RchiOBHm_Chr3g0481251

Dehydration-responsive element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0015150
Physical Location & Seq
Reverse (-)
27326968 .. 27328083
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44622

Sequence Viewer

Length: 1050 bp
ATGGCGCTCTGGACTGATCAGCTGTCACATGCATGGACTTTGCCCAACGTGACAACATTTAAACCAAAGTCACTCTCATTCACTACATATCCCGCGCCCTTTCCACTCATGTGTGCACTACCAAGCTTCCAGATTCACTCTCACTCTCACTCCCACTCACTCTCTGAGTTTCTTCCAAGTCCCTCCATGGAAAACTGCAGAAAATCTCCATTGAAGCCATGGAAGAAAGGCCCTACAAGAGGCAAAGGCGGCCCTCAGAACGCTTCGTGTGAATATCGAGGCGTTCGACAAAGAACTTGGGGTAAATGGGTTGCTGAAATCAGAGAGCCAAAGAAGAGAACCAGGCTCTGGTTGGGCTCATTCGCCACGGCCGAAGAAGCTGCCATGGCTTATGATGAGGCTGCCAGGAGACTCTACGGCCCTGATGCTTTTCTCAATCTTCCTCACCTGCAACCCAACTCCTCCAATCCTTCACTCAAAACACAAAAGTTCAAATGGTTCCCTTCCCAGAATTTCATTTCCATGTTTCCTCCTTGTGGAATGCTCAATATTAATGCTCAACCAAGTGTTCATGTCATTCATCAGAGGCTCCAAGAGCTTAAGCAAAATGGGGTTTATGGTCAAACTACTCCCTCCTCTAGTTCATCTTCCTGTGAGTCAAAACCTGAGGCTCACACCACAGTGGACAAAACCCCGAAAGAAAATGTAGCAGAGAATAAGGAGAAAGATGTAGAAATTACGTTAGAGAAAGTTGTGGGAGGAAGGGAGGAGAAGCCACAGATTGATCTCAATGAGTTTCTTCAGCAGTTGGGTGTGCTCAAGAGAGAGAGACAATCAGAAGAATCCGACACCACAACAAGTTTTGCAGCTCCCGAATCTTCGATTACAGAAACCAGTGACGAATTCGGACCCTTTGCTGACAAGAATTTCAACTGGGATGCATTGATTGAGATGCATGGAATGGAAGACCAAGGAGCAGAAGCTGGTACCTTTCAAGTTTATGATGTGAACGAAGAGCTTTATTTCCCCACTTCTATTTGGAACTTCTGA

Protein Analysis

349

Amino Acids

39.43

Weight (kDa)

6.09

Isoelectric Point (pI)

