PHD zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2206 |
| AciI | CCGC | 2 cut(s) | 662, 1697 |
| AclWI | GGATC | 6 cut(s) | 135, 453, 719, 732, 1440, 1453 |
| AcsI | RAATTY | 2 cut(s) | 258, 1369 |
| AcuI | CTGAAG | 3 cut(s) | 459, 549, 1118 |
| AfaI | GTAC | 5 cut(s) | 480, 660, 1646, 2124, 2205 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 269, 757, 798, 1699, 1876, 2206 |
| AflII | CTTAAG | 1 cut(s) | 2311 |
| AflIII | ACRYGT | 3 cut(s) | 304, 1100, 2011 |
| AgsI | TTSAA | 4 cut(s) | 194, 1059, 1142, 1802 |
| AjiI | CACGTC | 2 cut(s) | 337, 1593 |
| AjnI | CCWGG | 1 cut(s) | 727 |
| AluBI | AGCT | 6 cut(s) | 60, 1138, 1483, 1805, 2129, 2267 |
| AluI | AGCT | 6 cut(s) | 60, 1138, 1483, 1805, 2129, 2267 |
| Alw21I | GWGCWC | 2 cut(s) | 73, 1485 |
| Alw26I | GTCTC | 1 cut(s) | 1502 |
| AlwI | GGATC | 6 cut(s) | 135, 453, 719, 732, 1440, 1453 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 893, 1193 |
| Ama87I | CYCGRG | 1 cut(s) | 483 |
| AoxI | GGCC | 4 cut(s) | 505, 951, 1834, 2179 |
| ApeKI | GCWGC | 7 cut(s) | 60, 398, 423, 1163, 1553, 2287, 2290 |
| ApoI | RAATTY | 2 cut(s) | 258, 1369 |
| AspS9I | GGNCC | 2 cut(s) | 951, 2069 |
| AsuHPI | GGTGA | 4 cut(s) | 602, 755, 2144, 2225 |
| AsuII | TTCGAA | 1 cut(s) | 1319 |
| AvaI | CYCGRG | 1 cut(s) | 483 |
| AvaII | GGWCC | 1 cut(s) | 2069 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 462, 495 |
| BamHI | GGATCC | 2 cut(s) | 724, 1445 |
| BanII | GRGCYC | 1 cut(s) | 1485 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1039, 1071 |
| Bbv12I | GWGCWC | 2 cut(s) | 73, 1485 |
| BbvCI | CCTCAGC | 1 cut(s) | 1726 |
| BbvI | GCAGC | 7 cut(s) | 47, 385, 435, 1150, 1540, 2299, 2302 |
| BceAI | ACGGC | 1 cut(s) | 733 |
| BciT130I | CCWGG | 1 cut(s) | 729 |
| BciVI | GTATCC | 1 cut(s) | 481 |
| BclI | TGATCA | 1 cut(s) | 2215 |
| BcoDI | GTCTC | 1 cut(s) | 1502 |
| BfaI | CTAG | 5 cut(s) | 587, 1596, 1806, 1920, 1970 |
| BfmI | CTRYAG | 2 cut(s) | 64, 831 |
| BfrI | CTTAAG | 1 cut(s) | 2311 |
| BfuI | GTATCC | 1 cut(s) | 481 |
| BglII | AGATCT | 1 cut(s) | 1580 |
| BisI | GCNGC | 7 cut(s) | 61, 399, 424, 1164, 1554, 2288, 2291 |
| BlsI | GCNGC | 7 cut(s) | 62, 400, 425, 1165, 1555, 2289, 2292 |
| BmcAI | AGTACT | 1 cut(s) | 2205 |
| Bme1390I | CCNGG | 1 cut(s) | 729 |
| Bme18I | GGWCC | 1 cut(s) | 2069 |
| BmeT110I | CYCGRG | 1 cut(s) | 483 |
| BmgBI | CACGTC | 2 cut(s) | 337, 1593 |
| BmgT120I | GGNCC | 2 cut(s) | 951, 2069 |
| BmiI | GGNNCC | 3 cut(s) | 726, 1447, 1881 |
| BmrFI | CCNGG | 1 cut(s) | 729 |
| BmsI | GCATC | 9 cut(s) | 205, 421, 634, 799, 1003, 1160, 1540, 1975, 2260 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1619 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 2314 |
