Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0015150

Physical Location & Seq

Genomic Coordinates Reverse (-)

26170061 .. 26171255

Gene Structure 1195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G021570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAAAACTGCAGAAAATCTCCATTGAAGCCATGGAAGAAAGGCCCTACAAGAGGCAAAGGCGGCCCTCAGAACGCTTCGTGTGAATATCGAGGCGTTCGACAAAGAACTTGGGGTAAATGGGTTGCCGAAATCAGAGAGCCAAAGAAGAGAACCAGGCTCTGGTTGGGCTCATTCGCCACGGCCGAAGAAGCTGCCATGGCTTATGATGAGGCTGCCAGGAGACTCTACGGTCCTGATGCTTTTCTCAATCTTCCTCACCTGCAACCCAACTCCTCCAATCCTTCACTCAAATCACAAAAGTTCAAATGGTTCCCTTCCCAGAATTTCATTTCCATGTTTCCTCCTTGTGGAATGCTCAATATTAATGCTCAACCAAGTGTTCATGTCATTCATCAGAGGCTCCAAGAGCTTAAGCAAAATGGGGTTTATGGTCAAACTACTCCCTCCTCTAGTTCATCTTCCTGTGATTCAAAACCTGAGGCTCACACCACAATGGACAAAACCACGAAAGAAAATGTAGCAGAGAATAAGGAGAAAGATGTAGAAATTACGTTGGAGAAAGTTGTGGGAGGAAGGGAGGAGAAGCCACAGATTGATCTCAATGAGTTTCTTCAGCAGTTGGGTGTGCTCAAGAGAGAGAGACAATCAGAAGAATCCGACACCACAACAAGTTTTGCAGCTCCCGAATCTTCGATTACAGAAACCAGTGACGAATTCGGACCCTTCGCTGACAAGAATTTCAACTGGGATGCATTGATTGAGATGCATGGAATGGAAGACCAAGGAGCAGAAGCTGGTACCTTTCAAGTTTATGATGTGAACGAAGAGCTGTATTTCCCCACTTCTATTTGGAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

287

Amino Acids

32.5

Weight (kDa)

