Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0015150

Physical Location & Seq

Genomic Coordinates Reverse (-)

5966915 .. 5967772

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g05990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGATAACAGCAGAAAATCTCCGTTGAAGCCATGGAAGAAAGGCCCCACGAGAGGCAAAGGCGGCCCTCAGAACGCCTCGTGTGAGTACCGAGGCGTTCGGCAAAGAACTTGGGGCAAATGGGTGGCTGAAATCAGAGAGCCTAAGAAGAGAACCAGGCTGTGGCTGGGCTCTTTTGCTACGGCTGAGGAAGCTGCCATGGCCTATGACGATGCTGCCAGGAGACTCTATGGCCCCGAAGCTTTTCTCAACCTTCCTCACCTTCAACCCAGCTCCAATCCTTCACTCAAATCTCAAAAATTCAAGTGGTTCCCTTCCCACAACTTCATTTCCATGTTTCCTTCGTGCGGTTTGCTCAACATCAATGCGCAGCCGAGCGTTCATGTTATTCATCAGAGGCTCCAAGAACTTAAGCAAAATGGGGTTCTTGGTCACACCACCCCTTCCTCTAGTTCTTCCTCCTGTGATTCAAAACCTGAGGCTCACATCCTGAGTGACAAAACCGAGATGCGAAATGTTGCAGAGAAGGAGAAAGATGTCGAAATTTCATCTGAAAAAGCGGCGGAAGACCACCAGGAGAAGCCACAGATGGATCTCAATGAGTTTCTTCAGCAACTGGGAGTACTGACAAAGGAGACACAATCAGAGGCAACCGAGACAACGGAAAGTTTTACTGCTCCGGAATCTTCAATCGGAGAAGTTCATGATGAATTCGGACCCTTGGCTGGCAATAACATCAATTGGGATGCATTGATTGAGATGCACGGGATTTCAAACCAAGGAGCAGATGCTGGTGCCTTTCAAGTTTATGATATGAATGAAGAGCTTTCCTTCCCCACTTCCATTTGGAACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

286

Amino Acids

31.89

Weight (kDa)

5.76

Isoelectric Point (pI)