| BpmI | CTGGAG | 1 cut(s) | 1152 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1197, 1726 |
| Bpu14I | TTCGAA | 1 cut(s) | 1319 |
| BpuEI | CTTGAG | 2 cut(s) | 1050, 1597 |
| BsaJI | CCNNGG | 2 cut(s) | 482, 2257 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2229, 2259 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 269, 757, 798, 1699, 1876, 2206 |
| Bse1I | ACTGG | 6 cut(s) | 311, 887, 1718, 2035, 2211, 2226 |
| Bse3DI | GCAATG | 4 cut(s) | 363, 553, 706, 1461 |
| BseBI | CCWGG | 1 cut(s) | 729 |
| BseDI | CCNNGG | 2 cut(s) | 482, 2257 |
| BseGI | GGATG | 5 cut(s) | 220, 671, 814, 967, 1087 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 269, 757, 798, 1699, 1876, 2206 |
| BseMI | GCAATG | 4 cut(s) | 363, 553, 706, 1461 |
| BseMII | CTCAG | 4 cut(s) | 111, 885, 1740, 2154 |
| BseNI | ACTGG | 6 cut(s) | 311, 887, 1718, 2035, 2211, 2226 |
| BseRI | GAGGAG | 1 cut(s) | 573 |
| BseXI | GCAGC | 7 cut(s) | 47, 385, 435, 1150, 1540, 2299, 2302 |
| BseYI | CCCAGC | 5 cut(s) | 597, 720, 1179, 1359, 1449 |
| BsgI | GTGCAG | 1 cut(s) | 2306 |
| BshFI | GGCC | 4 cut(s) | 507, 953, 1836, 2181 |
| BsiHKAI | GWGCWC | 2 cut(s) | 73, 1485 |
| BsiHKCI | CYCGRG | 1 cut(s) | 483 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 269, 757, 798, 1699, 1876, 2206 |
| BsmAI | GTCTC | 1 cut(s) | 1502 |
| BsnI | GGCC | 4 cut(s) | 507, 953, 1836, 2181 |
| BsoBI | CYCGRG | 1 cut(s) | 483 |
| Bsp119I | TTCGAA | 1 cut(s) | 1319 |
| Bsp1286I | GDGCHC | 2 cut(s) | 73, 1485 |
| Bsp143I | GATC | 6 cut(s) | 140, 445, 724, 1445, 1580, 2215 |
| BspACI | CCGC | 2 cut(s) | 662, 1697 |
| BspANI | GGCC | 4 cut(s) | 507, 953, 1836, 2181 |
| BspCNI | CTCAG | 4 cut(s) | 110, 886, 1739, 2155 |
| BspHI | TCATGA | 4 cut(s) | 967, 1534, 1600, 1705 |
| BspLI | GGNNCC | 3 cut(s) | 726, 1447, 1881 |
| BspPI | GGATC | 6 cut(s) | 135, 453, 719, 732, 1440, 1453 |
| BspQI | GCTCTTC | 2 cut(s) | 1271, 1968 |
| BspT104I | TTCGAA | 1 cut(s) | 1319 |
| BspTI | CTTAAG | 1 cut(s) | 2311 |
| BsrDI | GCAATG | 4 cut(s) | 363, 553, 706, 1461 |
| BsrI | ACTGG | 6 cut(s) | 311, 887, 1718, 2035, 2211, 2226 |
| BssECI | CCNNGG | 2 cut(s) | 482, 2257 |
| BssMI | GATC | 6 cut(s) | 140, 445, 724, 1445, 1580, 2215 |
| BssT1I | CCWWGG | 1 cut(s) | 2257 |
| Bst2UI | CCWGG | 1 cut(s) | 729 |
| Bst4CI | ACNGT | 7 cut(s) | 234, 389, 828, 1189, 1621, 1649, 1871 |
| Bst6I | CTCTTC | 3 cut(s) | 1271, 1885, 1968 |
| BstAFI | CTTAAG | 1 cut(s) | 2311 |
| BstBI | TTCGAA | 1 cut(s) | 1319 |
| BstC8I | GCNNGC | 2 cut(s) | 1569, 2179 |
| BstF5I | GGATG | 5 cut(s) | 220, 671, 814, 967, 1087 |
| BstKTI | GATC | 6 cut(s) | 143, 448, 727, 1448, 1583, 2218 |
| BstMAI | GTCTC | 1 cut(s) | 1502 |
| BstMBI | GATC | 6 cut(s) | 140, 445, 724, 1445, 1580, 2215 |
