Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001342

Physical Location & Seq

Genomic Coordinates Forward (+)

16713891 .. 16717040

Gene Structure 3150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0190600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCGGAAGAGCACAGATGCCAAGCACCAGAAGGTCTCCGTCTCTGCGCTAACAACTGCGGATTCTTCGGCAGCCCGGCCACCATGAATCTCTGCTCCAAATGTTACAGAGACTTTTGCCTCAAGGAGCAACAGGAGGCCTCCATCAAATCCACCGTCGAAGCCTCTCTCTCCGCCTCCGCGGCCGCCTCTTCATCGGCCTCGTCTTCCTCCTCATCTCCGGTGATTGACTTCCGCTCTCTCCCTCCGCCTCCGCTGTTGACTTTGCCGGAGGTCGCCGAGGCCGAAGATGTTCCCACTCCTCCAGAGGTCGCCGCCCCGGCGGTGTCGCAGCCGAACCGGTGCAACGTCTGCCGGAAACGGGTCGGGTTGACCGGGTTCAAGTGCAAGTGCGGGACCACCTTCTGCGGGGTCCACCGTTACCCGGAGAAGCACGCGTGCTCGTTCGACTTCAAGACGGTCGGGAAGGAGGAGATCGCGAGGAGCAATCCGGTGATCAAAGCAGAGAAGCTCGAGAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

174

Amino Acids

18.69

Weight (kDa)

7.96

Isoelectric Point (pI)

