Rorug04G0382200
MYB Family

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001342
Physical Location & Seq
Forward (+)
55298382 .. 55301743
3362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0382200.1

Sequence Viewer

Length: 2508 bp
ATGTTTACCATATTCTTGTTCATTTACCATCTAATAGCCTTCGTTTCAGCACACAGATCAGATTATGTGCTAGCAGATGACATGGTAATCGACTGTGGCCCGTTGTCAACATCCAAAGTTGGGTTTCTAGAGCCGGTGTCTCCACTATCCACCATTGATGCTGAGAGTAAGATTGGAGCTTCTAGTCGTATACCTGGACCTATTCTCTTTCAAACGAACTACACTTACACCTGTATCGTCCCTCCAGGTCCCAAAATCATTCAATTCCAGTTCTATCCAACCTCACTGGAAAGCATAAACAAATCCGAAGCATTATTTACCATCAGAGCTGGAAAGTACACTTTGTTGACGACTTCAGCATCCTCCTACTCTATAGGTTCTCAAGGTCAAATCCAGCATGCCATCAGAGAATTCTGCATCAACGTAGATCATGGAAGACTACACGTGACATTCACGCCATCATCAACTCCTGGTGCCTATGCATTTGTAAACAAGATCAAAGTTGTTTCGGTGCCGACAAGTCTTTATGTGAGAGGAAATGATGAAGTTCCCCTTCAAATTCGTCTCATCGGACATAATCCTAAAGACCATCAAGTTTACATCCTCAACAACTCAATGGCTCTTGAGACCATGTACCGAGTCAACGTAGGCGGGCCTTTCATCTCTCCTGATCTAGATGGTTCTGAGATGCTGCGCACCTGGTCCACAGACGAAACATATCTGAATGCTATTGAGGACGATACACACATTCTTCAATCAAACATAGGAATTAAGTACAGCTCAGAGGTCCCAGCATACACTGCACCAGTAAAAGTATACACCACAACCAGGGCTTTATATGTTGATGGTAATACTAGCTGGTCATTCCCTCTTGATTCTGGATTCTATTACCTCATCAGATTTCATTTCTGCGAGATCAGTAAGAAGATTAAGCTAGGCGAAAGAGTTTTTAAAGTCTACATCAACTATCAAACAGCTGAGAACCATGCAGATGTAATCCAATGGAGCAATGGAGCTGGTCTTCCAGTACGTCGAGATTATGTCGTTGATTATGTTTCCGGGCATAGCAATAGCACGCGGAATCTGGTGGTTGCAATAGAAAACAACAACTCAGAACTTGATGATCATCAGGGAATCTTAAATGGCTTGGAAATCTTCAAAATATCAGACACTAACAACAATCTTGCTGGGGCGCATCCATTTGGTTTTGAAGTTGATCAGTACCAAAACATTCCAACATTTACTGCTGCACGTATCTTTCGCCGAATAGGTATTACATTCATGGCTATTCTGTTTGGTGTCCTTGTACTAACAGCGGTATTCCATTCCATAAAATTACCGATAGGACAGCGATGGGGTAAACAAGGCTTTCTCCCCTGGCATTGTTCTTCAGACCAATATTATTGTCGAAACTTCTCACTTGCTGAGATGAAGTCTGCAACAAACAACTTCTGTCAAGGTTTTCTGATTGGCAGTGGTGGATTTGGGAAGGTCTACAAGGGTTATATAGGAGGTGCTGGCTACACTGCAACTACTATTGCTATAAAGCGTGCAAATCCCACTTCAAAGCAAGGCTTACATGAATTCCAAACAGAAATCACCATGCTCTCCAAGCTACGACACCACCACTTGGTTTCTTTGATTGGGTACTGCAAAGAGGACAAGGAAATGATACTTGTGTACGACTATATGGCGCAAGGTACACTCCGTGATCATCTTTATGGTAAGTACCAGAAATCCCCACTTCCTTGGAAGCAGAGGATCAAGATATGTATAGGAGCAGCCCGAGGCCTGCACTATCTCCACACAGGGGCAAATGAAAAAATCATTCACCGGGATGTGAAGTCTAGTAACATACTGTTGGACAAAAATTTGGCGGCCAAAGTTTCAGATTTTGGATTGTCAAAAGTTGGCCCCGACCAGAATATGATTAGTGCCACTGCCCAATCATCAAATGGTGAGACTCCTCATGTTAGCACTGAAGTAAAGGGTAGTTTTGGATACCTAGACCCGGAATATTATCGAAGACAGAAACTGACCGAGAAATCAGACGTTTATTCATTTGGGGTAGTGTTGTTTGAAGTTGTGTGTGCTAGGCCAGCTGTGATAAGCGTTGTAGAAAATGGAGAGCCAGAACAAGTAAACTTAAGTGAATGGGCACTACAACATTGTAATCCTGGTCAGGAGGGGAAAGCAATTGATCACATCCTAGACCCGTCTCTATTGGGAAAGATCAATTCCGAGTCTCTGAAGACATTCACAGACATAGCAAGGCAATGTTTGACAGATAGGGGAAGTGAGCGGCCGTCGATGGGGGATGTGTTGTGGAAGTTGGAGGTGGCATTGCAGCAGCAAGAAAGAGCTGATCAAGTAGAAAACAATCGAATCGGCCCTAGTTTTCCTACAGAGATCGATGGTCATAAACAACAGGTCATTATTCAAGTTGGCATTTCAGATCCAACCCCAGGGCTCGAGTTTTCTGAGATGATGCTACCCACTGGACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

835

Amino Acids

93.16

Weight (kDa)

6.62

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 74 - 388 1.8e-17 Malectin-like domain
Malectin PF11721 232 - 353 1.8e-06 Malectin domain
Pkinase PF00069 489 - 775 1.6e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 490 - 773 9e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 695
AccB1I GGYRCC 2 cut(s) 473, 511
AccB7I CCANNNNNTGG 1 cut(s) 1630
AccBSI CCGCTC 1 cut(s) 2302
AccI GTMKAC 4 cut(s) 190, 816, 957, 1494
AccII CGCG 1 cut(s) 1078
AciI CCGC 5 cut(s) 651, 1078, 1316, 1877, 2302
AclWI GGATC 2 cut(s) 1769, 2450
AcoI YGGCCR 2 cut(s) 1878, 2303
AcsI RAATTY 4 cut(s) 410, 558, 1583, 1870
AcuI CTGAAG 4 cut(s) 339, 1374, 2001, 2270
AcvI CACGTG 1 cut(s) 445
AdeI CACNNNGTG 1 cut(s) 1709
AfiI CCNNNNNNNGG 7 cut(s) 120, 828, 1630, 1810, 2011, 2312, 2465
AflII CTTAAG 1 cut(s) 2146
AflIII ACRYGT 1 cut(s) 442
AgsI TTSAA 9 cut(s) 212, 263, 557, 755, 1159, 1211, 1566, 2081, 2441
AjnI CCWGG 8 cut(s) 193, 244, 469, 698, 827, 1376, 2176, 2464
Alw26I GTCTC 6 cut(s) 144, 569, 620, 1955, 2223, 2250
AlwI GGATC 2 cut(s) 1769, 2450
AlwNI CAGNNNCTG 1 cut(s) 2035
Ama87I CYCGRG 2 cut(s) 1785, 2471
AoxI GGCC 8 cut(s) 97, 653, 1789, 1878, 1912, 2096, 2303, 2389
ApeKI GCWGC 5 cut(s) 691, 1247, 1781, 2347, 2350
ApoI RAATTY 4 cut(s) 410, 558, 1583, 1870
Asp700I GAANNNNTTC 1 cut(s) 2255
AspLEI GCGC 3 cut(s) 696, 1195, 1696
AspS9I GGNCC 8 cut(s) 98, 197, 248, 653, 702, 787, 1913, 2390
AsuC2I CCSGG 3 cut(s) 1060, 1835, 2012
AsuHPI GGTGA 3 cut(s) 1591, 1823, 1970
AsuNHI GCTAGC 1 cut(s) 70
AvaI CYCGRG 2 cut(s) 1785, 2471
AvaII GGWCC 4 cut(s) 197, 248, 702, 787
BaeGI GKGCMC 1 cut(s) 2161
BaeI ACNNNNGTAYC 4 cut(s) 217, 250, 1664, 1697
BanI GGYRCC 2 cut(s) 473, 511
BanII GRGCYC 1 cut(s) 2472
BbrPI CACGTG 1 cut(s) 445
BbsI GAAGAC 4 cut(s) 442, 1013, 2032, 2258
BbvI GCAGC 5 cut(s) 678, 1234, 1793, 2359, 2362
BceAI ACGGC 1 cut(s) 2290
BciT130I CCWGG 8 cut(s) 195, 246, 471, 700, 829, 1378, 2178, 2466