| BstNI | CCWGG | 1 cut(s) | 729 |
| BstNSI | RCATGY | 4 cut(s) | 308, 1104, 1571, 2015 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1619 |
| BstSCI | CCNGG | 1 cut(s) | 727 |
| BstSFI | CTRYAG | 2 cut(s) | 64, 831 |
| BstV1I | GCAGC | 7 cut(s) | 47, 385, 435, 1150, 1540, 2299, 2302 |
| BstX2I | RGATCY | 4 cut(s) | 140, 724, 1445, 1580 |
| BstYI | RGATCY | 4 cut(s) | 140, 724, 1445, 1580 |
| BsuI | GTATCC | 1 cut(s) | 481 |
| BsuRI | GGCC | 4 cut(s) | 507, 953, 1836, 2181 |
| BtgZI | GCGATG | 1 cut(s) | 441 |
| BtrI | CACGTC | 2 cut(s) | 337, 1593 |
| BtsCI | GGATG | 5 cut(s) | 220, 671, 814, 967, 1087 |
| BtsIMutI | CAGTG | 5 cut(s) | 394, 1194, 1213, 1402, 2088 |
| Cac8I | GCNNGC | 2 cut(s) | 1569, 2179 |
| CaiI | CAGNNNCTG | 2 cut(s) | 893, 1193 |
| CciI | TCATGA | 4 cut(s) | 967, 1534, 1600, 1705 |
| Cfr13I | GGNCC | 2 cut(s) | 951, 2069 |
| CseI | GACGC | 1 cut(s) | 390 |
| Csp6I | GTAC | 5 cut(s) | 479, 659, 1645, 2123, 2204 |
| CviQI | GTAC | 5 cut(s) | 479, 659, 1645, 2123, 2204 |
| DpnI | GATC | 6 cut(s) | 142, 447, 726, 1447, 1582, 2217 |
| DpnII | GATC | 6 cut(s) | 140, 445, 724, 1445, 1580, 2215 |
| Eam1104I | CTCTTC | 3 cut(s) | 1271, 1885, 1968 |
| EarI | CTCTTC | 3 cut(s) | 1271, 1885, 1968 |
| Ecl136II | GAGCTC | 1 cut(s) | 1483 |
| Eco130I | CCWWGG | 1 cut(s) | 2257 |
| Eco147I | AGGCCT | 2 cut(s) | 1836, 2181 |
| Eco24I | GRGCYC | 1 cut(s) | 1485 |
| Eco47I | GGWCC | 1 cut(s) | 2069 |
| Eco53kI | GAGCTC | 1 cut(s) | 1483 |
| Eco57I | CTGAAG | 3 cut(s) | 459, 549, 1118 |
| Eco88I | CYCGRG | 1 cut(s) | 483 |
| EcoICRI | GAGCTC | 1 cut(s) | 1483 |
| EcoO109I | RGGNCCY | 1 cut(s) | 951 |
| EcoRI | GAATTC | 1 cut(s) | 1369 |
| EcoRII | CCWGG | 1 cut(s) | 727 |
| EcoT14I | CCWWGG | 1 cut(s) | 2257 |
| EcoT22I | ATGCAT | 1 cut(s) | 1846 |
| EcoT38I | GRGCYC | 1 cut(s) | 1485 |
| ErhI | CCWWGG | 1 cut(s) | 2257 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1736, 1768 |
| FauNDI | CATATG | 3 cut(s) | 223, 1435, 1774 |
| FbaI | TGATCA | 1 cut(s) | 2215 |
| Fnu4HI | GCNGC | 7 cut(s) | 61, 399, 424, 1164, 1554, 2288, 2291 |
| FokI | GGATG | 5 cut(s) | 227, 658, 821, 974, 1094 |
| FriOI | GRGCYC | 1 cut(s) | 1485 |
| Fsp4HI | GCNGC | 7 cut(s) | 61, 399, 424, 1164, 1554, 2288, 2291 |
| FspBI | CTAG | 5 cut(s) | 587, 1596, 1806, 1920, 1970 |
| GluI | GCNGC | 7 cut(s) | 61, 399, 424, 1164, 1554, 2288, 2291 |
| GsaI | CCCAGC | 5 cut(s) | 601, 724, 1183, 1363, 1453 |
| GsuI | CTGGAG | 1 cut(s) | 1152 |
| HaeIII | GGCC | 4 cut(s) | 507, 953, 1836, 2181 |
| HgaI | GACGC | 1 cut(s) | 390 |
| HincII | GTYRAC | 2 cut(s) | 1094, 2254 |
| HindII | GTYRAC | 2 cut(s) | 1094, 2254 |
| HphI | GGTGA | 4 cut(s) | 602, 755, 2144, 2225 |
| Hpy166II | GTNNAC | 5 cut(s) | 31, 548, 1094, 1400, 2254 |