5.7

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	29 - 78	1.2e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57600
fragaria_vesca	FvH4_6g23290
malus_domestica	MD12G1067600.v1.1
prunus_persica	Prupe.7G066700_v2.0.a1
pyrus_communis	pycom12g05990 pycom14g05600
rosa_chinensis	RchiOBHm_Chr3g0481251
rosa_laevigata	RLG00000023409
rosa_multiflora	Rmu_co8499509.1_g000001 Rmu_sc0000064.1_g000006
rosa_roxburghii	Rroxscaffold_6G00400570
rosa_rugosa	Rorug03G0190600
rosa_samantha	Rh3AG241500 Rh3CG272100 Rh3DG268500
rosa_wichuraiana	Rw3G021570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	270
AasI	GACNNNNNNGTC	1 cut(s)	231
Acc36I	ACCTGC	1 cut(s)	270
Acc65I	GGTACC	1 cut(s)	800
AccB1I	GGYRCC	1 cut(s)	800
AccB7I	CCANNNNNTGG	1 cut(s)	162
AciI	CCGC	1 cut(s)	63
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	3 cut(s)	325, 716, 739
AcuI	CTGAAG	1 cut(s)	599
AfaI	GTAC	1 cut(s)	802
AfiI	CCNNNNNNNGG	3 cut(s)	53, 162, 350
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	5 cut(s)	28, 307, 474, 745, 809
AjnI	CCWGG	2 cut(s)	155, 218
AluBI	AGCT	5 cut(s)	194, 412, 683, 797, 832
AluI	AGCT	5 cut(s)	194, 412, 683, 797, 832
Alw21I	GWGCWC	1 cut(s)	633
Alw26I	GTCTC	2 cut(s)	217, 637
AlwNI	CAGNNNCTG	2 cut(s)	162, 797
AoxI	GGCC	3 cut(s)	43, 64, 183
ApeKI	GCWGC	3 cut(s)	194, 215, 680
ApoI	RAATTY	3 cut(s)	325, 716, 739
AseI	ATTAAT	1 cut(s)	366
Asp718I	GGTACC	1 cut(s)	800
AspS9I	GGNCC	4 cut(s)	44, 65, 233, 722
AsuHPI	GGTGA	1 cut(s)	251
AvaII	GGWCC	2 cut(s)	233, 722
AxyI	CCTNAGG	1 cut(s)	480
BanI	GGYRCC	1 cut(s)	800
BanII	GRGCYC	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	786
Bbv12I	GWGCWC	1 cut(s)	633
BbvI	GCAGC	3 cut(s)	181, 202, 692
BceAI	ACGGC	1 cut(s)	198
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	2 cut(s)	157, 220
BcoDI	GTCTC	2 cut(s)	217, 637
BfaI	CTAG	1 cut(s)	453
BfmI	CTRYAG	1 cut(s)	10
BfrI	CTTAAG	1 cut(s)	413
BfuAI	ACCTGC	1 cut(s)	270
BisI	GCNGC	4 cut(s)	64, 195, 216, 681
BlsI	GCNGC	4 cut(s)	65, 196, 217, 682
Bme1390I	CCNGG	2 cut(s)	157, 220
Bme18I	GGWCC	2 cut(s)	233, 722
BmgT120I	GGNCC	4 cut(s)	44, 65, 233, 722
BmiI	GGNNCC	4 cut(s)	314, 404, 724, 802
BmrFI	CCNGG	2 cut(s)	157, 220
BmrI	ACTGGG	1 cut(s)	757
BmsI	GCATC	3 cut(s)	229, 742, 756
BmuI	ACTGGG	1 cut(s)	757
BpiI	GAAGAC	1 cut(s)	786
BpuEI	CTTGAG	1 cut(s)	617
BsaJI	CCNNGG	4 cut(s)	32, 180, 198, 784
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 162, 350
Bse1I	ACTGG	2 cut(s)	708, 752
Bse21I	CCTNAGG	1 cut(s)	480
BseBI	CCWGG	2 cut(s)	157, 220
BseDI	CCNNGG	4 cut(s)	32, 180, 198, 784
BseGI	GGATG	1 cut(s)	757
BseLI	CCNNNNNNNGG	3 cut(s)	53, 162, 350
BseMII	CTCAG	2 cut(s)	83, 471
BseNI	ACTGG	2 cut(s)	708, 752
BseRI	GAGGAG	3 cut(s)	265, 439, 596
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	3 cut(s)	181, 202, 692
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	3 cut(s)	45, 66, 185
BshNI	GGYRCC	1 cut(s)	800
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	633
BslI	CCNNNNNNNGG	3 cut(s)	53, 162, 350
BsmAI	GTCTC	2 cut(s)	217, 637
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	3 cut(s)	45, 66, 185