56.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	14 - 37	2.1e-13	A20-like zinc finger
zf-AN1	PF01428	115 - 151	8.7e-10	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001342)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11840 FvH4_5g11840 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300
malus_domestica	MD06G1218200.v1.1 MD12G1067700.v1.1 MD12G1067800.v1.1 MD14G1067900.v1.1
prunus_persica	Prupe.5G223300_v2.0.a1 Prupe.7G066400_v2.0.a1 Prupe.7G066400_v2.0.a1 Prupe.7G066400_v2.0.a1
pyrus_communis	pycom06g19440
rosa_chinensis	RchiOBHm_Chr3g0481261 RchiOBHm_Chr5g0000181
rosa_laevigata	RLG00000023408 RLG00000030848
rosa_multiflora	Rmu_co8437141.1_g000001 Rmu_ssc0000243.1_g000012
rosa_roxburghii	Rroxscaffold_1G00075910 Rroxscaffold_6G00400560
rosa_rugosa	Rorug03G0190600 Rorug03G0190700 Rorug03G0190800 Rorug04G0382200 Rorug04G0382300.1 Rorug04G0382400
rosa_samantha	Rh3AG241600 Rh3BG276900 Rh3CG272200 Rh3DG268600 Rh5AG001300 Rh5BG002700 Rh5CG001400 Rh5DG001400 Rh7BG168100
rosa_wichuraiana	Rw3G021580 Rw5G000170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	237
AccII	CGCG	3 cut(s)	182, 437, 479
AcoI	YGGCCR	2 cut(s)	78, 183
AfiI	CCNNNNNNNGG	3 cut(s)	361, 408, 424
AflIII	ACRYGT	1 cut(s)	435
AgeI	ACCGGT	1 cut(s)	339
AgsI	TTSAA	2 cut(s)	382, 454
AluBI	AGCT	1 cut(s)	511
AluI	AGCT	1 cut(s)	511
Alw21I	GWGCWC	2 cut(s)	15, 443
Alw26I	GTCTC	3 cut(s)	41, 47, 105
Ama87I	CYCGRG	1 cut(s)	512
AoxI	GGCC	5 cut(s)	78, 138, 183, 198, 282
ApeKI	GCWGC	2 cut(s)	72, 331
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AsiGI	ACCGGT	1 cut(s)	339
Asp700I	GAANNNNTTC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	396, 412
AsuC2I	CCSGG	4 cut(s)	77, 320, 376, 425
AsuHPI	GGTGA	2 cut(s)	235, 505
AvaI	CYCGRG	1 cut(s)	512
AvaII	GGWCC	2 cut(s)	396, 412
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	2 cut(s)	15, 443
BbvI	GCAGC	2 cut(s)	84, 343
BccI	CCATC	1 cut(s)	152
BclI	TGATCA	1 cut(s)	495
BcnI	CCSGG	4 cut(s)	77, 320, 376, 425
BcoDI	GTCTC	3 cut(s)	41, 47, 105
BglI	GCCNNNNNGGC	2 cut(s)	182, 320
BisI	GCNGC	5 cut(s)	73, 183, 186, 315, 332
BlsI	GCNGC	5 cut(s)	74, 184, 187, 316, 333
Bme1390I	CCNGG	4 cut(s)	77, 320, 376, 425
Bme18I	GGWCC	2 cut(s)	396, 412
BmeT110I	CYCGRG	1 cut(s)	512
BmgT120I	GGNCC	2 cut(s)	396, 412
BmiI	GGNNCC	2 cut(s)	397, 413
BmrFI	CCNGG	4 cut(s)	77, 320, 376, 425
BmsI	GCATC	1 cut(s)	8
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	4 cut(s)	77, 320, 376, 425
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	3 cut(s)	180, 279, 318
BsaWI	WCCGGW	3 cut(s)	220, 339, 490
Bsc4I	CCNNNNNNNGG	3 cut(s)	361, 408, 424
Bse118I	RCCGGY	1 cut(s)	339
BseDI	CCNNGG	3 cut(s)	180, 279, 318
BseLI	CCNNNNNNNGG	3 cut(s)	361, 408, 424
BseRI	GAGGAG	4 cut(s)	202, 291, 485, 496
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	84, 343
Bsh1236I	CGCG	3 cut(s)	182, 437, 479
Bsh1285I	CGRYCG	2 cut(s)	186, 462
BshFI	GGCC	5 cut(s)	80, 140, 185, 200, 284
BshTI	ACCGGT	1 cut(s)	339
BsiEI	CGRYCG	2 cut(s)	186, 462
BsiHKAI	GWGCWC	2 cut(s)	15, 443
BsiHKCI	CYCGRG	1 cut(s)	512
BsiSI	CCGG	9 cut(s)	77, 221, 269, 320, 340, 355, 375, 425, 491
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	3 cut(s)	361, 408, 424
BsmAI	GTCTC	3 cut(s)	41, 47, 105
BsmBI	CGTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	409
BsnI	GGCC	5 cut(s)	80, 140, 185, 200, 284
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	512
Bsp1286I	GDGCHC	2 cut(s)	15, 443
Bsp143I	GATC	2 cut(s)	474, 495
Bsp68I	TCGCGA	1 cut(s)	479
BspANI	GGCC	5 cut(s)	80, 140, 185, 200, 284
BspFNI	CGCG	3 cut(s)	182, 437, 479
BspLI	GGNNCC	2 cut(s)	397, 413
BspQI	GCTCTTC	1 cut(s)	3
BspTNI	GGTCTC	1 cut(s)	41
BsrBI	CCGCTC	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	339
BssAI	RCCGGY	1 cut(s)	339
BssECI	CCNNGG	3 cut(s)	180, 279, 318
BssMI	GATC	2 cut(s)	474, 495
Bst4CI	ACNGT	3 cut(s)	157, 419, 460
Bst6I	CTCTTC	2 cut(s)	3, 196
BstAPI	GCANNNNNTGC	1 cut(s)	351
BstC8I	GCNNGC	2 cut(s)	435, 439
BstDSI	CCRYGG	1 cut(s)	180
BstFNI	CGCG	3 cut(s)	182, 437, 479
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	2 cut(s)	477, 498
BstMAI	GTCTC	3 cut(s)	41, 47, 105
BstMBI	GATC	2 cut(s)	474, 495
BstMCI	CGRYCG	2 cut(s)	186, 462
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 320, 351
BstSCI	CCNGG	4 cut(s)	75, 318, 374, 423
BstUI	CGCG	3 cut(s)	182, 437, 479
BstV1I	GCAGC	2 cut(s)	84, 343