| Hpy8I | GTNNAC | 5 cut(s) | 31, 548, 1094, 1400, 2254 |
| HpyAV | CCTTC | 9 cut(s) | 83, 129, 704, 1649, 1738, 1774, 2085, 2135, 2204 |
| HpyCH4III | ACNGT | 7 cut(s) | 234, 389, 828, 1189, 1621, 1649, 1871 |
| HpyCH4IV | ACGT | 4 cut(s) | 293, 336, 1592, 1720 |
| HpySE526I | ACGT | 4 cut(s) | 293, 336, 1592, 1720 |
| Ksp22I | TGATCA | 1 cut(s) | 2215 |
| Kzo9I | GATC | 6 cut(s) | 140, 445, 724, 1445, 1580, 2215 |
| LguI | GCTCTTC | 2 cut(s) | 1271, 1968 |
| LmnI | GCTCC | 4 cut(s) | 361, 586, 1171, 2322 |
| Lsp1109I | GCAGC | 7 cut(s) | 47, 385, 435, 1150, 1540, 2299, 2302 |
| LweI | GCATC | 9 cut(s) | 205, 421, 634, 799, 1003, 1160, 1540, 1975, 2260 |
| MaeI | CTAG | 5 cut(s) | 587, 1596, 1806, 1920, 1970 |
| MaeII | ACGT | 4 cut(s) | 293, 336, 1592, 1720 |
| MaeIII | GTNAC | 5 cut(s) | 332, 383, 908, 1612, 1748 |
| MalI | GATC | 6 cut(s) | 142, 447, 726, 1447, 1582, 2217 |
| MboI | GATC | 6 cut(s) | 140, 445, 724, 1445, 1580, 2215 |
| MflI | RGATCY | 4 cut(s) | 140, 724, 1445, 1580 |
| MhlI | GDGCHC | 2 cut(s) | 73, 1485 |
| MlyI | GAGTC | 4 cut(s) | 992, 1036, 1511, 1902 |
| MmeI | TCCRAC | 3 cut(s) | 494, 1014, 1867 |
| MnlI | CCTC | 9 cut(s) | 229, 492, 594, 792, 934, 952, 1074, 1735, 2255 |
| Mph1103I | ATGCAT | 1 cut(s) | 1846 |
| MseI | TTAA | 7 cut(s) | 753, 902, 1107, 1236, 1416, 1826, 2312 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1058, 1101, 1299, 2016 |
| MspA1I | CMGCKG | 1 cut(s) | 2129 |
| MspCI | CTTAAG | 1 cut(s) | 2311 |
| MspR9I | CCNGG | 1 cut(s) | 729 |
| MvaI | CCWGG | 1 cut(s) | 729 |
| NdeI | CATATG | 3 cut(s) | 223, 1435, 1774 |
| NdeII | GATC | 6 cut(s) | 140, 445, 724, 1445, 1580, 2215 |
| NlaIV | GGNNCC | 3 cut(s) | 726, 1447, 1881 |
| NmuCI | GTSAC | 4 cut(s) | 332, 383, 908, 1612 |
| NsiI | ATGCAT | 1 cut(s) | 1846 |
| NspI | RCATGY | 4 cut(s) | 308, 1104, 1571, 2015 |
| NspV | TTCGAA | 1 cut(s) | 1319 |
| PaeI | GCATGC | 1 cut(s) | 1571 |
| PagI | TCATGA | 4 cut(s) | 967, 1534, 1600, 1705 |
| PceI | AGGCCT | 2 cut(s) | 1836, 2181 |
| PciI | ACATGT | 3 cut(s) | 304, 1100, 2011 |
| PciSI | GCTCTTC | 2 cut(s) | 1271, 1968 |
| PfeI | GAWTC | 7 cut(s) | 173, 621, 683, 866, 1175, 1406, 1604 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2206 |
| PfoI | TCCNGGA | 1 cut(s) | 727 |
| PkrI | GCNGC | 7 cut(s) | 62, 400, 425, 1165, 1555, 2289, 2292 |
| PleI | GAGTC | 4 cut(s) | 991, 1035, 1510, 1901 |
| PpsI | GAGTC | 4 cut(s) | 991, 1035, 1510, 1901 |
| PscI | ACATGT | 3 cut(s) | 304, 1100, 2011 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1619 |
| Psp124BI | GAGCTC | 1 cut(s) | 1485 |
| Psp6I | CCWGG | 1 cut(s) | 727 |
| PspFI | CCCAGC | 5 cut(s) | 597, 720, 1179, 1359, 1449 |
| PspGI | CCWGG | 1 cut(s) | 727 |