Bsp1286I	GDGCHC	2 cut(s)	173, 633
Bsp143I	GATC	1 cut(s)	598
Bsp19I	CCATGG	2 cut(s)	32, 198
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	3 cut(s)	45, 66, 185
BspCNI	CTCAG	2 cut(s)	82, 472
BspLI	GGNNCC	4 cut(s)	314, 404, 724, 802
BspMAI	CTGCAG	1 cut(s)	14
BspMI	ACCTGC	1 cut(s)	270
BspQI	GCTCTTC	1 cut(s)	822
BspT107I	GGYRCC	1 cut(s)	800
BspTI	CTTAAG	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	708, 752
BssECI	CCNNGG	4 cut(s)	32, 180, 198, 784
BssMI	GATC	1 cut(s)	598
BssT1I	CCWWGG	3 cut(s)	32, 198, 784
Bst2UI	CCWGG	2 cut(s)	157, 220
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	2 cut(s)	143, 822
BstAFI	CTTAAG	1 cut(s)	413
BstDEI	CTNAG	2 cut(s)	69, 480
BstDSI	CCRYGG	3 cut(s)	32, 180, 198
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	757
BstKTI	GATC	1 cut(s)	601
BstMAI	GTCTC	2 cut(s)	217, 637
BstMBI	GATC	1 cut(s)	598
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 191, 200, 409
BstNI	CCWGG	2 cut(s)	157, 220
BstSCI	CCNGG	2 cut(s)	155, 218
BstSFI	CTRYAG	1 cut(s)	10
BstV1I	GCAGC	3 cut(s)	181, 202, 692
BstV2I	GAAGAC	1 cut(s)	786
BstZI	CGGCCG	1 cut(s)	183
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	3 cut(s)	45, 66, 185
BtgI	CCRYGG	3 cut(s)	32, 180, 198
BtsCI	GGATG	1 cut(s)	757
BtsIMutI	CAGTG	1 cut(s)	715
BveI	ACCTGC	1 cut(s)	270
CaiI	CAGNNNCTG	2 cut(s)	162, 797
Cfr13I	GGNCC	4 cut(s)	44, 65, 233, 722
Csp6I	GTAC	1 cut(s)	801
CviAII	CATG	5 cut(s)	33, 199, 337, 386, 770
CviQI	GTAC	1 cut(s)	801
DdeI	CTNAG	2 cut(s)	69, 480
DpnI	GATC	1 cut(s)	600
DpnII	GATC	1 cut(s)	598
DrdI	GACNNNNNNGTC	1 cut(s)	231
DseDI	GACNNNNNNGTC	1 cut(s)	231
EaeI	YGGCCR	1 cut(s)	183
EagI	CGGCCG	1 cut(s)	183
Eam1104I	CTCTTC	2 cut(s)	143, 822
EarI	CTCTTC	2 cut(s)	143, 822
EclXI	CGGCCG	1 cut(s)	183
Eco130I	CCWWGG	3 cut(s)	32, 198, 784
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	2 cut(s)	233, 722
Eco52I	CGGCCG	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	599
Eco81I	CCTNAGG	1 cut(s)	480
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	716
EcoRII	CCWGG	2 cut(s)	155, 218
EcoT14I	CCWWGG	3 cut(s)	32, 198, 784
EcoT22I	ATGCAT	2 cut(s)	757, 771
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	3 cut(s)	32, 198, 784
FaeI	CATG	5 cut(s)	36, 202, 340, 389, 773
FaiI	YATR	8 cut(s)	34, 200, 207, 338, 387, 432, 771, 816
FatI	CATG	5 cut(s)	32, 198, 336, 385, 769
Fnu4HI	GCNGC	4 cut(s)	64, 195, 216, 681
FokI	GGATG	1 cut(s)	764
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	4 cut(s)	64, 195, 216, 681
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	4 cut(s)	64, 195, 216, 681
HaeIII	GGCC	3 cut(s)	45, 66, 185
Hin1II	CATG	5 cut(s)	36, 202, 340, 389, 773
HinfI	GANTC	4 cut(s)	225, 470, 656, 689
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	823
Hpy188I	TCNGA	7 cut(s)	72, 137, 399, 652, 661, 722, 863
Hpy188III	TCNNGA	3 cut(s)	236, 634, 686
Hpy8I	GTNNAC	1 cut(s)	823
HpyAV	CCTTC	4 cut(s)	294, 327, 570, 736
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	554
HpyCH4V	TGCA	5 cut(s)	12, 265, 680, 755, 769
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 191, 200, 409