BciVI GTATCC 1 cut(s) 1994
BclI TGATCA 5 cut(s) 1123, 1216, 1711, 2200, 2365
BcnI CCSGG 3 cut(s) 1060, 1835, 2012
BcoDI GTCTC 6 cut(s) 144, 569, 620, 1955, 2223, 2250
BfmI CTRYAG 2 cut(s) 372, 2403
BfrI CTTAAG 1 cut(s) 2146
BfuI GTATCC 1 cut(s) 1994
BisI GCNGC 7 cut(s) 692, 1248, 1782, 1878, 2303, 2348, 2351
BlsI GCNGC 7 cut(s) 693, 1249, 1783, 1879, 2304, 2349, 2352
Bme18I GGWCC 4 cut(s) 197, 248, 702, 787
BmeT110I CYCGRG 2 cut(s) 1785, 2471
BmgT120I GGNCC 8 cut(s) 98, 197, 248, 653, 702, 787, 1913, 2390
BmiI GGNNCC 5 cut(s) 250, 475, 513, 789, 1915
BmsI GCATC 6 cut(s) 148, 368, 426, 678, 1204, 2478
BmtI GCTAGC 1 cut(s) 74
BpiI GAAGAC 4 cut(s) 442, 1013, 2032, 2258
BpmI CTGGAG 1 cut(s) 228
BpuEI CTTGAG 2 cut(s) 366, 644
BpuMI CCSGG 3 cut(s) 1060, 1835, 2012
Bsa29I ATCGAT 1 cut(s) 2412
BsaAI YACGTR 2 cut(s) 445, 1253
BsaBI GATNNNNATC 1 cut(s) 1125
BsaI GGTCTC 1 cut(s) 620
BsaJI CCNNGG 6 cut(s) 828, 1376, 1748, 1786, 2464, 2465
Bsc4I CCNNNNNNNGG 7 cut(s) 120, 828, 1630, 1810, 2011, 2312, 2465
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 5 cut(s) 268, 291, 806, 1025, 2503
Bse3DI GCAATG 3 cut(s) 1015, 2282, 2342
Bse8I GATNNNNATC 1 cut(s) 1125
BseBI CCWGG 8 cut(s) 195, 246, 471, 700, 829, 1378, 2178, 2466
BseCI ATCGAT 1 cut(s) 2412
BseDI CCNNGG 6 cut(s) 828, 1376, 1748, 1786, 2464, 2465
BseGI GGATG 7 cut(s) 110, 359, 600, 1195, 1843, 2205, 2323
BseJI GATNNNNATC 1 cut(s) 1125
BseLI CCNNNNNNNGG 7 cut(s) 120, 828, 1630, 1810, 2011, 2312, 2465
BseMI GCAATG 3 cut(s) 1015, 2282, 2342
BseMII CTCAG 7 cut(s) 153, 675, 795, 969, 1125, 1416, 2472
BseNI ACTGG 5 cut(s) 268, 291, 806, 1025, 2503
BseRI GAGGAG 1 cut(s) 1956
BseSI GKGCMC 1 cut(s) 2161
BseX3I CGGCCG 1 cut(s) 2303
BseXI GCAGC 5 cut(s) 678, 1234, 1793, 2359, 2362
BseYI CCCAGC 2 cut(s) 790, 1187
BsgI GTGCAG 3 cut(s) 786, 1233, 1778
Bsh1236I CGCG 1 cut(s) 1078
Bsh1285I CGRYCG 1 cut(s) 2306
BshFI GGCC 8 cut(s) 99, 655, 1791, 1880, 1914, 2098, 2305, 2391
BshNI GGYRCC 2 cut(s) 473, 511
BshVI ATCGAT 1 cut(s) 2412
BsiEI CGRYCG 1 cut(s) 2306
BsiHKCI CYCGRG 2 cut(s) 1785, 2471
BsiSI CCGG 4 cut(s) 134, 1059, 1834, 2012
BslFI GGGAC 3 cut(s) 224, 234, 773
BslI CCNNNNNNNGG 7 cut(s) 120, 828, 1630, 1810, 2011, 2312, 2465
BsmAI GTCTC 6 cut(s) 144, 569, 620, 1955, 2223, 2250
BsmBI CGTCTC 2 cut(s) 569, 2223
BsmFI GGGAC 3 cut(s) 224, 234, 773
BsmI GAATGC 1 cut(s) 730