58.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	29 - 78	4.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57600
fragaria_vesca	FvH4_6g23290
malus_domestica	MD12G1067600.v1.1
prunus_persica	Prupe.7G066700_v2.0.a1
pyrus_communis	pycom12g05990 pycom14g05600
rosa_chinensis	RchiOBHm_Chr3g0481251
rosa_laevigata	RLG00000023409
rosa_multiflora	Rmu_co8499509.1_g000001 Rmu_sc0000064.1_g000006
rosa_roxburghii	Rroxscaffold_6G00400570
rosa_rugosa	Rorug03G0190600
rosa_samantha	Rh3AG241500 Rh3CG272100 Rh3DG268500
rosa_wichuraiana	Rw3G021570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	794
AccB7I	CCANNNNNTGG	1 cut(s)	162
AccIII	TCCGGA	1 cut(s)	679
AciI	CCGC	4 cut(s)	63, 348, 560, 563
AclWI	GGATC	1 cut(s)	600
AcsI	RAATTY	3 cut(s)	299, 543, 710
AcuI	CTGAAG	1 cut(s)	593
AfaI	GTAC	2 cut(s)	89, 624
AfiI	CCNNNNNNNGG	4 cut(s)	53, 162, 347, 725
AflII	CTTAAG	1 cut(s)	410
AgsI	TTSAA	7 cut(s)	28, 266, 304, 471, 690, 774, 803
AjnI	CCWGG	3 cut(s)	155, 218, 573
AluBI	AGCT	4 cut(s)	194, 242, 273, 826
AluI	AGCT	4 cut(s)	194, 242, 273, 826
Alw26I	GTCTC	3 cut(s)	217, 629, 650
AlwI	GGATC	1 cut(s)	600
AlwNI	CAGNNNCTG	2 cut(s)	616, 791
Aor13HI	TCCGGA	1 cut(s)	679
AoxI	GGCC	4 cut(s)	43, 64, 201, 232
ApeKI	GCWGC	3 cut(s)	194, 215, 370
ApoI	RAATTY	3 cut(s)	299, 543, 710
Asp700I	GAANNNNTTC	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	4 cut(s)	44, 65, 233, 716
AsuHPI	GGTGA	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	716
AxyI	CCTNAGG	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	794
BanII	GRGCYC	1 cut(s)	173
BauI	CACGAG	2 cut(s)	49, 79
BbsI	GAAGAC	1 cut(s)	573
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	3 cut(s)	181, 202, 382
BccI	CCATC	1 cut(s)	583
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	3 cut(s)	157, 220, 575
BcoDI	GTCTC	3 cut(s)	217, 629, 650
BfaI	CTAG	1 cut(s)	450
BfrI	CTTAAG	1 cut(s)	410
BisI	GCNGC	5 cut(s)	64, 195, 216, 371, 561
BlsI	GCNGC	5 cut(s)	65, 196, 217, 372, 562
BmcAI	AGTACT	1 cut(s)	624
Bme1390I	CCNGG	3 cut(s)	157, 220, 575
Bme18I	GGWCC	1 cut(s)	716
BmgT120I	GGNCC	4 cut(s)	44, 65, 233, 716
BmiI	GGNNCC	6 cut(s)	46, 235, 311, 401, 718, 796
BmrFI	CCNGG	3 cut(s)	157, 220, 575
BmrI	ACTGGG	1 cut(s)	626
BmsI	GCATC	5 cut(s)	202, 498, 736, 750, 778
BmuI	ACTGGG	1 cut(s)	626
BpiI	GAAGAC	1 cut(s)	573
Bpu10I	CCTNAGC	1 cut(s)	186
BsaJI	CCNNGG	5 cut(s)	32, 91, 198, 720, 778
BsaWI	WCCGGW	1 cut(s)	679
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 162, 347, 725
Bse1I	ACTGG	1 cut(s)	621
Bse21I	CCTNAGG	1 cut(s)	477
BseAI	TCCGGA	1 cut(s)	679
BseBI	CCWGG	3 cut(s)	157, 220, 575
BseDI	CCNNGG	5 cut(s)	32, 91, 198, 720, 778
BseGI	GGATG	2 cut(s)	486, 751
BseLI	CCNNNNNNNGG	4 cut(s)	53, 162, 347, 725
BseMII	CTCAG	4 cut(s)	83, 177, 468, 482
BseNI	ACTGG	1 cut(s)	621
BseXI	GCAGC	3 cut(s)	181, 202, 382
BseYI	CCCAGC	2 cut(s)	166, 269
BshFI	GGCC	4 cut(s)	45, 66, 203, 234
BshNI	GGYRCC	1 cut(s)	794
BsiSI	CCGG	1 cut(s)	680
BslI	CCNNNNNNNGG	4 cut(s)	53, 162, 347, 725
BsmAI	GTCTC	3 cut(s)	217, 629, 650
BsnI	GGCC	4 cut(s)	45, 66, 203, 234
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp13I	TCCGGA	1 cut(s)	679
Bsp143I	GATC	1 cut(s)	592
Bsp19I	CCATGG	2 cut(s)	32, 198