50.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 91 - 140 1.6e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57600
fragaria_vesca FvH4_6g23290
malus_domestica MD12G1067600.v1.1
prunus_persica Prupe.7G066700_v2.0.a1
pyrus_communis pycom12g05990 pycom14g05600
rosa_chinensis RchiOBHm_Chr3g0481251
rosa_laevigata RLG00000023409
rosa_multiflora Rmu_co8499509.1_g000001 Rmu_sc0000064.1_g000006
rosa_roxburghii Rroxscaffold_6G00400570
rosa_rugosa Rorug03G0190600
rosa_samantha Rh3AG241500 Rh3CG272100 Rh3DG268500
rosa_wichuraiana Rw3G021570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 456
Acc36I ACCTGC 1 cut(s) 456
Acc65I GGTACC 1 cut(s) 986
AccB1I GGYRCC 1 cut(s) 986
AccB7I CCANNNNNTGG 1 cut(s) 348
AccII CGCG 1 cut(s) 95
AciI CCGC 2 cut(s) 93, 249
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 3 cut(s) 511, 902, 925
AcuI CTGAAG 1 cut(s) 785
AfaI GTAC 1 cut(s) 988
AfiI CCNNNNNNNGG 3 cut(s) 239, 348, 536
AflII CTTAAG 1 cut(s) 599
AgsI TTSAA 4 cut(s) 214, 493, 931, 995
AjnI CCWGG 2 cut(s) 341, 404
AleI CACNNNNGTG 2 cut(s) 109, 680
AluBI AGCT 7 cut(s) 22, 126, 380, 598, 869, 983, 1018
AluI AGCT 7 cut(s) 22, 126, 380, 598, 869, 983, 1018
Alw21I GWGCWC 2 cut(s) 118, 819
Alw26I GTCTC 2 cut(s) 403, 823
Alw44I GTGCAC 1 cut(s) 114
AlwNI CAGNNNCTG 2 cut(s) 348, 983
AoxI GGCC 4 cut(s) 229, 250, 369, 418
ApaLI GTGCAC 1 cut(s) 114
ApeKI GCWGC 3 cut(s) 380, 401, 866
ApoI RAATTY 3 cut(s) 511, 902, 925
AseI ATTAAT 1 cut(s) 552
Asp718I GGTACC 1 cut(s) 986
AspLEI GCGC 2 cut(s) 7, 97
AspS9I GGNCC 4 cut(s) 230, 251, 419, 908
AsuHPI GGTGA 1 cut(s) 437
AvaII GGWCC 1 cut(s) 908
AxyI CCTNAGG 1 cut(s) 666
BaeGI GKGCMC 1 cut(s) 118
BanI GGYRCC 1 cut(s) 986
BanII GRGCYC 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 972
Bbv12I GWGCWC 2 cut(s) 118, 819
BbvI GCAGC 3 cut(s) 367, 388, 878
BceAI ACGGC 2 cut(s) 384, 433
BcgI CGANNNNNNTGC 2 cut(s) 362, 396
BciT130I CCWGG 2 cut(s) 343, 406
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 2 cut(s) 403, 823
BfaI CTAG 1 cut(s) 639
BfmI CTRYAG 1 cut(s) 196
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 599
BfuAI ACCTGC 1 cut(s) 456
BisI GCNGC 4 cut(s) 250, 381, 402, 867
BlsI GCNGC 4 cut(s) 251, 382, 403, 868
Bme1390I CCNGG 2 cut(s) 343, 406
Bme18I GGWCC 1 cut(s) 908
BmgT120I GGNCC 4 cut(s) 230, 251, 419, 908
BmiI GGNNCC 4 cut(s) 500, 590, 910, 988
BmrFI CCNGG 2 cut(s) 343, 406
BmrI ACTGGG 1 cut(s) 943
BmsI GCATC 3 cut(s) 415, 928, 942
BmuI ACTGGG 1 cut(s) 943
BpiI GAAGAC 1 cut(s) 972
BpuEI CTTGAG 1 cut(s) 803
BsaJI CCNNGG 5 cut(s) 186, 218, 366, 384, 970
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 348, 536