BsnI GGCC 8 cut(s) 99, 655, 1791, 1880, 1914, 2098, 2305, 2391
Bso31I GGTCTC 1 cut(s) 620
BsoBI CYCGRG 2 cut(s) 1785, 2471
Bsp1286I GDGCHC 2 cut(s) 2161, 2472
BspACI CCGC 5 cut(s) 651, 1078, 1316, 1877, 2302
BspANI GGCC 8 cut(s) 99, 655, 1791, 1880, 1914, 2098, 2305, 2391
BspCNI CTCAG 7 cut(s) 154, 676, 794, 970, 1124, 1417, 2473
BspDI ATCGAT 1 cut(s) 2412
BspFNI CGCG 1 cut(s) 1078
BspLI GGNNCC 5 cut(s) 250, 475, 513, 789, 1915
BspOI GCTAGC 1 cut(s) 74
BspPI GGATC 2 cut(s) 1769, 2450
BspT107I GGYRCC 2 cut(s) 473, 511
BspTI CTTAAG 1 cut(s) 2146
BspTNI GGTCTC 1 cut(s) 620
BsrBI CCGCTC 1 cut(s) 2302
BsrDI GCAATG 3 cut(s) 1015, 2282, 2342
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 5 cut(s) 268, 291, 806, 1025, 2503
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 6 cut(s) 828, 1376, 1748, 1786, 2464, 2465
BssNAI GTATAC 2 cut(s) 191, 817
BssT1I CCWWGG 1 cut(s) 1748
Bst1107I GTATAC 2 cut(s) 191, 817
Bst2UI CCWGG 8 cut(s) 195, 246, 471, 700, 829, 1378, 2178, 2466
Bst4CI ACNGT 2 cut(s) 95, 1860
BstAFI CTTAAG 1 cut(s) 2146
BstAPI GCANNNNNTGC 1 cut(s) 800
BstBAI YACGTR 2 cut(s) 445, 1253
BstC8I GCNNGC 8 cut(s) 72, 399, 653, 1076, 1519, 1551, 1793, 2100
BstDEI CTNAG 7 cut(s) 162, 684, 781, 978, 1111, 1425, 2481
BstF5I GGATG 7 cut(s) 110, 359, 600, 1195, 1843, 2205, 2323
BstFNI CGCG 1 cut(s) 1078
BstHHI GCGC 3 cut(s) 696, 1195, 1696
BstMAI GTCTC 6 cut(s) 144, 569, 620, 1955, 2223, 2250
BstMCI CGRYCG 1 cut(s) 2306
BstMWI GCNNNNNNNGC 3 cut(s) 800, 1612, 2099
BstNI CCWGG 8 cut(s) 195, 246, 471, 700, 829, 1378, 2178, 2466
BstNSI RCATGY 1 cut(s) 401
BstSFI CTRYAG 2 cut(s) 372, 2403
BstSLI GKGCMC 1 cut(s) 2161
BstUI CGCG 1 cut(s) 1078
BstV1I GCAGC 5 cut(s) 678, 1234, 1793, 2359, 2362
BstV2I GAAGAC 4 cut(s) 442, 1013, 2032, 2258
BstX2I RGATCY 1 cut(s) 2455
BstXI CCANNNNNNTGG 1 cut(s) 1749
BstYI RGATCY 1 cut(s) 2455
BstZ17I GTATAC 2 cut(s) 191, 817
BstZI CGGCCG 1 cut(s) 2303
Bsu15I ATCGAT 1 cut(s) 2412
BsuI GTATCC 1 cut(s) 1994
BsuRI GGCC 8 cut(s) 99, 655, 1791, 1880, 1914, 2098, 2305, 2391
BsuTUI ATCGAT 1 cut(s) 2412
BtgZI GCGATG 1 cut(s) 1366
BtsCI GGATG 7 cut(s) 110, 359, 600, 1195, 1843, 2205, 2323
BtsI GCAGTG 4 cut(s) 798, 1480, 1524, 1938
BtsIMutI CAGTG 7 cut(s) 284, 798, 1480, 1524, 1938, 1977, 2496
Cac8I GCNNGC 8 cut(s) 72, 399, 653, 1076, 1519, 1551, 1793, 2100
CaiI CAGNNNCTG 1 cut(s) 2035
CfoI GCGC 3 cut(s) 696, 1195, 1696