BspACI	CCGC	4 cut(s)	63, 348, 560, 563
BspANI	GGCC	4 cut(s)	45, 66, 203, 234
BspCNI	CTCAG	4 cut(s)	82, 178, 469, 483
BspEI	TCCGGA	1 cut(s)	679
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	6 cut(s)	46, 235, 311, 401, 718, 796
BspPI	GGATC	1 cut(s)	600
BspQI	GCTCTTC	1 cut(s)	816
BspT107I	GGYRCC	1 cut(s)	794
BspTI	CTTAAG	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	621
BssECI	CCNNGG	5 cut(s)	32, 91, 198, 720, 778
BssMI	GATC	1 cut(s)	592
BssSI	CACGAG	2 cut(s)	49, 79
BssT1I	CCWWGG	4 cut(s)	32, 198, 720, 778
Bst2BI	CACGAG	2 cut(s)	49, 79
Bst2UI	CCWGG	3 cut(s)	157, 220, 575
Bst6I	CTCTTC	2 cut(s)	143, 816
BstAFI	CTTAAG	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	727
BstDEI	CTNAG	5 cut(s)	69, 144, 186, 477, 491
BstDSI	CCRYGG	2 cut(s)	32, 198
BstF5I	GGATG	2 cut(s)	486, 751
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	1 cut(s)	595
BstMAI	GTCTC	3 cut(s)	217, 629, 650
BstMBI	GATC	1 cut(s)	592
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 191, 200
BstNI	CCWGG	3 cut(s)	157, 220, 575
BstSCI	CCNGG	3 cut(s)	155, 218, 573
BstV1I	GCAGC	3 cut(s)	181, 202, 382
BstV2I	GAAGAC	1 cut(s)	573
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
Bsu36I	CCTNAGG	1 cut(s)	477
BsuRI	GGCC	4 cut(s)	45, 66, 203, 234
BtgI	CCRYGG	2 cut(s)	32, 198
BtsCI	GGATG	2 cut(s)	486, 751
Cac8I	GCNNGC	1 cut(s)	727
CaiI	CAGNNNCTG	2 cut(s)	616, 791
CciI	TCATGA	1 cut(s)	703
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	4 cut(s)	44, 65, 233, 716
Csp6I	GTAC	2 cut(s)	88, 623
CviAII	CATG	5 cut(s)	33, 199, 334, 383, 704
CviQI	GTAC	2 cut(s)	88, 623
DdeI	CTNAG	5 cut(s)	69, 144, 186, 477, 491
DpnI	GATC	1 cut(s)	594
DpnII	GATC	1 cut(s)	592
Eam1104I	CTCTTC	2 cut(s)	143, 816
EarI	CTCTTC	2 cut(s)	143, 816
EciI	GGCGGA	1 cut(s)	578
Eco130I	CCWWGG	4 cut(s)	32, 198, 720, 778
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	716
Eco57I	CTGAAG	1 cut(s)	593
Eco81I	CCTNAGG	1 cut(s)	477
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	710
EcoRII	CCWGG	3 cut(s)	155, 218, 573
EcoT14I	CCWWGG	4 cut(s)	32, 198, 720, 778
EcoT22I	ATGCAT	1 cut(s)	751
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	4 cut(s)	32, 198, 720, 778
FaeI	CATG	5 cut(s)	36, 202, 337, 386, 707
FaiI	YATR	9 cut(s)	34, 200, 207, 231, 335, 384, 705, 810, 815
FatI	CATG	5 cut(s)	32, 198, 333, 382, 703
Fnu4HI	GCNGC	5 cut(s)	64, 195, 216, 371, 561
FokI	GGATG	2 cut(s)	473, 758
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	5 cut(s)	64, 195, 216, 371, 561
FspBI	CTAG	1 cut(s)	450
FspI	TGCGCA	1 cut(s)	369
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	5 cut(s)	64, 195, 216, 371, 561
GsaI	CCCAGC	2 cut(s)	170, 273
HaeIII	GGCC	4 cut(s)	45, 66, 203, 234
HapII	CCGG	1 cut(s)	680
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	5 cut(s)	36, 202, 337, 386, 707
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HindIII	AAGCTT	1 cut(s)	240
HinfI	GANTC	3 cut(s)	225, 467, 683
HpaII	CCGG	1 cut(s)	680
HphI	GGTGA	1 cut(s)	251
Hpy188I	TCNGA	7 cut(s)	72, 137, 396, 553, 646, 695, 716
Hpy188III	TCNNGA	3 cut(s)	490, 680, 704
HpyAV	CCTTC	8 cut(s)	263, 272, 291, 324, 351, 453, 520, 841
HpyCH4V	TGCA	3 cut(s)	521, 749, 763