Bse1I ACTGG 2 cut(s) 894, 938
Bse21I CCTNAGG 1 cut(s) 666
BseBI CCWGG 2 cut(s) 343, 406
BseDI CCNNGG 5 cut(s) 186, 218, 366, 384, 970
BseGI GGATG 1 cut(s) 943
BseLI CCNNNNNNNGG 3 cut(s) 239, 348, 536
BseMII CTCAG 3 cut(s) 156, 269, 657
BseNI ACTGG 2 cut(s) 894, 938
BseRI GAGGAG 3 cut(s) 451, 625, 782
BseSI GKGCMC 1 cut(s) 118
BseX3I CGGCCG 1 cut(s) 369
BseXI GCAGC 3 cut(s) 367, 388, 878
Bsh1236I CGCG 1 cut(s) 95
Bsh1285I CGRYCG 1 cut(s) 372
BshFI GGCC 4 cut(s) 231, 252, 371, 420
BshNI GGYRCC 1 cut(s) 986
BsiEI CGRYCG 1 cut(s) 372
BsiHKAI GWGCWC 2 cut(s) 118, 819
BslFI GGGAC 1 cut(s) 165
BslI CCNNNNNNNGG 3 cut(s) 239, 348, 536
BsmAI GTCTC 2 cut(s) 403, 823
BsmFI GGGAC 1 cut(s) 165
BsmI GAATGC 1 cut(s) 546
BsnI GGCC 4 cut(s) 231, 252, 371, 420
Bsp1286I GDGCHC 3 cut(s) 118, 359, 819
Bsp143I GATC 2 cut(s) 16, 784
Bsp19I CCATGG 3 cut(s) 186, 218, 384
BspACI CCGC 2 cut(s) 93, 249
BspANI GGCC 4 cut(s) 231, 252, 371, 420
BspCNI CTCAG 3 cut(s) 157, 268, 658
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 4 cut(s) 500, 590, 910, 988
BspMAI CTGCAG 1 cut(s) 200
BspMI ACCTGC 1 cut(s) 456
BspQI GCTCTTC 1 cut(s) 1008
BspT107I GGYRCC 1 cut(s) 986
BspTI CTTAAG 1 cut(s) 599
BsrI ACTGG 2 cut(s) 894, 938
BssECI CCNNGG 5 cut(s) 186, 218, 366, 384, 970
BssMI GATC 2 cut(s) 16, 784
BssT1I CCWWGG 4 cut(s) 186, 218, 384, 970
Bst2UI CCWGG 2 cut(s) 343, 406
Bst4CI ACNGT 1 cut(s) 682
Bst6I CTCTTC 2 cut(s) 329, 1008
BstAFI CTTAAG 1 cut(s) 599
BstDEI CTNAG 3 cut(s) 165, 255, 666
BstDSI CCRYGG 4 cut(s) 186, 218, 366, 384
BstENI CCTNNNNNAGG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 943
BstFNI CGCG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 97
BstKTI GATC 2 cut(s) 19, 787
BstMAI GTCTC 2 cut(s) 403, 823
BstMBI GATC 2 cut(s) 16, 784
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 4 cut(s) 249, 377, 386, 595
BstNI CCWGG 2 cut(s) 343, 406
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 2 cut(s) 341, 404
BstSFI CTRYAG 1 cut(s) 196
BstSLI GKGCMC 1 cut(s) 118
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 3 cut(s) 367, 388, 878
BstV2I GAAGAC 1 cut(s) 972
BstZI CGGCCG 1 cut(s) 369
Bsu36I CCTNAGG 1 cut(s) 666
BsuRI GGCC 4 cut(s) 231, 252, 371, 420
BtgI CCRYGG 4 cut(s) 186, 218, 366, 384
BtsCI GGATG 1 cut(s) 943
BtsIMutI CAGTG 2 cut(s) 687, 901
BveI ACCTGC 1 cut(s) 456
CaiI CAGNNNCTG 2 cut(s) 348, 983
CfoI GCGC 2 cut(s) 7, 97
Cfr13I GGNCC 4 cut(s) 230, 251, 419, 908
Csp6I GTAC 1 cut(s) 987
CviAII CATG 9 cut(s) 29, 33, 109, 187, 219, 385, 523, 572, 956
CviQI GTAC 1 cut(s) 987
DdeI CTNAG 3 cut(s) 165, 255, 666
DpnI GATC 2 cut(s) 18, 786
DpnII GATC 2 cut(s) 16, 784