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 8 cut(s) 98, 197, 248, 653, 702, 787, 1913, 2390
ClaI ATCGAT 1 cut(s) 2412
CsiI ACCWGGT 1 cut(s) 698
CviAII CATG 9 cut(s) 82, 398, 431, 631, 986, 1282, 1580, 1603, 1970
DdeI CTNAG 7 cut(s) 162, 684, 781, 978, 1111, 1425, 2481
DraI TTTAAA 1 cut(s) 952
DraIII CACNNNGTG 1 cut(s) 1709
EaeI YGGCCR 2 cut(s) 1878, 2303
EagI CGGCCG 1 cut(s) 2303
EclXI CGGCCG 1 cut(s) 2303
Eco130I CCWWGG 1 cut(s) 1748
Eco147I AGGCCT 1 cut(s) 1791
Eco24I GRGCYC 1 cut(s) 2472
Eco31I GGTCTC 1 cut(s) 620
Eco47I GGWCC 4 cut(s) 197, 248, 702, 787
Eco52I CGGCCG 1 cut(s) 2303
Eco57I CTGAAG 4 cut(s) 339, 1374, 2001, 2270
Eco72I CACGTG 1 cut(s) 445
Eco88I CYCGRG 2 cut(s) 1785, 2471
EcoO109I RGGNCCY 2 cut(s) 248, 787
EcoRI GAATTC 2 cut(s) 410, 1583
EcoRII CCWGG 8 cut(s) 193, 244, 469, 698, 827, 1376, 2176, 2464
EcoT14I CCWWGG 1 cut(s) 1748
EcoT22I ATGCAT 1 cut(s) 484
EcoT38I GRGCYC 1 cut(s) 2472
ErhI CCWWGG 1 cut(s) 1748
Esp3I CGTCTC 2 cut(s) 569, 2223
FaeI CATG 9 cut(s) 85, 401, 434, 634, 989, 1285, 1583, 1606, 1973
FalI AAGNNNNNCTT 4 cut(s) 537, 569, 1559, 1591
FaqI GGGAC 3 cut(s) 224, 234, 773
FatI CATG 9 cut(s) 81, 397, 430, 630, 985, 1281, 1579, 1602, 1969
FauI CCCGC 1 cut(s) 644
FbaI TGATCA 5 cut(s) 1123, 1216, 1711, 2200, 2365
FblI GTMKAC 4 cut(s) 190, 816, 957, 1494
Fnu4HI GCNGC 7 cut(s) 692, 1248, 1782, 1878, 2303, 2348, 2351
FokI GGATG 7 cut(s) 97, 346, 587, 1182, 1850, 2192, 2330
FriOI GRGCYC 1 cut(s) 2472
Fsp4HI GCNGC 7 cut(s) 692, 1248, 1782, 1878, 2303, 2348, 2351
FspI TGCGCA 1 cut(s) 695
GlaI GCGC 3 cut(s) 695, 1194, 1695
GluI GCNGC 7 cut(s) 692, 1248, 1782, 1878, 2303, 2348, 2351
GsaI CCCAGC 2 cut(s) 794, 1191
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 8 cut(s) 99, 655, 1791, 1880, 1914, 2098, 2305, 2391
HapII CCGG 4 cut(s) 134, 1059, 1834, 2012
HhaI GCGC 3 cut(s) 696, 1195, 1696
Hin1II CATG 9 cut(s) 85, 401, 434, 634, 989, 1285, 1583, 1606, 1973
Hin6I GCGC 3 cut(s) 694, 1193, 1694
HinP1I GCGC 3 cut(s) 694, 1193, 1694
HincII GTYRAC 3 cut(s) 108, 348, 643
HindII GTYRAC 3 cut(s) 108, 348, 643
HinfI GANTC 8 cut(s) 639, 875, 882, 1081, 1134, 1963, 2243, 2385
HpaII CCGG 4 cut(s) 134, 1059, 1834, 2012
HphI GGTGA 3 cut(s) 1591, 1823, 1970
Hpy188III TCNNGA 9 cut(s) 128, 623, 668, 674, 872, 879, 1034, 1765, 2183
Hpy99I CGWCG 2 cut(s) 1035, 2311
HpyAV CCTTC 3 cut(s) 49, 563, 1483
HpyCH4III ACNGT 2 cut(s) 95, 1860