| PspN4I | GGNNCC | 3 cut(s) | 726, 1447, 1881 |
| PspPI | GGNCC | 2 cut(s) | 951, 2069 |
| PstNI | CAGNNNCTG | 2 cut(s) | 893, 1193 |
| PsuI | RGATCY | 4 cut(s) | 140, 724, 1445, 1580 |
| PvuII | CAGCTG | 1 cut(s) | 2129 |
| RsaI | GTAC | 5 cut(s) | 480, 660, 1646, 2124, 2205 |
| RsaNI | GTAC | 5 cut(s) | 479, 659, 1645, 2123, 2204 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1058, 1101, 1299, 2016 |
| SacI | GAGCTC | 1 cut(s) | 1485 |
| SapI | GCTCTTC | 2 cut(s) | 1271, 1968 |
| SaqAI | TTAA | 7 cut(s) | 753, 902, 1107, 1236, 1416, 1826, 2312 |
| SatI | GCNGC | 7 cut(s) | 61, 399, 424, 1164, 1554, 2288, 2291 |
| Sau3AI | GATC | 6 cut(s) | 140, 445, 724, 1445, 1580, 2215 |
| Sau96I | GGNCC | 2 cut(s) | 951, 2069 |
| ScaI | AGTACT | 1 cut(s) | 2205 |
| SchI | GAGTC | 4 cut(s) | 992, 1036, 1511, 1902 |
| ScrFI | CCNGG | 1 cut(s) | 729 |
| SduI | GDGCHC | 2 cut(s) | 73, 1485 |
| SfaNI | GCATC | 9 cut(s) | 205, 421, 634, 799, 1003, 1160, 1540, 1975, 2260 |
| SfcI | CTRYAG | 2 cut(s) | 64, 831 |
| SfuI | TTCGAA | 1 cut(s) | 1319 |
| SinI | GGWCC | 1 cut(s) | 2069 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1058, 1101, 1299, 2016 |
| SmlI | CTYRAG | 3 cut(s) | 1065, 1576, 2311 |
| SmoI | CTYRAG | 3 cut(s) | 1065, 1576, 2311 |
| SphI | GCATGC | 1 cut(s) | 1571 |
| SseBI | AGGCCT | 2 cut(s) | 1836, 2181 |
| SsiI | CCGC | 2 cut(s) | 662, 1697 |
| SspI | AATATT | 1 cut(s) | 2047 |
| SspMI | CTAG | 5 cut(s) | 587, 1596, 1806, 1920, 1970 |
| SstI | GAGCTC | 1 cut(s) | 1485 |
| StuI | AGGCCT | 2 cut(s) | 1836, 2181 |
| StyD4I | CCNGG | 1 cut(s) | 727 |
| StyI | CCWWGG | 1 cut(s) | 2257 |
| TaaI | ACNGT | 7 cut(s) | 234, 389, 828, 1189, 1621, 1649, 1871 |
| TaiI | ACGT | 4 cut(s) | 296, 339, 1595, 1723 |
| TaqI | TCGA | 1 cut(s) | 1319 |
| TatI | WGTACW | 1 cut(s) | 2203 |
| TfiI | GAWTC | 7 cut(s) | 173, 621, 683, 866, 1175, 1406, 1604 |
| Tru1I | TTAA | 7 cut(s) | 753, 902, 1107, 1236, 1416, 1826, 2312 |
| Tru9I | TTAA | 7 cut(s) | 753, 902, 1107, 1236, 1416, 1826, 2312 |
| TscAI | CASTG | 5 cut(s) | 394, 1194, 1213, 1402, 2095 |
| TseFI | GTSAC | 4 cut(s) | 332, 383, 908, 1612 |
| TseI | GCWGC | 7 cut(s) | 60, 398, 423, 1163, 1553, 2287, 2290 |
| Tsp45I | GTSAC | 4 cut(s) | 332, 383, 908, 1612 |
| TspRI | CASTG | 5 cut(s) | 394, 1194, 1213, 1402, 2095 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2206 |
| Vha464I | CTTAAG | 1 cut(s) | 2311 |
| VpaK11BI | GGWCC | 1 cut(s) | 2069 |
| XapI | RAATTY | 2 cut(s) | 258, 1369 |
| XbaI | TCTAGA | 2 cut(s) | 1919, 1969 |
| XceI | RCATGY | 4 cut(s) | 308, 1104, 1571, 2015 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1483 |
| XspI | CTAG | 5 cut(s) | 587, 1596, 1806, 1920, 1970 |
| ZrmI | AGTACT | 1 cut(s) | 2205 |
| Zsp2I | ATGCAT | 1 cut(s) | 1846 |