BstV2I	GAAGAC	1 cut(s)	198
BstZI	CGGCCG	1 cut(s)	183
BsuRI	GGCC	5 cut(s)	80, 140, 185, 200, 284
BtgI	CCRYGG	1 cut(s)	180
BtuMI	TCGCGA	1 cut(s)	479
Cac8I	GCNNGC	2 cut(s)	435, 439
CciNI	GCGGCCGC	1 cut(s)	183
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	339
Cfr13I	GGNCC	2 cut(s)	396, 412
Cfr42I	CCGCGG	1 cut(s)	183
CspAI	ACCGGT	1 cut(s)	339
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	9 cut(s)	75, 80, 140, 164, 185, 200, 284, 334, 511
CviKI_1	RGCY	9 cut(s)	75, 80, 140, 164, 185, 200, 284, 334, 511
DpnI	GATC	2 cut(s)	476, 497
DpnII	GATC	2 cut(s)	474, 495
EaeI	YGGCCR	2 cut(s)	78, 183
EagI	CGGCCG	1 cut(s)	183
Eam1104I	CTCTTC	2 cut(s)	3, 196
EarI	CTCTTC	2 cut(s)	3, 196
EciI	GGCGGA	3 cut(s)	20, 163, 237
EclXI	CGGCCG	1 cut(s)	183
Eco147I	AGGCCT	1 cut(s)	140
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	2 cut(s)	396, 412
Eco52I	CGGCCG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	512
Esp3I	CGTCTC	1 cut(s)	47
FaeI	CATG	1 cut(s)	88
FaiI	YATR	1 cut(s)	86
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	1 cut(s)	84
FauI	CCCGC	2 cut(s)	386, 401
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	5 cut(s)	73, 183, 186, 315, 332
Fsp4HI	GCNGC	5 cut(s)	73, 183, 186, 315, 332
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	5 cut(s)	73, 183, 186, 315, 332
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	5 cut(s)	80, 140, 185, 200, 284
HapII	CCGG	9 cut(s)	77, 221, 269, 320, 340, 355, 375, 425, 491
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	2 cut(s)	261, 372
HindII	GTYRAC	2 cut(s)	261, 372
HinfI	GANTC	2 cut(s)	63, 88
HpaII	CCGG	9 cut(s)	77, 221, 269, 320, 340, 355, 375, 425, 491
HphI	GGTGA	2 cut(s)	235, 505
Hpy166II	GTNNAC	3 cut(s)	261, 372, 415
Hpy188III	TCNNGA	5 cut(s)	305, 454, 463, 478, 514
Hpy8I	GTNNAC	3 cut(s)	261, 372, 415
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	3 cut(s)	26, 412, 460
HpyCH4III	ACNGT	3 cut(s)	157, 419, 460
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	2 cut(s)	345, 387
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 320, 351
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	1 cut(s)	48
Ksp22I	TGATCA	1 cut(s)	495
KspI	CCGCGG	1 cut(s)	183
Kzo9I	GATC	2 cut(s)	474, 495
LguI	GCTCTTC	1 cut(s)	3
LmnI	GCTCC	3 cut(s)	101, 127, 483
Lsp1109I	GCAGC	2 cut(s)	84, 343
LweI	GCATC	1 cut(s)	8
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	2 cut(s)	104, 419
MalI	GATC	2 cut(s)	476, 497
MbiI	CCGCTC	1 cut(s)	237
MboI	GATC	2 cut(s)	474, 495
MboII	GAAGA	5 cut(s)	20, 58, 183, 198, 299
MhlI	GDGCHC	2 cut(s)	15, 443
MluI	ACGCGT	1 cut(s)	435
MroXI	GAANNNNTTC	1 cut(s)	291
MspA1I	CMGCKG	2 cut(s)	182, 256
MspI	CCGG	9 cut(s)	77, 221, 269, 320, 340, 355, 375, 425, 491
MspR9I	CCNGG	4 cut(s)	77, 320, 376, 425
MvnI	CGCG	3 cut(s)	182, 437, 479
MwoI	GCNNNNNNNGC	3 cut(s)	182, 320, 351
NciI	CCSGG	4 cut(s)	77, 320, 376, 425
NdeII	GATC	2 cut(s)	474, 495
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	2 cut(s)	397, 413
NmeAIII	GCCGAG	1 cut(s)	304
NotI	GCGGCCGC	1 cut(s)	183
NruI	TCGCGA	1 cut(s)	479
PaeR7I	CTCGAG	1 cut(s)	512
PceI	AGGCCT	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	3
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	63, 88
PinAI	ACCGGT	1 cut(s)	339
PkrI	GCNGC	5 cut(s)	74, 184, 187, 316, 333
PspN4I	GGNNCC	2 cut(s)	397, 413
PspPI	GGNCC	2 cut(s)	396, 412
RruI	TCGCGA	1 cut(s)	479
SacII	CCGCGG	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	3
SatI	GCNGC	5 cut(s)	73, 183, 186, 315, 332
Sau3AI	GATC	2 cut(s)	474, 495
Sau96I	GGNCC	2 cut(s)	396, 412
ScrFI	CCNGG	4 cut(s)	77, 320, 376, 425
SduI	GDGCHC	2 cut(s)	15, 443
SetI	ASST	6 cut(s)	37, 276, 312, 351, 404, 513
SfaNI	GCATC	1 cut(s)	8
Sfr274I	CTCGAG	1 cut(s)	512
Sfr303I	CCGCGG	1 cut(s)	183
SgrBI	CCGCGG	1 cut(s)	183
SinI	GGWCC	2 cut(s)	396, 412
SlaI	CTCGAG	1 cut(s)	512
SmlI	CTYRAG	2 cut(s)	122, 512
SmoI	CTYRAG	2 cut(s)	122, 512
SseBI	AGGCCT	1 cut(s)	140
StuI	AGGCCT	1 cut(s)	140
StyD4I	CCNGG	4 cut(s)	75, 318, 374, 423
TaaI	ACNGT	3 cut(s)	157, 419, 460
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	3 cut(s)	159, 447, 513
TauI	GCSGC	3 cut(s)	185, 188, 317
TfiI	GAWTC	2 cut(s)	63, 88
TseI	GCWGC	2 cut(s)	72, 331
TspDTI	ATGAA	2 cut(s)	101, 183
TspGWI	ACGGA	1 cut(s)	29
VpaK11BI	GGWCC	2 cut(s)	396, 412
XhoI	CTCGAG	1 cut(s)	512
XmnI	GAANNNNTTC	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.