DraI TTTAAA 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 369
EagI CGGCCG 1 cut(s) 369
Eam1104I CTCTTC 2 cut(s) 329, 1008
EarI CTCTTC 2 cut(s) 329, 1008
EclXI CGGCCG 1 cut(s) 369
Eco130I CCWWGG 4 cut(s) 186, 218, 384, 970
Eco24I GRGCYC 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 908
Eco52I CGGCCG 1 cut(s) 369
Eco57I CTGAAG 1 cut(s) 785
Eco81I CCTNAGG 1 cut(s) 666
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 230
EcoRI GAATTC 1 cut(s) 902
EcoRII CCWGG 2 cut(s) 341, 404
EcoT14I CCWWGG 4 cut(s) 186, 218, 384, 970
EcoT22I ATGCAT 3 cut(s) 34, 943, 957
EcoT38I GRGCYC 1 cut(s) 359
ErhI CCWWGG 4 cut(s) 186, 218, 384, 970
FaeI CATG 9 cut(s) 32, 36, 112, 190, 222, 388, 526, 575, 959
FaqI GGGAC 1 cut(s) 165
FatI CATG 9 cut(s) 28, 32, 108, 186, 218, 384, 522, 571, 955
FauI CCCGC 1 cut(s) 100
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 4 cut(s) 250, 381, 402, 867
FokI GGATG 1 cut(s) 950
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 4 cut(s) 250, 381, 402, 867
FspBI CTAG 1 cut(s) 639
GlaI GCGC 2 cut(s) 6, 96
GluI GCNGC 4 cut(s) 250, 381, 402, 867
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 231, 252, 371, 420
HhaI GCGC 2 cut(s) 7, 97
Hin1II CATG 9 cut(s) 32, 36, 112, 190, 222, 388, 526, 575, 959
Hin6I GCGC 2 cut(s) 5, 95
HinP1I GCGC 2 cut(s) 5, 95
HindIII AAGCTT 1 cut(s) 124
HinfI GANTC 5 cut(s) 133, 411, 656, 842, 875
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 3 cut(s) 116, 685, 1009
Hpy188I TCNGA 8 cut(s) 166, 258, 323, 585, 838, 847, 908, 1049
Hpy188III TCNNGA 4 cut(s) 10, 130, 820, 872
Hpy8I GTNNAC 3 cut(s) 116, 685, 1009
HpyAV CCTTC 3 cut(s) 480, 513, 756
HpyCH4III ACNGT 1 cut(s) 682
HpyCH4IV ACGT 2 cut(s) 48, 740
HpyCH4V TGCA 7 cut(s) 32, 116, 198, 451, 866, 941, 955
HpyF10VI GCNNNNNNNGC 4 cut(s) 249, 377, 386, 595
HpyF3I CTNAG 3 cut(s) 165, 255, 666
HpySE526I ACGT 2 cut(s) 48, 740
Hsp92II CATG 9 cut(s) 32, 36, 112, 190, 222, 388, 526, 575, 959
HspAI GCGC 2 cut(s) 5, 95
KpnI GGTACC 1 cut(s) 990
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 2 cut(s) 16, 784
LguI GCTCTTC 1 cut(s) 1008
LmnI GCTCC 3 cut(s) 594, 874, 974
Lsp1109I GCAGC 3 cut(s) 367, 388, 878
LweI GCATC 3 cut(s) 415, 928, 942
MaeI CTAG 1 cut(s) 639
MaeII ACGT 2 cut(s) 48, 740
MaeIII GTNAC 4 cut(s) 24, 49, 69, 896
MalI GATC 2 cut(s) 18, 786
MboI GATC 2 cut(s) 16, 784
MhlI GDGCHC 3 cut(s) 118, 359, 819
MluCI AATT 4 cut(s) 511, 735, 902, 925
MlyI GAGTC 2 cut(s) 405, 665
MmeI TCCRAC 1 cut(s) 870
Mph1103I ATGCAT 3 cut(s) 34, 943, 957
MseI TTAA 3 cut(s) 60, 552, 600
MslI CAYNNNNRTG 4 cut(s) 31, 109, 521, 680
MspA1I CMGCKG 1 cut(s) 22