HpyF3I	CTNAG	2 cut(s)	69, 480
HpySE526I	ACGT	1 cut(s)	554
Hsp92II	CATG	5 cut(s)	36, 202, 340, 389, 773
KpnI	GGTACC	1 cut(s)	804
Kzo9I	GATC	1 cut(s)	598
LguI	GCTCTTC	1 cut(s)	822
LmnI	GCTCC	3 cut(s)	408, 688, 788
Lsp1109I	GCAGC	3 cut(s)	181, 202, 692
LweI	GCATC	3 cut(s)	229, 742, 756
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	1 cut(s)	554
MaeIII	GTNAC	1 cut(s)	710
MalI	GATC	1 cut(s)	600
MboI	GATC	1 cut(s)	598
MhlI	GDGCHC	2 cut(s)	173, 633
MluCI	AATT	4 cut(s)	325, 549, 716, 739
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	2 cut(s)	537, 684
Mph1103I	ATGCAT	2 cut(s)	757, 771
MseI	TTAA	2 cut(s)	366, 414
MslI	CAYNNNNRTG	2 cut(s)	335, 494
MspCI	CTTAAG	1 cut(s)	413
MspR9I	CCNGG	2 cut(s)	157, 220
Mva1269I	GAATGC	1 cut(s)	360
MvaI	CCWGG	2 cut(s)	157, 220
MwoI	GCNNNNNNNGC	4 cut(s)	63, 191, 200, 409
NcoI	CCATGG	2 cut(s)	32, 198
NdeII	GATC	1 cut(s)	598
NlaIII	CATG	5 cut(s)	36, 202, 340, 389, 773
NlaIV	GGNNCC	4 cut(s)	314, 404, 724, 802
NmuCI	GTSAC	1 cut(s)	710
NsiI	ATGCAT	2 cut(s)	757, 771
PaqCI	CACCTGC	1 cut(s)	270
PciSI	GCTCTTC	1 cut(s)	822
PcsI	WCGNNNNNNNCGW	2 cut(s)	97, 183
PctI	GAATGC	1 cut(s)	360
PfeI	GAWTC	3 cut(s)	470, 656, 689
PflMI	CCANNNNNTGG	1 cut(s)	162
PkrI	GCNGC	4 cut(s)	65, 196, 217, 682
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PshBI	ATTAAT	1 cut(s)	366
Psp6I	CCWGG	2 cut(s)	155, 218
PspGI	CCWGG	2 cut(s)	155, 218
PspN4I	GGNNCC	4 cut(s)	314, 404, 724, 802
PspPI	GGNCC	4 cut(s)	44, 65, 233, 722
PstI	CTGCAG	1 cut(s)	14
PstNI	CAGNNNCTG	2 cut(s)	162, 797
RsaI	GTAC	1 cut(s)	802
RsaNI	GTAC	1 cut(s)	801
RseI	CAYNNNNRTG	2 cut(s)	335, 494
SapI	GCTCTTC	1 cut(s)	822
SaqAI	TTAA	2 cut(s)	366, 414
SatI	GCNGC	4 cut(s)	64, 195, 216, 681
Sau3AI	GATC	1 cut(s)	598
Sau96I	GGNCC	4 cut(s)	44, 65, 233, 722
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	2 cut(s)	157, 220
SduI	GDGCHC	2 cut(s)	173, 633
SetI	ASST	9 cut(s)	196, 264, 414, 481, 557, 685, 799, 806, 834
SfaNI	GCATC	3 cut(s)	229, 742, 756
SfcI	CTRYAG	1 cut(s)	10
SinI	GGWCC	2 cut(s)	233, 722
SmiMI	CAYNNNNRTG	2 cut(s)	335, 494
SmlI	CTYRAG	2 cut(s)	413, 632
SmoI	CTYRAG	2 cut(s)	413, 632
Sse9I	AATT	4 cut(s)	325, 549, 716, 739
SsiI	CCGC	1 cut(s)	63
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	1 cut(s)	453
StyD4I	CCNGG	2 cut(s)	155, 218
StyI	CCWWGG	3 cut(s)	32, 198, 784
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	1 cut(s)	557
TaqI	TCGA	3 cut(s)	91, 100, 695
TasI	AATT	4 cut(s)	325, 549, 716, 739
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	3 cut(s)	470, 656, 689
Tru1I	TTAA	2 cut(s)	366, 414
Tru9I	TTAA	2 cut(s)	366, 414
TscAI	CASTG	1 cut(s)	715
TseFI	GTSAC	1 cut(s)	710
TseI	GCWGC	3 cut(s)	194, 215, 680
Tsp45I	GTSAC	1 cut(s)	710
TspDTI	ATGAA	4 cut(s)	319, 374, 383, 447
TspRI	CASTG	1 cut(s)	715
Van91I	CCANNNNNTGG	1 cut(s)	162
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	233, 722
VspI	ATTAAT	1 cut(s)	366
XagI	CCTNNNNNAGG	1 cut(s)	51
XapI	RAATTY	3 cut(s)	325, 716, 739
XcmI	CCANNNNNNNNNTGG	2 cut(s)	30, 163
XspI	CTAG	1 cut(s)	453
Zsp2I	ATGCAT	2 cut(s)	757, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.