)	51, 778, 1114
Hpy188I	TCNGA	8 cut(s)	271, 363, 428, 690, 943, 952, 1013, 1154
Hpy188III	TCNNGA	4 cut(s)	235, 925, 977, 1054
Hpy8I	GTNNAC	3 cut(s)	51, 778, 1114
HpyAV	CCTTC	3 cut(s)	585, 618, 747
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4IV	ACGT	3 cut(s)	153, 845, 1110
HpyF10VI	GCNNNNNNNGC	4 cut(s)	354, 482, 491, 700
HpyF3I	CTNAG	3 cut(s)	270, 360, 771
HpySE526I	ACGT	3 cut(s)	153, 845, 1110
HspAI	GCGC	1 cut(s)	200
KpnI	GGTACC	1 cut(s)	1095
Kzo9I	GATC	2 cut(s)	889, 1050
LguI	GCTCTTC	1 cut(s)	1113
LmnI	GCTCC	3 cut(s)	699, 979, 1079
Lsp1109I	GCAGC	5 cut(s)	85, 107, 472, 493, 983
LweI	GCATC	3 cut(s)	520, 1033, 1047
MaeI	CTAG	1 cut(s)	744
MaeII	ACGT	3 cut(s)	153, 845, 1110
MaeIII	GTNAC	5 cut(s)	109, 129, 154, 174, 1001
MalI	GATC	2 cut(s)	891, 1052
MboI	GATC	2 cut(s)	889, 1050
MhlI	GDGCHC	2 cut(s)	464, 924
MluCI	AATT	5 cut(s)	307, 616, 840, 1007, 1030
MlyI	GAGTC	4 cut(s)	11, 46, 232, 510
MmeI	TCCRAC	2 cut(s)	828, 975
Mph1103I	ATGCAT	3 cut(s)	139, 1048, 1062
MseI	TTAA	3 cut(s)	165, 657, 705
MslI	CAYNNNNRTG	3 cut(s)	136, 626, 785
MspA1I	CMGCKG	1 cut(s)	98
MspCI	CTTAAG	1 cut(s)	704
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	2 cut(s)	448, 511
Mva1269I	GAATGC	1 cut(s)	651
MvaI	CCWGG	2 cut(s)	448, 511
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	4 cut(s)	354, 482, 491, 700
NcoI	CCATGG	3 cut(s)	291, 323, 489
NdeII	GATC	2 cut(s)	889, 1050
NlaIV	GGNNCC	4 cut(s)	605, 695, 1015, 1093
NmuCI	GTSAC	4 cut(s)	129, 154, 174, 1001
NsiI	ATGCAT	3 cut(s)	139, 1048, 1062
NspI	RCATGY	2 cut(s)	77, 137
PaqCI	CACCTGC	1 cut(s)	561
PciSI	GCTCTTC	1 cut(s)	1113
PcsI	WCGNNNNNNNCGW	2 cut(s)	388, 474
PctI	GAATGC	1 cut(s)	651
PfeI	GAWTC	3 cut(s)	761, 947, 980
PflMI	CCANNNNNTGG	1 cut(s)	453
PkrI	GCNGC	6 cut(s)	97, 100, 356, 487, 508, 973
PleI	GAGTC	4 cut(s)	11, 46, 232, 510
PpsI	GAGTC	4 cut(s)	11, 46, 232, 510
PshBI	ATTAAT	1 cut(s)	657
Psp6I	CCWGG	2 cut(s)	446, 509
PspGI	CCWGG	2 cut(s)	446, 509
PspN4I	GGNNCC	4 cut(s)	605, 695, 1015, 1093
PspPI	GGNCC	4 cut(s)	335, 356, 524, 1013
PstI	CTGCAG	2 cut(s)	97, 305
PstNI	CAGNNNCTG	2 cut(s)	453, 1088
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	1 cut(s)	1093
RsaNI	GTAC	1 cut(s)	1092
RseI	CAYNNNNRTG	3 cut(s)	136, 626, 785
SapI	GCTCTTC	1 cut(s)	1113
SaqAI	TTAA	3 cut(s)	165, 657, 705
SatI	GCNGC	6 cut(s)	96, 99, 355, 486, 507, 972
Sau3AI	GATC	2 cut(s)	889, 1050
Sau96I	GGNCC	4 cut(s)	335, 356, 524, 1013
SchI	GAGTC	4 cut(s)	11, 46, 232, 510
ScrFI	CCNGG	2 cut(s)	448, 511
SduI	GDGCHC	2 cut(s)	464, 924
SfaNI	GCATC	3 cut(s)	520, 1033, 1047
SfcI	CTRYAG	2 cut(s)	93, 301
SinI	GGWCC	1 cut(s)	1013
SmiMI	CAYNNNNRTG	3 cut(s)	136, 626, 785
SmlI	CTYRAG	2 cut(s)	704, 923
SmoI	CTYRAG	2 cut(s)	704, 923
Sse9I	AATT	5 cut(s)	307, 616, 840, 1007, 1030
SsiI	CCGC	2 cut(s)	198, 354
SspI	AATATT	2 cut(s)	37, 655
SspMI	CTAG	1 cut(s)	744
StyD4I	CCNGG	2 cut(s)	446, 509
StyI	CCWWGG	4 cut(s)	291, 323, 489, 1075
TaaI	ACNGT	1 cut(s)	129
TaiI	ACGT	3 cut(s)	156, 848, 1113
TaqI	TCGA	4 cut(s)	382, 391, 986, 1053
TasI	AATT	5 cut(s)	307, 616, 840, 1007, 1030
TauI	GCSGC	1 cut(s)	357
TfiI	GAWTC	3 cut(s)	761, 947, 980
Tru1I	TTAA	3 cut(s)	165, 657, 705
Tru9I	TTAA	3 cut(s)	165, 657, 705
TscAI	CASTG	1 cut(s)	1006
TseFI	GTSAC	4 cut(s)	129, 154, 174, 1001
TseI	GCWGC	5 cut(s)	95, 98, 485, 506, 971
Tsp45I	GTSAC	4 cut(s)	129, 154, 174, 1001
TspDTI	ATGAA	4 cut(s)	610, 665, 674, 738
TspRI	CASTG	1 cut(s)	1006
Van91I	CCANNNNNTGG	1 cut(s)	453
Vha464I	CTTAAG	1 cut(s)	704
VpaK11BI	GGWCC	1 cut(s)	1013
VspI	ATTAAT	1 cut(s)	657
XagI	CCTNNNNNAGG	1 cut(s)	342
XapI	RAATTY	4 cut(s)	307, 616, 1007, 1030
XceI	RCATGY	2 cut(s)	77, 137
XcmI	CCANNNNNNNNNTGG	2 cut(s)	321, 454
XspI	CTAG	1 cut(s)	744
Zsp2I	ATGCAT	3 cut(s)	139, 1048, 1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.