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 191, 200
HpyF3I	CTNAG	5 cut(s)	69, 144, 186, 477, 491
Hsp92II	CATG	5 cut(s)	36, 202, 337, 386, 707
HspAI	GCGC	1 cut(s)	368
Kpn2I	TCCGGA	1 cut(s)	679
Kzo9I	GATC	1 cut(s)	592
LguI	GCTCTTC	1 cut(s)	816
LmnI	GCTCC	4 cut(s)	278, 405, 682, 782
Lsp1109I	GCAGC	3 cut(s)	181, 202, 382
LweI	GCATC	5 cut(s)	202, 498, 736, 750, 778
MaeI	CTAG	1 cut(s)	450
MaeIII	GTNAC	2 cut(s)	431, 494
MalI	GATC	1 cut(s)	594
MboI	GATC	1 cut(s)	592
MboII	GAAGA	7 cut(s)	49, 160, 447, 578, 599, 678, 833
MfeI	CAATTG	1 cut(s)	739
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	4 cut(s)	299, 543, 710, 739
MlyI	GAGTC	1 cut(s)	219
Mph1103I	ATGCAT	1 cut(s)	751
MroI	TCCGGA	1 cut(s)	679
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	332
MspCI	CTTAAG	1 cut(s)	410
MspI	CCGG	1 cut(s)	680
MspR9I	CCNGG	3 cut(s)	157, 220, 575
MunI	CAATTG	1 cut(s)	739
MvaI	CCWGG	3 cut(s)	157, 220, 575
MwoI	GCNNNNNNNGC	3 cut(s)	63, 191, 200
NcoI	CCATGG	2 cut(s)	32, 198
NdeII	GATC	1 cut(s)	592
NlaIII	CATG	5 cut(s)	36, 202, 337, 386, 707
NlaIV	GGNNCC	6 cut(s)	46, 235, 311, 401, 718, 796
NmeAIII	GCCGAG	1 cut(s)	399
NmuCI	GTSAC	2 cut(s)	431, 494
NsbI	TGCGCA	1 cut(s)	369
NsiI	ATGCAT	1 cut(s)	751
PagI	TCATGA	1 cut(s)	703
PciSI	GCTCTTC	1 cut(s)	816
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	467, 683
PflMI	CCANNNNNTGG	1 cut(s)	162
PkrI	GCNGC	5 cut(s)	65, 196, 217, 372, 562
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
Psp6I	CCWGG	3 cut(s)	155, 218, 573
PspFI	CCCAGC	2 cut(s)	166, 269
PspGI	CCWGG	3 cut(s)	155, 218, 573
PspN4I	GGNNCC	6 cut(s)	46, 235, 311, 401, 718, 796
PspPI	GGNCC	4 cut(s)	44, 65, 233, 716
PstNI	CAGNNNCTG	2 cut(s)	616, 791
PsuI	RGATCY	1 cut(s)	592
RsaI	GTAC	2 cut(s)	89, 624
RsaNI	GTAC	2 cut(s)	88, 623
RseI	CAYNNNNRTG	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	816
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	5 cut(s)	64, 195, 216, 371, 561
Sau3AI	GATC	1 cut(s)	592
Sau96I	GGNCC	4 cut(s)	44, 65, 233, 716
ScaI	AGTACT	1 cut(s)	624
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	3 cut(s)	157, 220, 575
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	7 cut(s)	196, 244, 255, 264, 275, 478, 828
SfaNI	GCATC	5 cut(s)	202, 498, 736, 750, 778
SinI	GGWCC	1 cut(s)	716
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	4 cut(s)	299, 543, 710, 739
SsiI	CCGC	4 cut(s)	63, 348, 560, 563
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	3 cut(s)	155, 218, 573
StyI	CCWWGG	4 cut(s)	32, 198, 720, 778
TaqI	TCGA	1 cut(s)	540
TasI	AATT	4 cut(s)	299, 543, 710, 739
TatI	WGTACW	1 cut(s)	622
TauI	GCSGC	2 cut(s)	66, 563
TfiI	GAWTC	2 cut(s)	467, 683
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseFI	GTSAC	2 cut(s)	431, 494
TseI	GCWGC	3 cut(s)	194, 215, 370
Tsp45I	GTSAC	2 cut(s)	431, 494
TspDTI	ATGAA	8 cut(s)	316, 371, 380, 537, 692, 723, 830, 834
TspGWI	ACGGA	2 cut(s)	12, 677
Van91I	CCANNNNNTGG	1 cut(s)	162
Vha464I	CTTAAG	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	716
XapI	RAATTY	3 cut(s)	299, 543, 710
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	1 cut(s)	450
ZrmI	AGTACT	1 cut(s)	624
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.