MspCI CTTAAG 1 cut(s) 599
MspR9I CCNGG 2 cut(s) 343, 406
Mva1269I GAATGC 1 cut(s) 546
MvaI CCWGG 2 cut(s) 343, 406
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 4 cut(s) 249, 377, 386, 595
NcoI CCATGG 3 cut(s) 186, 218, 384
NdeII GATC 2 cut(s) 16, 784
NlaIII CATG 9 cut(s) 32, 36, 112, 190, 222, 388, 526, 575, 959
NlaIV GGNNCC 4 cut(s) 500, 590, 910, 988
NmuCI GTSAC 4 cut(s) 24, 49, 69, 896
NsiI ATGCAT 3 cut(s) 34, 943, 957
NspI RCATGY 1 cut(s) 32
OliI CACNNNNGTG 2 cut(s) 109, 680
PaqCI CACCTGC 1 cut(s) 456
PciSI GCTCTTC 1 cut(s) 1008
PcsI WCGNNNNNNNCGW 2 cut(s) 283, 369
PctI GAATGC 1 cut(s) 546
PfeI GAWTC 3 cut(s) 133, 842, 875
PflMI CCANNNNNTGG 1 cut(s) 348
PkrI GCNGC 4 cut(s) 251, 382, 403, 868
PleI GAGTC 2 cut(s) 405, 664
PpsI GAGTC 2 cut(s) 405, 664
PshBI ATTAAT 1 cut(s) 552
Psp6I CCWGG 2 cut(s) 341, 404
PspGI CCWGG 2 cut(s) 341, 404
PspN4I GGNNCC 4 cut(s) 500, 590, 910, 988
PspPI GGNCC 4 cut(s) 230, 251, 419, 908
PstI CTGCAG 1 cut(s) 200
PstNI CAGNNNCTG 2 cut(s) 348, 983
PvuII CAGCTG 1 cut(s) 22
RsaI GTAC 1 cut(s) 988
RsaNI GTAC 1 cut(s) 987
RseI CAYNNNNRTG 4 cut(s) 31, 109, 521, 680
SapI GCTCTTC 1 cut(s) 1008
SaqAI TTAA 3 cut(s) 60, 552, 600
SatI GCNGC 4 cut(s) 250, 381, 402, 867
Sau3AI GATC 2 cut(s) 16, 784
Sau96I GGNCC 4 cut(s) 230, 251, 419, 908
SchI GAGTC 2 cut(s) 405, 665
ScrFI CCNGG 2 cut(s) 343, 406
SduI GDGCHC 3 cut(s) 118, 359, 819
SfaNI GCATC 3 cut(s) 415, 928, 942
SfcI CTRYAG 1 cut(s) 196
SinI GGWCC 1 cut(s) 908
SmiMI CAYNNNNRTG 4 cut(s) 31, 109, 521, 680
SmlI CTYRAG 2 cut(s) 599, 818
SmoI CTYRAG 2 cut(s) 599, 818
Sse9I AATT 4 cut(s) 511, 735, 902, 925
SsiI CCGC 2 cut(s) 93, 249
SspI AATATT 1 cut(s) 550
SspMI CTAG 1 cut(s) 639
StyD4I CCNGG 2 cut(s) 341, 404
StyI CCWWGG 4 cut(s) 186, 218, 384, 970
TaaI ACNGT 1 cut(s) 682
TaiI ACGT 2 cut(s) 51, 743
TaqI TCGA 3 cut(s) 277, 286, 881
TasI AATT 4 cut(s) 511, 735, 902, 925
TauI GCSGC 1 cut(s) 252
TfiI GAWTC 3 cut(s) 133, 842, 875
Tru1I TTAA 3 cut(s) 60, 552, 600
Tru9I TTAA 3 cut(s) 60, 552, 600
TscAI CASTG 2 cut(s) 687, 901
TseFI GTSAC 4 cut(s) 24, 49, 69, 896
TseI GCWGC 3 cut(s) 380, 401, 866
Tsp45I GTSAC 4 cut(s) 24, 49, 69, 896
TspDTI ATGAA 4 cut(s) 505, 560, 569, 633
TspRI CASTG 2 cut(s) 687, 901
Van91I CCANNNNNTGG 1 cut(s) 348
Vha464I CTTAAG 1 cut(s) 599
VneI GTGCAC 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 908
VspI ATTAAT 1 cut(s) 552
XagI CCTNNNNNAGG 1 cut(s) 237
XapI RAATTY 3 cut(s) 511, 902, 925
XceI RCATGY 1 cut(s) 32
XcmI CCANNNNNNNNNTGG 2 cut(s) 216, 349
XspI CTAG 1 cut(s) 639
Zsp2I ATGCAT 3 cut(s) 34, 943, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.