HpyCH4IV ACGT 7 cut(s) 423, 444, 645, 1030, 1252, 2052, 2503
HpyF10VI GCNNNNNNNGC 3 cut(s) 800, 1612, 2099
HpyF3I CTNAG 7 cut(s) 162, 684, 781, 978, 1111, 1425, 2481
HpySE526I ACGT 7 cut(s) 423, 444, 645, 1030, 1252, 2052, 2503
Hsp92II CATG 9 cut(s) 85, 401, 434, 634, 989, 1285, 1583, 1606, 1973
HspAI GCGC 3 cut(s) 694, 1193, 1694
Ksp22I TGATCA 5 cut(s) 1123, 1216, 1711, 2200, 2365
LmnI GCTCC 4 cut(s) 176, 1005, 1013, 1778
Lsp1109I GCAGC 5 cut(s) 678, 1234, 1793, 2359, 2362
LweI GCATC 6 cut(s) 148, 368, 426, 678, 1204, 2478
MabI ACCWGGT 1 cut(s) 698
MaeII ACGT 7 cut(s) 423, 444, 645, 1030, 1252, 2052, 2503
MaeIII GTNAC 2 cut(s) 445, 1850
MbiI CCGCTC 1 cut(s) 2302
MboII GAAGA 8 cut(s) 447, 743, 937, 1013, 1147, 1380, 2037, 2263
MfeI CAATTG 1 cut(s) 2196
MflI RGATCY 1 cut(s) 2455
MhlI GDGCHC 2 cut(s) 2161, 2472
MluCI AATT 9 cut(s) 263, 410, 558, 768, 1334, 1583, 1870, 2196, 2236
MlyI GAGTC 3 cut(s) 648, 1957, 2252
MmeI TCCRAC 5 cut(s) 302, 1259, 1842, 2313, 2483
Mph1103I ATGCAT 1 cut(s) 484
MroXI GAANNNNTTC 1 cut(s) 2255
MseI TTAA 5 cut(s) 771, 930, 951, 1139, 2147
MslI CAYNNNNRTG 3 cut(s) 990, 1719, 1836
MspA1I CMGCKG 3 cut(s) 977, 1316, 2102
MspCI CTTAAG 1 cut(s) 2146
MspI CCGG 4 cut(s) 134, 1059, 1834, 2012
MunI CAATTG 1 cut(s) 2196
Mva1269I GAATGC 1 cut(s) 730
MvaI CCWGG 8 cut(s) 195, 246, 471, 700, 829, 1378, 2178, 2466
MvnI CGCG 1 cut(s) 1078
MwoI GCNNNNNNNGC 3 cut(s) 800, 1612, 2099
NciI CCSGG 3 cut(s) 1060, 1835, 2012
NheI GCTAGC 1 cut(s) 70
NlaIII CATG 9 cut(s) 85, 401, 434, 634, 989, 1285, 1583, 1606, 1973
NlaIV GGNNCC 5 cut(s) 250, 475, 513, 789, 1915
NmuCI GTSAC 1 cut(s) 445
NsbI TGCGCA 1 cut(s) 695
NsiI ATGCAT 1 cut(s) 484
NspI RCATGY 1 cut(s) 401
PaeI GCATGC 1 cut(s) 401
PaeR7I CTCGAG 1 cut(s) 2471
PasI CCCWGGG 1 cut(s) 2465
PceI AGGCCT 1 cut(s) 1791
PctI GAATGC 1 cut(s) 730
PdmI GAANNNNTTC 1 cut(s) 2255
PfeI GAWTC 5 cut(s) 875, 882, 1081, 1134, 2385
PflMI CCANNNNNTGG 1 cut(s) 1630
PkrI GCNGC 7 cut(s) 693, 1249, 1783, 1879, 2304, 2349, 2352
PleI GAGTC 3 cut(s) 647, 1957, 2251
PmaCI CACGTG 1 cut(s) 445
PmlI CACGTG 1 cut(s) 445
PpsI GAGTC 3 cut(s) 647, 1957, 2251
Ppu21I YACGTR 2 cut(s) 445, 1253
PpuMI RGGWCCY 2 cut(s) 248, 787
Psp5II RGGWCCY 2 cut(s) 248, 787
Psp6I CCWGG 8 cut(s) 193, 244, 469, 698, 827, 1376, 2176, 2464
PspCI CACGTG 1 cut(s) 445
PspFI CCCAGC 2 cut(s) 790, 1187
PspGI CCWGG 8 cut(s) 193, 244, 469, 698, 827, 1376, 2176, 2464
PspN4I GGNNCC 5 cut(s) 250, 475, 513, 789, 1915
PspPI GGNCC 8 cut(s) 98, 197, 248, 653, 702, 787, 1913, 2390
PspPPI RGGWCCY 2 cut(s) 248, 787
PspXI VCTCGAGB 1 cut(s) 2471
PsrI GAACNNNNNNTAC 2 cut(s) 209, 241
PstNI CAGNNNCTG 1 cut(s) 2035
PsuI RGATCY 1 cut(s) 2455
PvuII CAGCTG 2 cut(s) 977, 2102
RseI CAYNNNNRTG 3 cut(s) 990, 1719, 1836
SaqAI TTAA 5 cut(s) 771, 930, 951, 1139, 2147
SatI GCNGC 7 cut(s) 692, 1248, 1782, 1878, 2303, 2348, 2351
Sau96I GGNCC 8 cut(s) 98, 197, 248, 653, 702, 787, 1913, 2390
SchI GAGTC 3 cut(s) 648, 1957, 2252
SduI GDGCHC 2 cut(s) 2161, 2472
SexAI ACCWGGT 1 cut(s) 698
SfaNI GCATC 6 cut(s) 148, 368, 426, 678, 1204, 2478
SfcI CTRYAG 2 cut(s) 372, 2403
Sfr274I CTCGAG 1 cut(s) 2471
SinI GGWCC 4 cut(s) 197, 248, 702, 787
SlaI CTCGAG 1 cut(s) 2471
SmiMI CAYNNNNRTG 3 cut(s) 990, 1719, 1836
SmlI CTYRAG 4 cut(s) 381, 623, 2146, 2471
SmoI CTYRAG 4 cut(s) 381, 623, 2146, 2471
SphI GCATGC 1 cut(s) 401
Sse9I AATT 9 cut(s) 263, 410, 558, 768, 1334, 1583, 1870, 2196, 2236
SseBI AGGCCT 1 cut(s) 1791
SsiI CCGC 5 cut(s) 651, 1078, 1316, 1877, 2302
SspI AATATT 2 cut(s) 1400, 2018
StuI AGGCCT 1 cut(s) 1791
StyI CCWWGG 1 cut(s) 1748
TaaI ACNGT 2 cut(s) 95, 1860
TaiI ACGT 7 cut(s) 426, 447, 648, 1033, 1255, 2055, 2506
TaqI TCGA 8 cut(s) 90, 1033, 1408, 2023, 2309, 2383, 2412, 2472
TaqII GACCGA 1 cut(s) 2054
TasI AATT 9 cut(s) 263, 410, 558, 768, 1334, 1583, 1870, 2196, 2236
TatI WGTACW 3 cut(s) 336, 774, 1306
TauI GCSGC 2 cut(s) 1880, 2305
TfiI GAWTC 5 cut(s) 875, 882, 1081, 1134, 2385
Tru1I TTAA 5 cut(s) 771, 930, 951, 1139, 2147
Tru9I TTAA 5 cut(s) 771, 930, 951, 1139, 2147
TscAI CASTG 7 cut(s) 291, 805, 1480, 1531, 1945, 1984, 2503
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 5 cut(s) 691, 1247, 1781, 2347, 2350
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 9 cut(s) 10, 558, 649, 893, 1270, 1445, 1596, 1833, 2049
TspGWI ACGGA 1 cut(s) 1697
TspRI CASTG 7 cut(s) 291, 805, 1480, 1531, 1945, 1984, 2503
Van91I CCANNNNNTGG 1 cut(s) 1630
Vha464I CTTAAG 1 cut(s) 2146
VpaK11BI GGWCC 4 cut(s) 197, 248, 702, 787
XapI RAATTY 4 cut(s) 410, 558, 1583, 1870
XbaI TCTAGA 2 cut(s) 127, 673
XceI RCATGY 1 cut(s) 401
XcmI CCANNNNNNNNNTGG 2 cut(s) 1007, 1952
XhoI CTCGAG 1 cut(s) 2471
XmiI GTMKAC 4 cut(s) 190, 816, 957, 1494
XmnI GAANNNNTTC 1 cut(s) 2255
Zsp2I ATGCAT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.